Literature DB >> 31640341

Super-Resolution Reconstruction for Two- and Three-Dimensional LA-ICP-MS Bioimaging.

Mika T Westerhausen1, David P Bishop1, Annette Dowd2, Jonathan Wanagat3, Nerida Cole4, Philip A Doble1.   

Abstract

The resolution of laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS) elemental bioimaging is usually constrained by the diameter of the laser spot size and is often not adequate to explore in situ subcellular distributions of elements and proteins in biological tissue sections. Super-resolution reconstruction is a method typically used for many imaging modalities and combines multiple lower resolution images to create a higher resolution image. Here, we present a super-resolution reconstruction method for LA-ICP-MS imaging by ablating consecutive layers of a biological specimen with offset orthogonal scans, resulting in a 10× improvement in resolution for quantitative measurement of dystrophin in murine muscle fibers. Layer-by-layer image reconstruction was also extended to the third dimension without the requirement of image registration across multiple thin section specimens. Quantitative super-resolution reconstruction, combined with Gaussian filtering and application of the Richardson-Lucy total variation algorithm, provided superior image clarity and fidelity in two- and three-dimensions.

Entities:  

Year:  2019        PMID: 31640341      PMCID: PMC7232986          DOI: 10.1021/acs.analchem.9b02380

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  23 in total

1.  Robust super-resolution volume reconstruction from slice acquisitions: application to fetal brain MRI.

Authors:  Ali Gholipour; Judy A Estroff; Simon K Warfield
Journal:  IEEE Trans Med Imaging       Date:  2010-06-07       Impact factor: 10.048

2.  MMP-11 as a biomarker for metastatic breast cancer by immunohistochemical-assisted imaging mass spectrometry.

Authors:  Raquel González de Vega; David Clases; María Luisa Fernández-Sánchez; Noemí Eiró; Luis O González; Francisco J Vizoso; Philip A Doble; Alfredo Sanz-Medel
Journal:  Anal Bioanal Chem       Date:  2018-09-15       Impact factor: 4.142

Review 3.  Dystroglycan: from biosynthesis to pathogenesis of human disease.

Authors:  Rita Barresi; Kevin P Campbell
Journal:  J Cell Sci       Date:  2006-01-15       Impact factor: 5.285

4.  A simple metal staining procedure for identification and visualization of single cells by LA-ICP-MS.

Authors:  A J Herrmann; S Techritz; N Jakubowski; A Haase; A Luch; U Panne; L Mueller
Journal:  Analyst       Date:  2017-04-11       Impact factor: 4.616

Review 5.  DeconvolutionLab2: An open-source software for deconvolution microscopy.

Authors:  Daniel Sage; Lauréne Donati; Ferréol Soulez; Denis Fortun; Guillaume Schmit; Arne Seitz; Romain Guiet; Cédric Vonesch; Michael Unser
Journal:  Methods       Date:  2017-01-03       Impact factor: 3.608

6.  Quantitative imaging of gold and silver nanoparticles in single eukaryotic cells by laser ablation ICP-MS.

Authors:  Daniela Drescher; Charlotte Giesen; Heike Traub; Ulrich Panne; Janina Kneipp; Norbert Jakubowski
Journal:  Anal Chem       Date:  2012-11-08       Impact factor: 6.986

7.  Trends in single-cell analysis by use of ICP-MS.

Authors:  Larissa Mueller; Heike Traub; Norbert Jakubowski; Daniela Drescher; Vladimir I Baranov; Janina Kneipp
Journal:  Anal Bioanal Chem       Date:  2014-10-01       Impact factor: 4.142

8.  Three-dimensional atlas of iron, copper, and zinc in the mouse cerebrum and brainstem.

Authors:  Dominic J Hare; Jason K Lee; Alison D Beavis; Amanda van Gramberg; Jessica George; Paul A Adlard; David I Finkelstein; Philip A Doble
Journal:  Anal Chem       Date:  2012-04-10       Impact factor: 6.986

9.  Membrane organization of the dystrophin-glycoprotein complex.

Authors:  J M Ervasti; K P Campbell
Journal:  Cell       Date:  1991-09-20       Impact factor: 41.582

Review 10.  Imaging metals in biology: balancing sensitivity, selectivity and spatial resolution.

Authors:  Dominic J Hare; Elizabeth J New; Martin D de Jonge; Gawain McColl
Journal:  Chem Soc Rev       Date:  2015-10-07       Impact factor: 54.564

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  3 in total

1.  Effective processing and evaluation of chemical imaging data with respect to morphological features of the zebrafish embryo.

Authors:  Katharina Halbach; Timothy Holbrook; Thorsten Reemtsma; Stephan Wagner
Journal:  Anal Bioanal Chem       Date:  2021-02-01       Impact factor: 4.142

2.  Assessing the reproducibility of labelled antibody binding in quantitative multiplexed immuno-mass spectrometry imaging.

Authors:  Jonathan Wanagat; David P Bishop; Monique G Mello; Mika T Westerhausen; Prashina Singh; Philip A Doble
Journal:  Anal Bioanal Chem       Date:  2021-07-25       Impact factor: 4.478

3.  Quantitative immuno-mass spectrometry imaging of skeletal muscle dystrophin.

Authors:  David P Bishop; Mika T Westerhausen; Florian Barthelemy; Thomas Lockwood; Nerida Cole; Elizabeth M Gibbs; Rachelle H Crosbie; Stanley F Nelson; M Carrie Miceli; Philip A Doble; Jonathan Wanagat
Journal:  Sci Rep       Date:  2021-01-13       Impact factor: 4.379

  3 in total

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