| Literature DB >> 31638929 |
Li-Feng Zhang1,2, Li-Jie Zhu3, Wei Zhang1, Wei Yuan5, Ning-Hong Song6, Li Zuo7, Yuan-Yuan Mi8, Zeng-Jun Wang1, Wei Zhang1.
Abstract
BACKGROUND: Several studies have focused on the relationship between MMP-8 variants and cancer risk, but they have been unsuccessful in drawing reliable conclusions.Entities:
Keywords: Analysis; Cancer; MMP-8; Variant
Mesh:
Substances:
Year: 2019 PMID: 31638929 PMCID: PMC6805444 DOI: 10.1186/s12881-019-0890-z
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Basic information of included studies for MMP-8 C-799 T, Lys460Thr, and Lys87Glu variants and overall cancer risk
| Author | Year | Origin | Cancer Type | Race | Source | Case | Control | Case | Control |
| Method | Age range | NOS | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C-799 T(rs11225395) | TT | TC | CC | TT | TC | CC | Case | Control | ||||||||||
| Tsai | 2018 | Taiwan | Bladder cancer | Asian | PB | 375 | 375 | 37 | 152 | 186 | 38 | 140 | 197 | 0.082 | PCR-RFLP | mean 61.4 | mean 62.9 | 7 |
| Hsiao | 2018 | Taiwan | Breast cancer | Asian | PB | 1232 | 1232 | 118 | 466 | 648 | 131 | 468 | 633 | 0.002 | PCR | NA | NA | 7 |
| Pei | 2017 | Taiwan | Leukemia | Asian | PB | 266 | 266 | 29 | 98 | 139 | 32 | 105 | 129 | 0.145 | PCR-RFLP | mean 7.0 | mean 8.3 | 7 |
| Shen | 2017 | Taiwan | Lung cancer | Asian | PB | 358 | 716 | 40 | 130 | 188 | 92 | 273 | 351 | 0.001 | PCR-RFLP | mean 64.0 | mean 64.8 | 7 |
| Hung | 2017 | Taiwan | Oral cancer | Asian | PB | 788 | 956 | 90 | 284 | 414 | 126 | 364 | 466 | < 0.001 | PCR | mean 55.8 | mean 56.6 | 7 |
| Arechavaleta | 2014 | Mexico | Ovary cancer | Latin | HB | 51 | 37 | 12 | 24 | 15 | 5 | 26 | 6 | 0.013 | PCR-RFLP | 49 (25–82) | 39 (13–77) | 7 |
| Wieczorek | 2013 | Poland | Bladder cancer | Caucasian | HB | 241 | 199 | 44 | 125 | 72 | 38 | 101 | 60 | 0.697 | RT PCR | 66.3 ± 10.6 | 66.1 ± 10.4 | 8 |
| Srivastava | 2013 | India | Bladder cancer | Asian | HB | 200 | 200 | 11 | 90 | 99 | 24 | 84 | 92 | 0.478 | PCR-based | 58.5 ± 12.4 | 56.8 ± 10.8 | 8 |
| Kim | 2011 | Korea | Gastric cancer | Asian | HB | 148 | 315 | 14 | 67 | 67 | 38 | 127 | 150 | 0.172 | GoldenGate | mean 57.8 | mean 55.2 | 7 |
| Debniak | 2011 | Poland | MM | Caucasian | PB | 296 | 290 | 58 | 152 | 86 | 43 | 134 | 113 | 0.750 | TaqMan | mean 56.0 | mean 55.0 | 8 |
| Qiu | 2008 | China Mainland | HCa | Asian | HB | 417 | 480 | 81 | 196 | 140 | 80 | 216 | 184 | 0.223 | PCR-RFLP | NA | NA | 8 |
| Lys460Thr | CC | CA | AA | CC | CA | AA | ||||||||||||
| Tsai | 2018 | Taiwan | Bladder cancer | Asian | PB | 375 | 375 | 3 | 7 | 365 | 4 | 9 | 362 | < 0.001 | PCR-RFLP | mean 61.4 | mean 62.9 | 7 |
| Hsiao | 2018 | Taiwan | Breast cancer | Asian | PB | 1232 | 1232 | 7 | 26 | 1199 | 8 | 23 | 1201 | < 0.001 | PCR | NA | NA | 7 |
| Pei | 2017 | Taiwan | Leukemia | Asian | PB | 266 | 266 | 0 | 2 | 264 | 0 | 3 | 263 | 0.926 | PCR-RFLP | mean 7.0 | mean 8.3 | 7 |
| Shen | 2017 | Taiwan | Lung cancer | Asian | PB | 358 | 715 | 0 | 3 | 355 | 0 | 4 | 711 | 0.940 | PCR-RFLP | mean 64.0 | mean 64.8 | 7 |
| Hung | 2017 | Taiwan | Oral cancer | Asian | PB | 788 | 956 | 0 | 7 | 781 | 0 | 10 | 946 | 0.871 | PCR | mean 55.8 | mean 56.6 | 7 |
| Lys87Glu | AA | AG | GG | AA | AG | GG | ||||||||||||
| Nan | 2008 | USA | Skin Cancer | Caucasian | PB | 206 | 827 | 56 | 104 | 46 | 222 | 409 | 196 | 0.776 | TaqMan | mean 63.4 | mean 64.5 | 7 |
| Kader | 2006 | USA | Invasive BCa | Caucasian | HB | 236 | 546 | 61 | 106 | 69 | 115 | 278 | 153 | 0.587 | RT PCR | 65 (21–88) | 64 (24–89) | 7 |
| Kader | 2006 | USA | Superficial BCa | Caucasian | HB | 307 | 546 | 70 | 152 | 85 | 115 | 278 | 153 | 0.587 | RT PCR | 65 (21–88) | 64 (24–89) | 7 |
HB hospital-based, HCa Hepatocellular carcinoma, BCa bladder cancer, MM Malignant melanoma, PB population-based, RT real time, PCR-RFLP polymerase chain reaction and restrictive fragment length polymorphism, NA not available, HWE Hardy-Weinberg equilibrium of controls
Fig. 1Minor allele and major allele frequencies for MMP-8 C-799 T (a), Lys460Thr (b), and Lys87Glu (c) variants in controls stratified by ethnicity. Vertical line, allele frequency; Horizontal line, allele type
Stratified analyses of MMP-8 C-799 T, Lys460Thr, and Lys87Glu variants on overall cancer risk
| Variables |
| Case/ | OR(95% CI) | OR(95% CI) | OR(95% CI) | OR(95% CI) | OR(95% CI) |
|---|---|---|---|---|---|---|---|
| Control | M-allele vs. W-allele | MM vs. WW | MW vs. WW | MM + MW vs. WW | MM vs. MW + WW | ||
| C-799 T | |||||||
| Total | 11 | 4372/5066 | 0.98 (0.92–1.04) 0.068 0.429 | 0.94 (0.82–1.07) 0.097 0.362 | 1.00 (0.92–1.09) 0.193 0.992 | 0.98 (0.90–1.07) 0.086 0.666 | 0.94 (0.83–1.07) 0.249 0.348 |
| Ethnicity | |||||||
| Asian | 8 | 3784/4540 | 0.95 (0.89–1.01) 0.248 0.125 | 0.89 (0.77–1.02) 0.258 0.102 | 0.98 (0.89–1.08) 0.585 0.682 | 0.96 (0.88–1.04) 0.396 0.322 | 0.90 (0.78–1.03) 0.401 0.111 |
| Caucasian | 2 | 537/489 | 1.18 (0.99–1.41) 0.082 0.062 | 1.38 (0.95–1.96) 0.105 0.095 | 1.28 (0.97–1.69) 0.201 0.082 | 1.30 (1.00–1.70) 0.115 0.047 | 1.18 (0.85–1.62) 0.236 0.322 |
| Latin | 1 | 51/37 | 0.94 (0.52–1.71) - 0.835 | 0.96 (0.23–3.93) - 0.955 | 0.37 (0.12–1.11) - 0.075 | 0.46 (0.16–1.34) - 0.157 | 1.97 (0.63–6.18) - 0.245 |
| Cancer Type | |||||||
| BCa | 3 | 816/774 | 0.97 (0.83–1.12) 0.286 0.671 | 0.85 (0.61–1.17) 0.142 0.316 | 1.08 (0.87–1.33) 0.837 0.492 | 1.02 (0.84–1.25) 0.582 0.813 | 0.83 (0.61–1.12) 0.151 0.219 |
| Other cancers | 8 | 3556/4292 | 0.99 (0.89–1.11) 0.039 0.898 | 0.96 (0.83–1.11) 0.108 0.578 | 0.99 (0.89–1.09) 0.080 0.763 | 1.00 (0.86–1.16) 0.033 0.965 | 0.97 (0.84–1.11) 0.329 0.631 |
| Source of control | |||||||
| HB | 5 | 1057/1231 | 1.02 (0.90–1.15) 0.297 0.746 | 0.99 (0.76–1.28) 0.123 0.939 | 1.08 (0.90–1.30) 0.193 0.415 | 1.06 (0.89–1.26) 0.341 0.539 | 0.98 (0.77–1.23) 0.082 0.837 |
| PB | 6 | 3315/3835 | 0.98 (0.87–1.10) 0.039 0.705 | 0.92 (0.79–1.08) 0.127 0.310 | 0.98 (0.88–1.08) 0.146 0.662 | 0.99 (0.85–1.14) 0.049 0.844 | 0.93 (0.80–1.08) 0.528 0.328 |
| Lys460Thr | |||||||
| Total | 5 | 3019/3544 | 0.94 (0.67–1.32) 0.905 0.729 | 0.83 (0.36–1.93) 0.859 0.669 | 1.00 (0.66–1.50) 0.904 0.994 | 0.96 (0.67–1.40) 0.886 0.848 | 0.83 (0.36–1.93) 0.866 0.669 |
| Ethnicity/source of control | |||||||
| Asian/PB | 5 | 3019/3544 | 0.94 (0.67–1.32) 0.905 0.729 | 0.83 (0.36–1.93) 0.859 0.669 | 1.00 (0.66–1.50) 0.904 0.994 | 0.96 (0.67–1.40) 0.886 0.848 | 0.83 (0.36–1.93) 0.866 0.669 |
| Cancer Type | |||||||
| BCa | 1 | 375/375 | 0.76 (0.37–1.58) - 0.462 | 0.74 (0.17–3.35) - 0.700 | 0.77 (0.28–2.09) - 0.610 | 0.76 (0.33–1.76) - 0.526 | 0.75 (0.17–3.37) - 0.705 |
| Other cancers | 4 | 2644/3169 | 1.00 (0.68–1.46) 0.896 0.462 | 0.88 (0.32–2.42) - 0.799 | 1.05 (0.67–1.65) 0.868 0.823 | 1.02 (0.68–1.54) 0.886 0.919 | 0.87 (0.32–2.42) - 0.796 |
| Lys87Glu | |||||||
| Total | 3 | 749/1919 | 1.05 (0.93–1.18) 0.968 0.430 | 1.11 (0.88–1.42) 0.953 0.377 | 0.96(0.78–1.18) 0.647 0.722 | 1.01 (0.83–1.22) 0.863 0.928 | 1.13 (0.93–1.38) 0.604 0.222 |
| Ethnicity | |||||||
| Caucasian | 3 | 749/1919 | 1.05 (0.93–1.18) 0.968 0.430 | 1.11 (0.88–1.42) 0.953 0.377 | 0.96 (0.78–1.18) 0.647 0.722 | 1.01 (0.83–1.22) 0.863 0.928 | 1.13 (0.93–1.38) 0.604 0.222 |
| Cancer Type | |||||||
| BCa | 2 | 543/1092 | 1.06 (0.91–1.22) 0.841 0.458 | 1.13 (0.85–1.51) 0.810 0.398 | 0.92 (0.72–1.17) 0.544 0.496 | 0.98 (0.78–1.23) 0.745 0.875 | 1.20 (0.94–1.53) 0.508 0.152 |
| Other cancers | 1 | 206/827 | 1.03 (0.83–1.28) - 0.756 | 1.07 (0.70–1.66) - 0.745 | 1.08 (0.74–1.59) - 0.684 | 1.08 (0.75–1.56) - 0.678 | 1.02 (0.72–1.43) - 0.921 |
| Source of control | |||||||
| HB | 2 | 543/1092 | 1.06 (0.91–1.22) 0.841 0.458 | 1.13 (0.85–1.51) 0.810 0.398 | 0.92 (0.72–1.17) 0.544 0.496 | 0.98 (0.78–1.23) 0.745 0.875 | 1.20 (0.94–1.530 0.508 0.152 |
| PB | 1 | 206/827 | 1.03 (0.83–1.28) - 0.756 | 1.07 (0.70–1.66) - 0.745 | 1.08 (0.74–1.59) - 0.684 | 1.08 (0.75–1.56) - 0.678 | 1.02 (0.72–1.43) - 0.921 |
Ph: P value of Q-test for heterogeneity test
BCa Bladder Cancer, HB hospital-based, PB population-based
Fig. 2Forest plot of allelic contrast of MMP-8 C-799 T polymorphism in the stratified analyses by cancer type (fixed-effects)
Fig. 3Forest plot of cancer risk associated with MMP-8 C-799 T variant (allelic comparison of T-allele vs. C-allele, fixed-effects) in the stratified analyses by ethnicity
Fig. 4In silico analysis of MMP-8 expression in bladder cancer (a). Association of the expression of MMP-8 and the overall survival (OS) time among bladder cancer participants (b, c)
Fig. 5Polyphen2 bioinformatics tools for assessing the association between MMP-8 Lys460Thr (K460 T, rs35866072, a), Lys87Glu (K87E, rs1940475, b) variants and protein damaging (The place of black line represents the score)
Fig. 6Begg’s funnel plot of standard error for investigating publication bias of MMP-8 C-799 T (a), Lys460Thr (b), and Lys87Glu (c) variants under T-allele vs. C-allele genetic model