Literature DB >> 31636811

DEEP LEARNING-BASED ASSESSMENT OF TUMOR-ASSOCIATED STROMA FOR DIAGNOSING BREAST CANCER IN HISTOPATHOLOGY IMAGES.

Babak Ehteshami Bejnordi1,2, Jimmy Lin3, Ben Glass2, Maeve Mullooly4, Gretchen L Gierach4, Mark E Sherman5, Nico Karssemeijer1, Jeroen van der Laak1,6, Andrew H Beck2.   

Abstract

Diagnosis of breast carcinomas has so far been limited to the morphological interpretation of epithelial cells and the assessment of epithelial tissue architecture. Consequently, most of the automated systems have focused on characterizing the epithelial regions of the breast to detect cancer. In this paper, we propose a system for classification of hematoxylin and eosin (H&E) stained breast specimens based on convolutional neural networks that primarily targets the assessment of tumor-associated stroma to diagnose breast cancer patients. We evaluate the performance of our proposed system using a large cohort containing 646 breast tissue biopsies. Our evaluations show that the proposed system achieves an area under ROC of 0.92, demonstrating the discriminative power of previously neglected tumor associated stroma as a diagnostic biomarker.

Entities:  

Keywords:  Breast Cancer; Convolutional Neural Networks; Digital pathology; Tumor Associated Stroma

Year:  2017        PMID: 31636811      PMCID: PMC6802272          DOI: 10.1109/ISBI.2017.7950668

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  8 in total

1.  Systematic analysis of breast cancer morphology uncovers stromal features associated with survival.

Authors:  Andrew H Beck; Ankur R Sangoi; Samuel Leung; Robert J Marinelli; Torsten O Nielsen; Marc J van de Vijver; Robert B West; Matt van de Rijn; Daphne Koller
Journal:  Sci Transl Med       Date:  2011-11-09       Impact factor: 17.956

2.  Automated Detection of DCIS in Whole-Slide H&E Stained Breast Histopathology Images.

Authors:  Babak Ehteshami Bejnordi; Maschenka Balkenhol; Geert Litjens; Roland Holland; Peter Bult; Nico Karssemeijer; Jeroen A W M van der Laak
Journal:  IEEE Trans Med Imaging       Date:  2016-04-05       Impact factor: 10.048

Review 3.  Fibroblasts in cancer.

Authors:  Raghu Kalluri; Michael Zeisberg
Journal:  Nat Rev Cancer       Date:  2006-05       Impact factor: 60.716

4.  Comparison of mammographic density assessed as volumes and areas among women undergoing diagnostic image-guided breast biopsy.

Authors:  Gretchen L Gierach; Berta M Geller; John A Shepherd; Deesha A Patel; Pamela M Vacek; Donald L Weaver; Rachael E Chicoine; Ruth M Pfeiffer; Bo Fan; Amir Pasha Mahmoudzadeh; Jeff Wang; Jason M Johnson; Sally D Herschorn; Louise A Brinton; Mark E Sherman
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2014-08-19       Impact factor: 4.254

5.  Computerized classification of intraductal breast lesions using histopathological images.

Authors:  M Murat Dundar; Sunil Badve; Gokhan Bilgin; Vikas Raykar; Rohit Jain; Olcay Sertel; Metin N Gurcan
Journal:  IEEE Trans Biomed Eng       Date:  2011-02-04       Impact factor: 4.538

6.  Relationship of mammographic density and gene expression: analysis of normal breast tissue surrounding breast cancer.

Authors:  Xuezheng Sun; Gretchen L Gierach; Rupninder Sandhu; Tyisha Williams; Bentley R Midkiff; Jolanta Lissowska; Ewa Wesolowska; Norman F Boyd; Nicole B Johnson; Jonine D Figueroa; Mark E Sherman; Melissa A Troester
Journal:  Clin Cancer Res       Date:  2013-08-05       Impact factor: 12.531

Review 7.  Cancer-Associated Fibroblasts: Their Characteristics and Their Roles in Tumor Growth.

Authors:  Kazuyoshi Shiga; Masayasu Hara; Takaya Nagasaki; Takafumi Sato; Hiroki Takahashi; Hiromitsu Takeyama
Journal:  Cancers (Basel)       Date:  2015-12-11       Impact factor: 6.639

8.  Computational pathology to discriminate benign from malignant intraductal proliferations of the breast.

Authors:  Fei Dong; Humayun Irshad; Eun-Yeong Oh; Melinda F Lerwill; Elena F Brachtel; Nicholas C Jones; Nicholas W Knoblauch; Laleh Montaser-Kouhsari; Nicole B Johnson; Luigi K F Rao; Beverly Faulkner-Jones; David C Wilbur; Stuart J Schnitt; Andrew H Beck
Journal:  PLoS One       Date:  2014-12-09       Impact factor: 3.240

  8 in total
  3 in total

1.  Development and validation of a deep learning algorithm for improving Gleason scoring of prostate cancer.

Authors:  Kunal Nagpal; Davis Foote; Yun Liu; Po-Hsuan Cameron Chen; Ellery Wulczyn; Fraser Tan; Niels Olson; Jenny L Smith; Arash Mohtashamian; James H Wren; Greg S Corrado; Robert MacDonald; Lily H Peng; Mahul B Amin; Andrew J Evans; Ankur R Sangoi; Craig H Mermel; Jason D Hipp; Martin C Stumpe
Journal:  NPJ Digit Med       Date:  2019-06-07

Review 2.  Tabu Search and Machine-Learning Classification of Benign and Malignant Proliferative Breast Lesions.

Authors:  Habib Dhahri; Ines Rahmany; Awais Mahmood; Eslam Al Maghayreh; Wail Elkilani
Journal:  Biomed Res Int       Date:  2020-02-27       Impact factor: 3.411

3.  Deep Learning Image Analysis of Benign Breast Disease to Identify Subsequent Risk of Breast Cancer.

Authors:  Adithya D Vellal; Korsuk Sirinukunwattan; Kevin H Kensler; Gabrielle M Baker; Andreea L Stancu; Michael E Pyle; Laura C Collins; Stuart J Schnitt; James L Connolly; Mitko Veta; A Heather Eliassen; Rulla M Tamimi; Yujing J Heng
Journal:  JNCI Cancer Spectr       Date:  2021-01-11
  3 in total

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