Literature DB >> 31633695

Characterization of Functionally Associated miRNAs in Glioblastoma and their Engineering into Artificial Clusters for Gene Therapy.

Vivek Bhaskaran1, Pierpaolo Peruzzi2.   

Abstract

The biological relevance of microRNAs (miRNAs) in health and disease significantly relies on specific combinations of many simultaneously deregulated miRNAs rather than the action of a single miRNA. The characterization of these specific miRNAs modules is a fundamental step in maximizing their use in therapy. This is extremely relevant because their combinatorial attributes can be practically exploited. Described here is a method to define a specific miRNA signature relevant to the control of oncogenic chromatin repressors in glioblastoma. The approach first defines a general group of miRNAs that are deregulated in tumors in comparison to normal tissue. The analysis is further refined by differential culture conditions, underscoring a subgroup of miRNAs that are co-expressed simultaneously during specific cellular states. Finally, the miRNAs that satisfy these filters are combined into an artificial polycistronic transgenes, which is based on a scaffold of naturally existing miRNA clusters genes, then used for overexpression of these miRNA modules into receiving cells.

Entities:  

Year:  2019        PMID: 31633695      PMCID: PMC7158918          DOI: 10.3791/60215

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  31 in total

1.  MicroRNA Expression Profiling Using Agilent One-Color Microarray.

Authors:  Carmela Dell'Aversana; Cristina Giorgio; Lucia Altucci
Journal:  Methods Mol Biol       Date:  2017

2.  Frequent deletions and down-regulation of micro- RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia.

Authors:  George Adrian Calin; Calin Dan Dumitru; Masayoshi Shimizu; Roberta Bichi; Simona Zupo; Evan Noch; Hansjuerg Aldler; Sashi Rattan; Michael Keating; Kanti Rai; Laura Rassenti; Thomas Kipps; Massimo Negrini; Florencia Bullrich; Carlo M Croce
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-14       Impact factor: 11.205

3.  A microRNA polycistron as a potential human oncogene.

Authors:  Lin He; J Michael Thomson; Michael T Hemann; Eva Hernando-Monge; David Mu; Summer Goodson; Scott Powers; Carlos Cordon-Cardo; Scott W Lowe; Gregory J Hannon; Scott M Hammond
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

Review 4.  Causes and consequences of microRNA dysregulation in cancer.

Authors:  Carlo M Croce
Journal:  Nat Rev Genet       Date:  2009-10       Impact factor: 53.242

Review 5.  Regulation of microRNA biogenesis and its crosstalk with other cellular pathways.

Authors:  Thomas Treiber; Nora Treiber; Gunter Meister
Journal:  Nat Rev Mol Cell Biol       Date:  2019-01       Impact factor: 94.444

6.  ViennaRNA Package 2.0.

Authors:  Ronny Lorenz; Stephan H Bernhart; Christian Höner Zu Siederdissen; Hakim Tafer; Christoph Flamm; Peter F Stadler; Ivo L Hofacker
Journal:  Algorithms Mol Biol       Date:  2011-11-24       Impact factor: 1.405

7.  miRDB: an online resource for microRNA target prediction and functional annotations.

Authors:  Nathan Wong; Xiaowei Wang
Journal:  Nucleic Acids Res       Date:  2014-11-05       Impact factor: 16.971

8.  Analysis of microRNA and Gene Expression Profiles in Alzheimer's Disease: A Meta-Analysis Approach.

Authors:  Shirin Moradifard; Moslem Hoseinbeyki; Shahla Mohammad Ganji; Zarrin Minuchehr
Journal:  Sci Rep       Date:  2018-03-19       Impact factor: 4.379

9.  Genome-wide, integrative analysis implicates microRNA dysregulation in autism spectrum disorder.

Authors:  Ye E Wu; Neelroop N Parikshak; T Grant Belgard; Daniel H Geschwind
Journal:  Nat Neurosci       Date:  2016-08-29       Impact factor: 24.884

10.  The functional synergism of microRNA clustering provides therapeutically relevant epigenetic interference in glioblastoma.

Authors:  Vivek Bhaskaran; Michal O Nowicki; Mahmoud Idriss; Miguel A Jimenez; Gianmarco Lugli; Josie L Hayes; Ahmad Bakur Mahmoud; Rachel E Zane; Carmela Passaro; Keith L Ligon; Daphne Haas-Kogan; Agnieszka Bronisz; Jakub Godlewski; Sean E Lawler; E Antonio Chiocca; Pierpaolo Peruzzi
Journal:  Nat Commun       Date:  2019-01-25       Impact factor: 14.919

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  1 in total

1.  Micro-RNA 122 and micro-RNA 96 affected human osteosarcoma biological behavior and associated with prognosis of patients with osteosarcoma.

Authors:  Bin Liu; Shuqiang Yao; Jiping Zhou
Journal:  Biosci Rep       Date:  2020-12-23       Impact factor: 3.840

  1 in total

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