Literature DB >> 31628545

Inferences of environmental and biotic effects on patterns of eukaryotic alpha and beta diversity for the spring systems of Ash Meadows, Nevada.

Elizabeth L Paulson1, Andrew P Martin2.   

Abstract

Freshwater springs are important ecosystems. In the arid regions of North America, groundwater extraction has caused the desiccation of springs and the extinction of taxa. To better describe the biodiversity of freshwater springs in the hope of establishing a sensitive approach for monitoring the predicted change in spring systems, we used high-resolution genetic methods to estimate the alpha and beta diversity of 19 springs and two reservoirs within the Ash Meadows National Wildlife Refuge in southwestern Nevada. We discovered a large number of distinct taxa based on eukaryote ribosomal gene sequences and show water temperature, spring size, and the presence or absence of non-native predators predicts alpha diversity, and temperature predicts beta diversity. Our study highlights how DNA data support inferences of environmental factors influencing community diversity and demonstrates the method may be an important tool for monitoring ecological communities.

Keywords:  Alpha diversity; Beta diversity; Ecological communities; Eukaryotes; Groundwater springs

Mesh:

Year:  2019        PMID: 31628545     DOI: 10.1007/s00442-019-04526-6

Source DB:  PubMed          Journal:  Oecologia        ISSN: 0029-8549            Impact factor:   3.225


  32 in total

Review 1.  Selecting indicator species to monitor ecological integrity: a review.

Authors:  Vincent Carignan; Marc-André Villard
Journal:  Environ Monit Assess       Date:  2002-08       Impact factor: 2.513

2.  Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA.

Authors:  Jon Bråte; Ramiro Logares; Cédric Berney; Dan Kristofer Ree; Dag Klaveness; Kjetill S Jakobsen; Kamran Shalchian-Tabrizi
Journal:  ISME J       Date:  2010-04-15       Impact factor: 10.302

3.  Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.

Authors:  Qiong Wang; George M Garrity; James M Tiedje; James R Cole
Journal:  Appl Environ Microbiol       Date:  2007-06-22       Impact factor: 4.792

4.  Model projections of an imminent transition to a more arid climate in southwestern North America.

Authors:  Richard Seager; Mingfang Ting; Isaac Held; Yochanan Kushnir; Jian Lu; Gabriel Vecchi; Huei-Ping Huang; Nili Harnik; Ants Leetmaa; Ngar-Cheung Lau; Cuihua Li; Jennifer Velez; Naomi Naik
Journal:  Science       Date:  2007-04-05       Impact factor: 47.728

5.  Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes.

Authors:  Jean-François Mangot; Isabelle Domaizon; Najwa Taib; Nemr Marouni; Emilie Duffaud; Gisèle Bronner; Didier Debroas
Journal:  Environ Microbiol       Date:  2013-01-09       Impact factor: 5.491

6.  Groundwater Ecosystems Vary with Land Use across a Mixed Agricultural Landscape.

Authors:  K L Korbel; P J Hancock; P Serov; R P Lim; G C Hose
Journal:  J Environ Qual       Date:  2013 Mar-Apr       Impact factor: 2.751

7.  Sequence analysis of the ribosomal internal transcribed spacer DNA of the crayfish parasite Psorospermium haeckeli.

Authors:  E Bangyeekhun; H J Ryynänen; P Henttonen; J V Huner; L Cerenius; K Söderhäll
Journal:  Dis Aquat Organ       Date:  2001-10-08       Impact factor: 1.802

8.  Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity.

Authors:  Viola Nolte; Ram Vinay Pandey; Steffen Jost; Ralph Medinger; Birgit Ottenwälder; Jens Boenigk; Christian Schlötterer
Journal:  Mol Ecol       Date:  2010-07-01       Impact factor: 6.185

9.  Revealing the unexplored fungal communities in deep groundwater of crystalline bedrock fracture zones in Olkiluoto, Finland.

Authors:  Elina Sohlberg; Malin Bomberg; Hanna Miettinen; Mari Nyyssönen; Heikki Salavirta; Minna Vikman; Merja Itävaara
Journal:  Front Microbiol       Date:  2015-06-09       Impact factor: 5.640

10.  Pyrosequencing analysis of the protist communities in a High Arctic meromictic lake: DNA preservation and change.

Authors:  Sophie Charvet; Warwick F Vincent; André Comeau; Connie Lovejoy
Journal:  Front Microbiol       Date:  2012-12-20       Impact factor: 5.640

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