Literature DB >> 31624862

Nomenclature report 2019: major histocompatibility complex genes and alleles of Great and Small Ape and Old and New World monkey species.

Natasja G de Groot1, Nel Otting2, Giuseppe Maccari3,4, James Robinson4,5, John A Hammond3, Antoine Blancher6,7, Bernard A P Lafont8, Lisbeth A Guethlein9, Emily E Wroblewski10, Steven G E Marsh4,5, Takashi Shiina11, Lutz Walter12, Linda Vigilant13, Peter Parham9, David H O'Connor14, Ronald E Bontrop2,15.   

Abstract

The major histocompatibility complex (MHC) is central to the innate and adaptive immune responses of jawed vertebrates. Characteristic of the MHC are high gene density, gene copy number variation, and allelic polymorphism. Because apes and monkeys are the closest living relatives of humans, the MHCs of these non-human primates (NHP) are studied in depth in the context of evolution, biomedicine, and conservation biology. The Immuno Polymorphism Database (IPD)-MHC NHP Database (IPD-MHC NHP), which curates MHC data of great and small apes, as well as Old and New World monkeys, has been upgraded. The curators of the database are responsible for providing official designations for newly discovered alleles. This nomenclature report updates the 2012 report, and summarizes important nomenclature issues and relevant novel features of the IPD-MHC NHP Database.

Entities:  

Keywords:  Database; IPD; MHC; NHP; Nomenclature

Mesh:

Year:  2019        PMID: 31624862     DOI: 10.1007/s00251-019-01132-x

Source DB:  PubMed          Journal:  Immunogenetics        ISSN: 0093-7711            Impact factor:   2.846


  66 in total

1.  Nomenclature for the major histocompatibility complexes of different species: a proposal.

Authors:  J Klein; R E Bontrop; R L Dawkins; H A Erlich; U B Gyllensten; E R Heise; P P Jones; P Parham; E K Wakeland; D I Watkins
Journal:  Immunogenetics       Date:  1990       Impact factor: 2.846

2.  Survey of major histocompatibility complex class II diversity in pig-tailed macaques.

Authors:  Julie A Karl; Katelyn E Heimbruch; Claire E Vriezen; Cassandra J Mironczuk; Dawn M Dudley; Roger W Wiseman; David H O'Connor
Journal:  Immunogenetics       Date:  2014-08-17       Impact factor: 2.846

3.  Seven novel MHC class I alleles identified in Cercopithecus mitis.

Authors:  B Liu; X Yan; J W Fan; L Zeng; Z Z Sun
Journal:  Tissue Antigens       Date:  2014-03-27

4.  Bonobos Maintain Immune System Diversity with Three Functional Types of MHC-B.

Authors:  Emily E Wroblewski; Lisbeth A Guethlein; Paul J Norman; Yingying Li; Christiana M Shaw; Alex S Han; Jean-Bosco N Ndjango; Steve Ahuka-Mundeke; Alexander V Georgiev; Martine Peeters; Beatrice H Hahn; Peter Parham
Journal:  J Immunol       Date:  2017-03-27       Impact factor: 5.422

5.  Restricted MHC class I A locus diversity in olive and hybrid olive/yellow baboons from the Southwest National Primate Research Center.

Authors:  Rebecca A Morgan; Julie A Karl; Hailey E Bussan; Katelyn E Heimbruch; David H O'Connor; Dawn M Dudley
Journal:  Immunogenetics       Date:  2018-03-28       Impact factor: 2.846

6.  Characterization of MHC class I alleles in sooty mangabeys as a tool for evaluating cellular immunity in natural hosts of SIV infection.

Authors:  Zichun Wang; Benjamin Metcalf; Melissa Kasheta; Caitlin Kasala-Hallinan; Dollnovan Tran; R Paul Johnson; James G Else; Julie Karl; David O'Connor; Cristian Apetrei; Amitinder Kaur
Journal:  Immunogenetics       Date:  2015-07-01       Impact factor: 2.846

7.  Identification of MHC class I sequences in four species of Macaca of China.

Authors:  Xiang Yan; Aixue Li; Lin Zeng; Yuhua Cao; Jianbin He; Longbao Lv; Lihua Sui; Huahu Ye; Junwen Fan; Xiaoxia Cui; Zhaozeng Sun
Journal:  Immunogenetics       Date:  2013-09-18       Impact factor: 2.846

8.  Discovery of novel MHC-class I alleles and haplotypes in Filipino cynomolgus macaques (Macaca fascicularis) by pyrosequencing and Sanger sequencing: Mafa-class I polymorphism.

Authors:  Takashi Shiina; Yukiho Yamada; Alice Aarnink; Shingo Suzuki; Anri Masuya; Sayaka Ito; Daisuke Ido; Hisashi Yamanaka; Chizuru Iwatani; Hideaki Tsuchiya; Hirohito Ishigaki; Yasushi Itoh; Kazumasa Ogasawara; Jerzy K Kulski; Antoine Blancher
Journal:  Immunogenetics       Date:  2015-09-08       Impact factor: 2.846

9.  Signature Patterns of MHC Diversity in Three Gombe Communities of Wild Chimpanzees Reflect Fitness in Reproduction and Immune Defense against SIVcpz.

Authors:  Emily E Wroblewski; Paul J Norman; Lisbeth A Guethlein; Rebecca S Rudicell; Miguel A Ramirez; Yingying Li; Beatrice H Hahn; Anne E Pusey; Peter Parham
Journal:  PLoS Biol       Date:  2015-05-28       Impact factor: 8.029

10.  IPD-MHC: nomenclature requirements for the non-human major histocompatibility complex in the next-generation sequencing era.

Authors:  Giuseppe Maccari; James Robinson; Ronald E Bontrop; Nel Otting; Natasja G de Groot; Chak-Sum Ho; Keith T Ballingall; Steven G E Marsh; John A Hammond
Journal:  Immunogenetics       Date:  2018-07-19       Impact factor: 2.846

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  6 in total

1.  Immunogenetics special issue 2020: nomenclature, databases, and bioinformatics in immunogenetics.

Authors:  Can Kesmir; Ronald Bontrop
Journal:  Immunogenetics       Date:  2020-02       Impact factor: 2.846

2.  Evolution of HLA-F and its orthologues in primate species: a complex tale of conservation, diversification and inactivation.

Authors:  N Otting; N G de Groot; R E Bontrop
Journal:  Immunogenetics       Date:  2020-11-12       Impact factor: 2.846

3.  Genomic targets for high-resolution inference of kinship, ancestry and disease susceptibility in orang-utans (genus: Pongo).

Authors:  Graham L Banes; Emily D Fountain; Alyssa Karklus; Hao-Ming Huang; Nian-Hong Jang-Liaw; Daniel L Burgess; Jennifer Wendt; Cynthia Moehlenkamp; George F Mayhew
Journal:  BMC Genomics       Date:  2020-12-07       Impact factor: 3.969

4.  Dynamic evolution of Mhc haplotypes in cynomolgus macaques of different geographic origins.

Authors:  Natasja G de Groot; Nanine de Groot; Annemiek J M de Vos-Rouweler; Annet Louwerse; Jesse Bruijnesteijn; Ronald E Bontrop
Journal:  Immunogenetics       Date:  2022-01-27       Impact factor: 3.330

5.  Characterization of 100 extended major histocompatibility complex haplotypes in Indonesian cynomolgus macaques.

Authors:  Cecilia G Shortreed; Roger W Wiseman; Julie A Karl; Hailey E Bussan; David A Baker; Trent M Prall; Amelia K Haj; Gage K Moreno; Maria Cecilia T Penedo; David H O'Connor
Journal:  Immunogenetics       Date:  2020-02-29       Impact factor: 2.846

6.  Similar patterns of genetic diversity and linkage disequilibrium in Western chimpanzees (Pan troglodytes verus) and humans indicate highly conserved mechanisms of MHC molecular evolution.

Authors:  Christelle Vangenot; José Manuel Nunes; Gaby M Doxiadis; Estella S Poloni; Ronald E Bontrop; Natasja G de Groot; Alicia Sanchez-Mazas
Journal:  BMC Evol Biol       Date:  2020-09-15       Impact factor: 3.260

  6 in total

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