Literature DB >> 31616847

Homocubane Chemistry: Synthesis and Structures of Mono- and Dicobaltaheteroborane Analogues of Tris- and Tetrahomocubanes.

Kriti Pathak1, Rongala Ramalakshmi1, Mohammad Zafar1, Sukanya Bagchi1, Thierry Roisnel2, Sundargopal Ghosh1.   

Abstract

Room-temperature reactions between [Cp*CoCl]2 (Cp* = η5-C5Me5) and large excess of [BH2E3]Li (E = S or Se) led to the formation of homocubane derivatives, 1-7. These species are bimetallic tetrahomocubane, [(Cp*Co)2(μ-S)4(μ3-S)4B2H2], 1; bimetallic trishomocubane isomers, [(Cp*Co)2(μ-S)3(μ3-S)4B2H2], 2 and 3; monometallic trishomocubanes, [M(μ-E)3(μ3-E)4B3H3] [4: M = Cp*Co, E = S; 5: M = Cp*Co, E = Se and 6: M = {(Cp*Co)2(μ-H)(μ3-Se)2}Co, E = Se], and bimetallic homocubane, [(Cp*Co)2(μ-Se)(μ3-Se)4B2H2], 7. As per our knowledge, 1 is the first isolated and structurally characterized parent prototype of the 1,2,2',4 isomer of tetrahomocubane, while 3, 4, and 5 are the analogues of parent D 3-trishomocubane. Compounds 2 and 3 are the structural isomers in which the positions of the μ-S ligands in the trishomocubane framework are altered. Compound 6 is an example of a unique vertex-fused trishomocubane derivative, in which the D 3-trishomocubane [Co(μ-Se)3(μ3-Se)4B3H3] moiety is fused with an exopolyhedral trigonal bipyramid (tbp) moiety [(Cp*Co)2(μ-H)(μ3-Se)2}Co]. Multinuclear NMR and infrared spectroscopy, mass spectrometry, and single crystal X-ray diffraction analyses were employed to characterize all the compounds in solution. Bonding in these homocubane analogues has been elucidated computationally by density functional theory methods.
Copyright © 2019 American Chemical Society.

Entities:  

Year:  2019        PMID: 31616847      PMCID: PMC6788070          DOI: 10.1021/acsomega.9b02568

Source DB:  PubMed          Journal:  ACS Omega        ISSN: 2470-1343


Introduction

Homocubanes[1] are noncyclopropanoid homologues of cubane[2] (C8H8) derived by the introduction of one, two, three, and so forth, methylene groups into the cubane skeleton. Cubane and its derivatives were the first saturated polycyclic caged hydrocarbons to gather interest because of their potential applications in the production of high energy fuels.[2c,3] Despite the ease of storage, handling, and proficiency under standard conditions, the synthesis of cubane is challenging as it involves multiple steps.[2d,4] The rich chemistry of these molecules, by virtue of their inherent strain energy, has been widely exploited in the recent past.[1a,4,5] Despite notable growth in this field, the quest for homocubane-type species met with little success. Adams and co-workers reported homocubanes of cobalt (I–III) from the reaction of [CpCo(CO)2] with chalcogen powders.[6] Even though there are reports of homocubane-type molecules combining transition metals and chalcogen elements[7] (I–IV, Chart ), examples of such molecules involving boron in the cubane core, are rather limited.
Chart 1

Different Types of Homocubane Analogues; I–VII Previous Work, 1 This Work.

Boron is a typical electron-deficient nonmetal element in group 13 with unique structural and bonding properties, and because of this, it can form diverse clusters with both the main group as well as transition metal elements.[8−10] In addition, the incorporation of boron into transition metal clusters can alter the electronic properties. In line with our motivation to establish a new synthetic route for transition-metal boron compounds with interesting molecular structures,[8−11] we found that [(Cp*Mo)2B4E2] (E = S, Se or Te) and nido-[(Cp*RuH)2B3H7] clusters are very good synthons for synthesizing cubane-type molecules.[8] Recently, we have reported various trimetallic cubane-type clusters from the [Cp*TaCl4] and thioborate ligand [BH2S3]Li reaction.[9b] However, homocubane type of species eluded us till the dimetallapentaborane analogue, nido-[(Cp*RuH)2B3H7], generated homocubane species [(Cp*Ru)2Mn(CO)3(CS2H2)B3H4] (V) when treated with [Mn2(CO)10].[11a] Subsequently, the isolation of electron-precise 1,3-bishomocubane derivatives [(Cp*Rh)2(μ-E)2(μ3-E)4B2H2], (VI: E = S; VII: E = Se), obtained from the reaction between nido-[(Cp*Rh)2B3H7] and chalcogen powders,[11b] encouraged us to extend this approach to the cobalt system. In this article, we report the isolation and structural elucidation of dicobaltaheteroborane analogues of higher order homocubanes.

Results and Discussion

Reactivity of [Cp*CoCl]2 with [BH2E3]Li; (E = S or Se)

The reaction of [Cp*CoCl]2 with 10 equiv. of [BH2E3]Li (E = S or Se)[12] at room temperature, yielded a series of cobaltachalcogenaborane analogues of higher order homocubanes, 1–7 in 6–17% yields (Scheme ). The reactions also yielded few other compounds albeit in less yields and hence could not be isolated. Reaction with [BH2Te3]Li led to the decomposition of the starting materials. Even though these compounds formed in a mixture, it was possible to separate them as crystalline solids through chromatographic workup by preparative thin-layer chromatography (TLC). The detailed spectral and structural characterizations of 1–7 are discussed below.
Scheme 1

Syntheses of Homocubane Analogues 1–7

Tetrahomocubane Analogue, 1

Compound 1 was isolated along with 2 as inseparable brown solids. As we were unable to separate these two molecules by TLC, the compounds were primarily characterized by combined NMR and mass spectrometric data.[13] The combined mass spectrum of 1 and 2 obtained by the electron spray ionisation (ESI) technique, exhibits molecular ion peaks at m/z 667.9108 and 635.9366. The room-temperature 11B{1H} NMR displays four chemical shifts in the range δ = 5.2 to −13.9 ppm. The 1H NMR displays three chemical shifts for Cp* protons at δ = 1.32, 1.20, and 1.18 ppm. The 1H resonances at δ = 1.32 and 1.18 ppm appeared with equal intensities. The 13C{1H} NMR also displays chemical shifts that corroborate with three Cp* environments. The infrared (IR) spectrum shows broad bands in the 2519–2363 cm–1 region because of stretching frequencies of the terminal B–H. The core geometries of the compounds, 1 and 2, could not be interpreted unless an X-ray structure analysis for one of them was done. In an attempt to separate compounds 1 and 2 by fractional crystallization, we could manage to get few crystals of 1 from the solution that helped us determine the crystal structure of 1. The X-ray structural analysis established the structural identity of 1. It crystallizes in an orthorhombic crystal system with the Pnma space group. The solid-state X-ray structure of 1, shown in Figure , presents an open-core cubane with four μ-S ligands bridging four elongated B–S edges of the cubane framework [Co2S4B2]. The number and the positions of these μ-S bridges, in an otherwise inherently cubane structure, are the most intriguing features of 1. Based on these features, the structure may be considered as a dicobaltathiaborane analogue of the 1,2,2′,4-isomer of parent tetrahomocubane [C12H16] wherein three of the μ-S ligands are positioned around B1 bridging B1–S1, B1–S4, and B1–S4 edges of the cube while one μ-S ligand is at B2, bridging the B2–S6 edge. Even though both the boron atoms in 1 are in a tetrahedral environment with three S and one H, the S–B–S bond angles deviate abnormally from 109.5° (maximum deviation of 21.7°). The planarity of the square face Co–S–Co–S in 1 is also noticeably lost (maximum deviation is 11.9°). The average bond length for B–S and Co–S of 1.866 and 2.233 Å, respectively, is comparable with metallathiaborane clusters[14] (1.875 and 2.351 Å).
Figure 1

Molecular structure and labelling diagram of 1. Thermal ellipsoids are drawn at a 40% probability level. Selected bond lengths [Å] and angles (°): Co1–S1 2.140(10), Co1–S6 2.306(10), B1–S2 1.869(12), B1–S3 1.651(7), B2–S4 2.049(12), B2–S5 1.897(16), S3–B1–S2 112.8(5), S3–B1–S3 131.2(9), S5–B2–S4 101.4(6), S4–B2–S4 97.8(8).

Molecular structure and labelling diagram of 1. Thermal ellipsoids are drawn at a 40% probability level. Selected bond lengths [Å] and angles (°): Co1–S1 2.140(10), Co1–S6 2.306(10), B1–S2 1.869(12), B1–S3 1.651(7), B2–S4 2.049(12), B2–S5 1.897(16), S3–B1–S2 112.8(5), S3–B1–S3 131.2(9), S5–B2–S4 101.4(6), S4–B2–S4 97.8(8). Compound 1 possesses crystallographic mirror symmetry, which is defined by the B1–S2–S1–S6–S5–B2 plane. This makes the Co atoms, residing on either side of the plane, chemically equivalent. Therefore, all the Cp* protons should correspond to a single chemical shift in the 1H NMR spectrum. Interestingly, even though the mirror plane passes through two boron atoms (B1 and B2), their chemical environments are dissimilar. While B1 is connected to three μ-S units, B2 is connected to two μ3-S and one μ-S units. Although it was not possible to locate the terminal B–H protons of 1 by X-ray diffraction analysis, the 1H{11B} NMR and IR spectra along with the mass spectrometric analysis confirmed their presence. Synthesis of higher order homocubanes or their derivatives is still a big challenge to synthetic chemists. The only tetrahomocubane core reported till date is observed in tetraasteran-1,4,5,8-tetracarboxylic acid, as pentacyclo[6.4.0.02,7.04,11.05,10]dodecane, (1,3,5,7 isomer of tetrahomocubane;[15a]Figure ). Therefore, to the best of our knowledge, 1 is the first prototype of pentacyclo[6.3.1.02,6.03,11.05,10]dodecane or 1,2,2′,4 isomer of tetrahomocubane (Figure ).
Figure 2

Schematic drawing of (a) C12H16, pentacyclo[6.4.0.02,7.04,11.05,10]dodecane;[15] (b) the dicobaltathiaborane analogue of C12H16, 1, pentacyclo[6.3.1.02,6.03,11.05,10]dodecane.

Schematic drawing of (a) C12H16, pentacyclo[6.4.0.02,7.04,11.05,10]dodecane;[15] (b) the dicobaltathiaborane analogue of C12H16, 1, pentacyclo[6.3.1.02,6.03,11.05,10]dodecane. In general, most of the cubanes and their derivatives are electron precise species following two center–two electron (2c–2e) bonding, wherein the metals obey the 18-electron rule while the main group elements follow the octet rule.[16] Compound 1, a dimetalla analogue of tetrahomocubane (C12H16) [cve = 64; {8 (CH) × 5 + 4 (CH2) × 6}], possesses 84 cve count [2 (Cp*Co) × 14 + 8 (S/Se) × 6 + 2 (BH) × 4] thereby satisfying the 2c–2e formalism. A similar situation has also been observed for other bishomocubane derivatives [(Cp*Rh)2(μ-E)2(μ3-E)4B2H2] (E = S or Se) and [(Cp*Ru)2(μ-E)2(μ3-E)4B2H2] (E = S or Se).[11b,17]

Bimetallic Analogues of Trishomocubanes, 2 and 3

Compound 3 was isolated in a moderate yield, as a brown solid. The mass spectrum of 3 displayed a molecular ion peak at m/z 635.9366 which suggested the molecular formula C20H32B2S7Co2. The 11B{1H} NMR of 3, at room temperature, showed two chemical shifts at δ = 7.1 and 5.2 ppm. The 1H NMR displayed two signals at δ = 1.36, and 1.19 ppm for the Cp* protons signifying the possibility of two chemically distinct boron and metal environments. Crystals suitable for X-ray diffraction were obtained by cooling a concentrated hexane/CH2Cl2 (80:20) solution at −10 °C. The X-ray diffraction analysis of 3 revealed a trishomocubane core, which is crystallized in an orthorhombic crystal system and Pnma space group. As represented in Figure , two structural residues are present in the unit cell of the solid-state crystal structure (additional details of the disorder are discussed under the X-ray structure details in the Supporting Information) crystal structures were constructed by segregating the highly entangled molecules into two meaningful core geometries and were found to exist as two interpenetrating disordered molecules related closely by a mirror plane.[18] In addition to this, both the residues corresponded to identical structural parameters thereby establishing themselves as mirror equivalents or enantiomers. Hence, the molecules cannot be distinguished by multinuclear NMR spectroscopy or by mass spectrometry as they would correspond to identical chemical shifts in NMR spectroscopy and would give similar isotopic distribution pattern in mass spectrometry;[18] all the spectroscopic data for 3 validate this fact.
Figure 3

Molecular structure and labelling diagrams of 3(a and b). Thermal ellipsoids are drawn at 40% probability level. Selected bond lengths [Å] and angles (°): Co1–S1 2.257(6), Co1–S2 2.230(2), Co2–S2 2.253(7), Co2–S7 2.222(17), B1–S4 1.797(16), B1–S5 1.967(12), B2–S6 1.856(14), B2–S7 1.909(12), S4–B1–S3 111.2(6), S4–B1–S5 104.8(7), S6–B2–S7 101.7(6), S7–B2–S3 109.7(6).

Molecular structure and labelling diagrams of 3(a and b). Thermal ellipsoids are drawn at 40% probability level. Selected bond lengths [Å] and angles (°): Co1–S1 2.257(6), Co1–S2 2.230(2), Co2–S2 2.253(7), Co2–S7 2.222(17), B1–S4 1.797(16), B1–S5 1.967(12), B2–S6 1.856(14), B2–S7 1.909(12), S4–B1–S3 111.2(6), S4–B1–S5 104.8(7), S6–B2–S7 101.7(6), S7–B2–S3 109.7(6). The molecular structure of the mirror equivalent isomers of 3 is comparable to that of 1 and other cubane cores[8,11b] with three μ2-S ligands bridging two elongated B–S edges and one Co–S edge of the [Co2S4B2] core. The tetrahedral environment of two B atoms defined by two μ3-S, one μ-S, and one H atom each, is also reflected in the S–B–S bond angles which closely match with 109.5° (maximum deviation 7.8° in case of S6–B2–S7). The presence of the μ-S bridge, viz. the Co1–S1–S7 link, distorts the planarity of the Co–S–Co–S square face (maximum deviation 24.5°). Even though the average B–S bond length in 3 is slightly longer (1.906 Å) as compared to other metallathiaborane clusters,[16] the B1–S4 bond length is fairly shorter (1.797 Å). The average Co–S bond length of 2.246 Å is shorter relative to some of the reported metallathiaborane clusters.[14] As discussed earlier, compound 2 was isolated along with 1 as an inseparable mixture. One of the molecular ion peaks in the combined mass spectrum of 1 and 2, which appeared at m/z 635.9366, is identical with that of 3. Thus, based on the mass spectrometric data together with the combined spectroscopic data, the composition of 2 may be considered as C20H32B2S7Co2. Therefore, we assume that compound 2 may be another isomer of dimetalla trishomocubane species. Although we were able to get the X-ray quality crystals for 1, unfortunately we failed to get the crystals for 2. However, the solution of 3 in CH2Cl2 on keeping at room temperature for several days converted to 2. The spectroscopic and mass spectrometric data enabled us to conclude that 2 and 3 are interconverting isomers (Scheme ).
Scheme 2

Conversion of 3 to 2 at Room Temperature

Fortunately, compounds 2 and 3 can be separated using toluene as an eluent. This enabled us to get the spectroscopic data of pure 2 and helped us assign all the combined spectroscopic data for 1 and 2. Two resonances are observed at δ = 5.2 and 3.6 ppm in the 11B{1H} NMR of 2. Hence, the signals at δ = −4.6 and −13.9 ppm in the combined 11B{1H} NMR may be assigned for 1. Similarly, the 1H NMR spectrum of 2 shows two resonances corresponding to Cp* protons at δ = 1.32 and 1.18 ppm therefore, 1H chemical shift at δ = 1.20 ppm in the combined 1H NMR spectrum has been assigned to Cp* protons of 1. Further, the 1H chemical shift values of 2 also suggest the presence of two different metal environments. Unfortunately, in spite of several attempts, we were unable to grow crystals of 2 for the X-ray diffraction analysis. However, from the spectroscopic data in combination with the mass spectrometric data of 2, it is rational to assume that compounds 2 and 3 are geometrical isomers. The structure of 2 which is shown in Schemes and 2 and Figure , is one of the possible isomers only.
Figure 4

Probable molecular structure of 2 obtained from density functional theory (DFT) optimization.

Probable molecular structure of 2 obtained from density functional theory (DFT) optimization.

Monometallic Trishomocubane Analogues, 4–6

The reactions of [Cp*CoCl]2 and [BH2E3]Li (E = S or Se) also yielded compounds 4 and 5 as orange solids. Multinuclear NMR and IR spectroscopy were used to characterize both the compounds. The mass spectrometric data for 5 shows a molecular ion peak at m/z 783.6853 suggesting the composition of 5 as C10H19B3Se7Co. The 11B{1H} NMR spectra of 4 and 5 are very similar showing a single resonance at δ = 6.3 and 0.2 ppm, respectively, suggesting symmetry in the molecules. Their 1H NMR spectra displayed the signals for a single Cp* at δ = 1.51 and 1.57 ppm, respectively. In addition, the 1H NMR spectra of 4 and 5 showed chemical shifts in the region of δ = 3.69–5.05 ppm for the terminal B–H protons. The 13C{1H} NMR spectra also indicate the occurrence of one Cp* in agreement with the molecules being symmetrical. The IR spectra of 4 and 5 showed peaks at 2473 and 2462 cm–1 due to stretching frequency of the terminal B–H bond. Therefore, based on all the spectroscopic data of compounds 4 and 5, we assume that both of them have similar geometry. The framework geometry of one of the analogous compounds (4) was established by single crystal X-ray diffraction analysis. As shown in Figure a, the structure of 4 can be regarded as a trishomocubane core, in which {CoS4B3} defines the cubane core with three μ2-S ligands bridging three elongated B–S edges of the CoS4B3 framework. The core geometry of 4 is closely related to that of 3; the Cp*Co fragment in 3 is substituted by a BH unit in 4. The X-ray crystallographic data establish that 3 and 4 are probably the first metalla-chalcogenaborane analogues of pentacyclo[6.3.0.02,6.03,10.05,9]undecane known as D3-trishomocubane[19] The D3-trishomocubane is the smallest stable rigid organic molecule belonging to the chiral point group D3.[19b−19d] All the boron atoms are in a symmetrical tetrahedral environment provided by three S and one H atom. The average bond length of 1.899 Å is somewhat higher as compared to that of other metallathiaborane clusters.[14]
Figure 5

Molecular structures and labelling diagrams of 4 (a) and 6 (b). Thermal ellipsoids are drawn at a 40% probability level. In 4, B1i and B1ii atoms are symmetry generated (i = −y + 1, x – y, z; ii = −x + y + 1, −x + y + 1, −x + 1, z). Selected bond lengths [Å] and angles (°); 4: Co1–S1 2.246(3), B1–S1 1.979(10), B1–S2 1.968(10), B1–S3 1.750(13), S2–B1–S1 102.8(4), S1–Co1–S1 92.83(12); 6: Co1–Co2 2.942(13), Co1–Co3 2.65(13), Co1–Se2 2.316(12), Co2–Se2 2.245(12), Co3–Se2 2.258(11), Co1–Se3 2.412(11), B1–Se9 2.013(11), B2–Se5 2.071(10), B3–Se5 2.076(10), B3–Se7 2.026(9), Se3–B1–Se9 106.8(5).

Molecular structures and labelling diagrams of 4 (a) and 6 (b). Thermal ellipsoids are drawn at a 40% probability level. In 4, B1i and B1ii atoms are symmetry generated (i = −y + 1, x – y, z; ii = −x + y + 1, −x + y + 1, −x + 1, z). Selected bond lengths [Å] and angles (°); 4: Co1–S1 2.246(3), B1–S1 1.979(10), B1–S2 1.968(10), B1–S3 1.750(13), S2–B1–S1 102.8(4), S1–Co1–S1 92.83(12); 6: Co1–Co2 2.942(13), Co1–Co3 2.65(13), Co1–Se2 2.316(12), Co2Se2 2.245(12), Co3–Se2 2.258(11), Co1–Se3 2.412(11), B1–Se9 2.013(11), B2–Se5 2.071(10), B3–Se5 2.076(10), B3–Se7 2.026(9), Se3–B1–Se9 106.8(5). The reaction between [Cp*CoCl]2 and [BH2Se3]Li, in addition to yielding 5, also yielded a brown compound 6 (Scheme ). The constituents of 6 were confirmed by means of multinuclear NMR spectroscopy, mass spectrometry, and single crystal X-ray diffraction analysis. The mass spectrum of 6 shows a molecular ion peak at m/z 1194.3456 which suggests a molecular formula C20H34B3Se9Co3.The 11B{1H} NMR spectrum, at room temperature, exhibits a single resonance at δ = −44.6 ppm suggesting a symmetry in the molecule. This was further supported by the presence of a single resonance in the 1H NMR spectrum corresponding to Cp* protons. Consistent with the 11B{1H} and 1H NMR spectra, the 13C{1H} NMR spectrum also supports the presence of symmetry. Moreover, the 1H NMR spectrum shows an upfield peak at δ = −3.60 ppm. The IR spectrum features a band at 2437 cm–1 because of B–H stretching frequencies. Although the spectroscopic data of 6 resemble that of 5 to some extent, the mass spectrometric data implies otherwise. The core structure could be comprehended only after an X-ray structure analysis was carried out with a brown rod-shaped crystal of 6. The X-ray structure of 6, shown in Figure b, can be considered as a vertex-fused cluster in which a trishomocubane moiety [Co(μ-Se)3(μ3-Se)4B3H3] and a trigonal bipyramid (tbp) cluster [{(Cp*Co)2(μ-H) (μ3-Se)2}Co] are fused by a cobalt atom (Co1). The core geometry of 6 is similar to 4 or 5, in which the Cp*Co fragment is replaced by the [{(Cp*Co)2(μ-H) (μ3-Se)2}Co] moiety. The boron atoms in 6 are in a symmetrical tetrahedral environment similar to that in 4 and 5. The Se–B–Se bond angles deviate slightly from 109.5° (maximum deviation ∼6.8°), whereas the basal plane deviates distinctly from planarity (maximum deviation 11.9°). The average B–Se bond length in 6 (2.043 Å) is notably longer as compared to that in [(Cp*Mo)2B4Se2H4] (1.923 Å).[20] All the spectroscopic data of 6 agreeably corroborate with its X-ray structure. The 1H chemical shift at δ = −3.60 ppm is designated to the Co–H–Co proton. Typically, the 1H chemical shift for the Co–H–Co proton appears in the up-field region;[21] however, the HSQC experiment does not support the existence of any Co–H–B or B–H–B protons. In addition, on lowering the temperature, the 1H chemical shift at δ = −3.60 ppm is shifted to the up-field region. Further, the computed 1H chemical shift for the corresponding Co–H–Co proton closely matches with the experimental value (Table S4). The electron counting rules[22] by Wade, Mingos, Jemmis, in addition to connecting borane, metallaborane, metallaheteroborane, or metallacarborane clusters in a simple manner, also provided a perception for the assessment of the electronic requirements of varied cage and ring structures. Thus, the cluster valence electron (cve) counts of the trishomocubane analogues 2–6 were carried out, which were found to be in good agreement with the hydrocarbon homologue C11H14. For illustration, the cve for C11H14: 8 (CH) × 5 + 3 (CH2) × 6 = 58; for 2 and 3: 2(Cp*Co) × 14 + 7 (S) × 6 + 2 (BH) × 4 = 78; for 4 and 5: 1(Cp*Co) × 14 + 7 (S/Se) × 6 + 3 (BH) × 4 = 68. For 6, the total valence electron count around Co1 can be calculated as 14 [9 (from Co1) + 1 (from Co1–Co2) + 1 (from Co1–Co3) + 3 [2 (from Se1/Se2–Co3) + 1 (from Se1/Se2–Co3)], which is equivalent to that of Cp*Co [9 (from Co) + 5 (from Cp*)]. Therefore, based on the electron contribution to Co1, the exo-{(Cp*Co)2(μ-H)(μ3-Se)2} fragment can be compared with the Cp* ligand which makes 6 an electron precise trishomocubane analogue. In addition to the formation of compounds 5 and 6, the reaction of [Cp*CoCl]2 and [BH2Se3]Li at room temperature also allowed us to isolate compound 7 as a grey solid. The mass spectrum featured a molecular ion peak at m/z 807.7211. The 11B{1H} NMR spectrum for 7 features two sharp signals with equal intensities at δ = −5.6 and −12.9 ppm. Although the 1H NMR spectrum displayed a peak at δ = 1.58 ppm because of Cp* protons, the 13C{1H} NMR spectrum indicates that two different metal environments are present in the compound. The occurrence of a single chemical shift in the 1H NMR at δ = 1.58 ppm for two equivalents of Cp* may be owed to the accidental overlapping of two peaks. The IR spectrum showed a broad band in the 2453 cm–1 region for the terminal B–H units. The 1H{11B} NMR experiment additionally confirmed the existence of the terminal B–H units. An X-ray diffraction study was done for ascertaining the molecular structure of 7. Compound 7 shows a single μ2-Se ligand bridging the B1–Se4 edge of the cube (Figure ). The average B–Se bond length in 7 (2.111 Å) is longer as compared to that of [(Cp*Mo)2B4Se2H4][20] (1.923 Å) and [(Cp*Ru)2(μ3-Se)(μ4-Se)B2H5][11b] (2.014 Å).
Figure 6

Molecular structures and labelling diagram of 7. Thermal ellipsoids are drawn at a 50% probability level. Selected bond lengths [Å] and angles (°): Co1–Se1 2.3882(16), Co1–Se2 2.3947(18), Co1–Se3 2.3910(18), Co2–Se1 2.3909(19), Co2–Se3 2.3863(18), Co2–Se4 2.3437(19), B1–Se2 2.087(13), B1–Se3 2.075(13), B1–Se5 2.035(12); Se1–Co1–Se3 84.78(6), Se3–Co2–Se1 84.82(6), Se5–B1–Se3 112.6(6), Se5–B1–Se2 108.8(6), Se3–B1–Se2 99.9(5), Se5–B1–H1 111.6, Se4–B2–Se2 105.1(6), Se4–B2–Se1 93.1(5), Se2–B2–Se1 96.7(5), Se2–B2–H2 119.0.

Molecular structures and labelling diagram of 7. Thermal ellipsoids are drawn at a 50% probability level. Selected bond lengths [Å] and angles (°): Co1–Se1 2.3882(16), Co1–Se2 2.3947(18), Co1–Se3 2.3910(18), Co2–Se1 2.3909(19), Co2–Se3 2.3863(18), Co2–Se4 2.3437(19), B1–Se2 2.087(13), B1–Se3 2.075(13), B1–Se5 2.035(12); Se1–Co1–Se3 84.78(6), Se3–Co2–Se1 84.82(6), Se5–B1–Se3 112.6(6), Se5–B1–Se2 108.8(6), Se3–B1–Se2 99.9(5), Se5–B1–H1 111.6, Se4–B2–Se2 105.1(6), Se4–B2–Se1 93.1(5), Se2–B2–Se1 96.7(5), Se2–B2–H2 119.0. Compound 7 possesses the expected cve count of 66 [2 (Cp*Co) × 14 + 5 (Se) × 6 + 2 (BH) × 4], thereby agreeing with the electron precise hydrocarbon homologue C9H10 [cve count 46; 8 (CH) × 5 + 1 (CH2) × 6] and obeying the electron counting rule.

Electronic Structure Calculations

The DFT calculations were done to understand the electronic structures of the homocubane derivatives 1–7 in a gas phase, with GGA BP86 as a functional and def2-TZVP basis set included Grimme’s D3 dispersion corrections. The optimized geometrical parameters of 1–7 were found to almost agree with the crystallographic data obtained from X-ray structure analyses (Table S1). The computed and experimental values for 1H and 11B{1H} chemical shifts were given in Table S4. The molecular orbital analyses show a relatively higher highest occupied molecular orbital (HOMO)–lowest unoccupied molecular orbital (LUMO) energy gap for 4 (2.01 eV) compared to other homocubane analogues 1–3 and 5–7 (Table S2); the gap is minimum for 6 (Figure S33). The frontier molecular orbitals of all the molecules indicate that the HOMO is mostly localized at chalcogen E (S or Se) which suggests that the lone pairs of electrons are on E. On the other hand, the LUMO is located on Co which is antibonding interaction with E (E = S or Se) (Figures S33 and S34). The total percentage contribution of Co, chalcogen E (E = S or Se), and B to the HOMO and LUMO of all molecules are listed in Table S3. The HOMO of all molecules clearly suggests that their donation ability through the chalcogen E end, which may be useful to study the reactivity with small molecules such as silanes, boranes, and alkynes and so on. The natural charges obtained from natural bond orbital (NBO) analyses, shown in Table S2, reveal that all the cobalt and boron atoms show positive and negative charges, respectively (Table S3). The Wiberg bond index analyses suggest strong bonding interactions at Co–E, B–E, and E–E bonds (E = S or Se, Table S1). The NBO calculations further support these bonding interactions, notably Co–H–Co bonding interaction (Figure S35). In addition, the analysis of the topology displays bond critical points (BCPs) between Co–E and B–E bonds, which suggests relatively similar charge distribution for 1 at Co2E and E2B planes and for 5 and 6 at CoE2 and B2E planes (Figures , S36 and S37). The BCPs also signify higher electron density at B–E relative to that of Co–E bonds. Furthermore, electron localization function (ELF) values and negative energy density (H(r)) values indicate that the B–E bonds are more covalent in nature as compared to the Co–E bonds (Table S5).
Figure 7

Contour line plots of the Laplacian of the electron density along (a) Co2S and (b) S2B planes for compound 1 obtained from the Multiwfn program package. Solid lines indicate the area of charge concentration (∇2ρ(r) < 0) and dotted lines suggest the area of charge depletion (∇2ρ(r) > 0). Blue dots indicate BCPs.

Contour line plots of the Laplacian of the electron density along (a) Co2S and (b) S2B planes for compound 1 obtained from the Multiwfn program package. Solid lines indicate the area of charge concentration (∇2ρ(r) < 0) and dotted lines suggest the area of charge depletion (∇2ρ(r) > 0). Blue dots indicate BCPs.

Electronic Spectra

The cubane cores of the homocubane clusters 1–7, consist of either one or two metal centers. Therefore, UV–vis spectra were recorded, for compounds 1–7, in CH2Cl2 (Figure ), so as to see the absorption pattern. The absorption pattern for these complexes seem to be like that seen in the case of homometallic cubane clusters [(Cp*Mo)4(μ4-BH)3B4H4][8b] and [(CpNi)4B4H4].[23] The pattern also resembles that observed for the homometallic ruthenium cubanes, (i–iv) generated from nido-[(Cp*RuH)2B3H7].[8c] All the compounds displayed a strong absorbance in the region 311–326 nm, which may be designated to π–π* transitions of the cyclopentadienyl ligands (Table ). On the other hand, the bands in the region 375–563 nm may be because of charge transfer transition (MLCT). All the absorption bands manifest a red shift on moving from [(CpNi)4B4H4] to 1–7 (ca. 30 nm) (Table ). In spite of the presence of Cp*, the π–π* transition bands in compounds 1–7 show a red shift unlike in compounds i–iv, where it shows a blue shift.
Figure 8

Absorption spectra of 1–7 in CH2Cl2 (10–3 M).

Table 1

Absorption Spectra of 1–7 and Homometallic Cubane Clustersa

compoundλmax, nmrefs
[(CpNi)4B4H4]543, 423, 335, 284(23)
[(CpNi)4B5H5]548, 365, 302, 257(23)
[(Cp*Mo)44-BH)3B4H4]440, 364, 315, 239(8b)
i513, 368, 248, 206(8c)
ii499, 370, 253, 209(8c)
iii429, 318, 204(8c)
iv481, 372,  258, 209(8c)
(1 + 2)490, 376, 306this work
2492, 372, 314this work
3491, 371, 313this work
4492, 436, 396, 375, 311this work
5494, 435, 311this work
6526, 358, 311this work
7563, 410, 318this work

i, ii. [(Cp*Ru)2{Ru(CO)2}BH(μ-H)B(μ-H)3M(μ3-E)]; i, E = CO, M = Cp*Ru; ii, E = BH, M = Ru{(Cp*Ru)2(μ-H)BH(μ-CO)3}]; iii. [(Cp*Ru)3(BH)3(μ3-H)3(μ3-CO)]; iv. [(Cp*Ru)2(μ3-CO){Ru(CO)3}2(μ-H)B(BH)2].

Absorption spectra of 1–7 in CH2Cl2 (10–3 M). i, ii. [(Cp*Ru)2{Ru(CO)2}BH(μ-H)B(μ-H)3M(μ3-E)]; i, E = CO, M = Cp*Ru; ii, E = BH, M = Ru{(Cp*Ru)2(μ-H)BH(μ-CO)3}]; iii. [(Cp*Ru)3(BH)3(μ3-H)3(μ3-CO)]; iv. [(Cp*Ru)2(μ3-CO){Ru(CO)3}2(μ-H)B(BH)2].

Conclusions

In summary, we have isolated and structurally characterized a series of unusual mono and dicobalta higher-order homocubane analogues, viz. tris and tetrahomocubane. All the structures possess essentially a cubane core, differing only in number and position of the μ2-E (E = S or Se) bridges thereby generating a classified collection of derivatized homocubane analogues. The vertex-fused trishomocubane derivative, in which the [Co(μ-Se)3(μ3-Se)4B3H3] moiety is fused with an exopolyhedral trigonal bipyramid moiety, is quite exceptional. Synthesis of higher order homocubane or their derivatives is still a challenge and we believe that the approach we have utilized in this work might give an access to higher order homocubane analogues.

Experimental Section

General Procedures and Instrumentation

The operations were carried out under an Ar atmosphere by means of standard Schlenk line methods and glovebox. Solvents were distilled before use under an Ar atmosphere. [LiBH4·THF], S, and Se powders were used as purchased from Sigma Aldrich. [Cp*CoCl]2[24] and [BH2E3]Li[12] have been synthesized as per the literature methods. The reaction mixtures were separated by TLC which was done on silica gel TLC plates by Merck supported with 250 μm diameter aluminum. 500 MHz Bruker FT-NMR spectrometer, Agilent Technologies: 6545-Q-TOF LC/MS, JASCO FT/IR-4100 spectrometer, and Evolution 300 UV–vis spectrophotometer were used to record NMR, ESI mass, IR, and absorption spectra, respectively. Signals for residual protons in the deuterated solvents were used as reference in 1H NMR (CDCl3, δ = 7.26 ppm, C6D6, δ = 7.16, toluene-d8, δ = 7.09). For the 11B{1H} NMR analysis, a sealed tube containing [Bu4N(B3H8)][25] in C6D6 (δB = −30.07 ppm) was used as an external reference. Absorption spectra were recorded at 298 K.

Synthesis of Compounds 1–3 and 4

[Cp*CoCl]2 (0.1 g, 0.218 mmol) was suspended in 10 mL toluene at room temperature, in a Schlenk tube which was flame-dried. To that, [BH2S3]Li (2.18 mmol), was added as freshly prepared solution in toluene. The reaction then was allowed to stir for 16 h at room temperature. Drying of the solvent was done under vacuum followed by extraction of the residue in n-hexane/DCM (50:50 v/v) by passing through Celite. The solvent was then removed and the resulting residue was then put through chromatographic work-up by means of TLC plates. Elution with n-hexane/CH2Cl2 (50:50 v/v) yielded inseparable brown 1, 2, and 3 (0.042 g; R = 0.5) and orange 4 (0.030 g, 15%; R = 0.66). Further elution with toluene separated inseparable brown 1 and 2 (0.020 g; 14%; R = 0.66) (from the 1H NMR we understood that the product ratio of 1 and 2 is 3:2, respectively) and brown 3 (0.020 g, 14%; R = 0.5). 1: MS (ESI+) m/z: calculated for C20H32B2S8Co2 [M]+, 667.9119; found, 667.9108. 1H NMR (500 MHz, C6D6, 22 °C): δ = 4.80 (s, 1H, B-Ht), 4.22 (s, 1H, B-Ht), 1.20 ppm (s, 30H, Cp*); 11B{1H} NMR (160 MHz, C6D6, 22 °C): δ = −4.6, −13.9 ppm; 13C{1H} NMR (125 MHz, C6D6, 22 °C): δ = 95.3 (C5Me5), 8.6 ppm (C5Me5); IR (dichloromethane, cm–1): 2436 (B-Ht). 2: MS (ESI+) m/z: calculated for C20H33B2S7Co2 [M + H]+, 636.9477; found, 636.9450. 1H NMR (500 MHz, C6D6, 22 °C): δ = 5.26 (s, 1H, B-Ht), 4.23 (s, 1H, B-Ht), 1.32 (s, 15H, Cp*), 1.18 ppm (s, 15H, Cp*); 11B{1H} NMR (160 MHz, C6D6, 22 °C): δ = 5.2, 3.6 ppm; 13C{1H} NMR (125 MHz, C6D6, 22 °C): δ = 96.0, 94.6 (C5Me5), 8.9, 8.4 ppm (C5Me5); IR (dichloromethane, cm–1): 2519, 2363 (B-Ht). 3: MS (ESI+) m/z: calculated for C20H32B2S7Co2 [M]+, 635.9399; found, 635.9366. 1H NMR (500 MHz, C6D6, 22 °C): δ = 4.47 (s, 1H, B-Ht), 4.22 (s, 1H, B-Ht), 1.36 (s, 15H, Cp*), 1.19 ppm (s, 15H, Cp*); 11B{1H} NMR (160 MHz, C6D6, 22 °C): δ = 7.1, 5.2 ppm; 13C{1H} NMR (125 MHz, C6D6, 22 °C): δ = 95.5, 93.5 (C5Me5), 9.5, 9.0 ppm (C5Me5); IR (dichloromethane, cm–1): 2436, 2373 (B-Ht). 4: 1H NMR (500 MHz, CDCl3, 22 °C): δ = 3.69 (s, 3H, B-Ht), 1.51 ppm (s, 15H, Cp*); 11B{1H} NMR (160 MHz, CDCl3, 22 °C): δ = 6.3 ppm; 13C{1H} NMR (125 MHz, CDCl3, 22 °C): δ = 95.5 (C5Me5), 10.2 ppm (C5Me5); IR (dichloromethane, cm–1): 2473 (B-Ht).

Synthesis of Compounds 5, 6 and 7

The compounds 5, 6, and 7 were synthesized from the reaction of [Cp*CoCl]2 (0.1 g, 0.2018 mmol) and [BH2Se3]Li (2.18 mmol) by employing the same reaction conditions as for compounds 1–4. Orange 5 (0.022 g, 6%; R = 0.64), brown 6 (0.012 g, 27%; R = 0.46), and grey 7 (0.030 g, 17%; R = 0.56) were afforded on elution with n-hexane/CH2Cl2 (60:40 v/v) in thin layer chromatographic work-up. 5: MS (ESI+) m/z: calculated for C10H19B3Se7Co [M + H]+, 783.3397; found, 783.6853. 1H NMR (500 MHz, CDCl3, 22 °C): δ = 5.05 (s, 3H, B-Ht), 1.57 ppm (s, 15H, Cp*); 11B{1H} NMR (160 MHz, CDCl3, 22 °C): δ = 0.2 ppm; 13C{1H} NMR (125 MHz, CDCl3, 22 °C): δ = 114.9 (C5Me5), 14.5 ppm (C5Me5); IR (dichloromethane, cm–1): 2462 (B-Ht). 6: MS (ESI+) m/z: calculated for C20H34B3Se9Co3 [M]+, 1194.3519; found, 1194.3456. 1H NMR (500 MHz, toluene-d8, 22 °C): δ = 1.33 (s, 30H, Cp*), −3.60 ppm (s, 1H; Co–H–Co); 11B{1H} NMR (160 MHz, toluene-d8, 22 °C): δ = −44.6 ppm; 13C{1H} NMR (125 MHz, toluene-d8, 22 °C): δ = 112.4 (C5Me5), 14.7 ppm (C5Me5); IR (dichloromethane, cm–1): 2437 (B-Ht). 7: MS (ESI+) m/z: calculated for C20H33B2Co2Se5 [M + H]+: 807.7223, found 807.7211. 1H NMR (500 MHz, CDCl3, 22 °C): δ = 4.42 (s, 1H, B-Ht), 1.64 (s, 1H, B-Ht), 1.58 ppm (s, 30H, Cp*); 11B{1H} NMR (160 MHz, CDCl3, 22 °C): δ = −5.6, −12.9 ppm; 13C{1H} NMR (125 MHz, CDCl3, 22 °C): δ = 90.7, 88.2 ppm (C5Me5), 10.1, 10.0 ppm (C5Me5); IR (dichloromethane, cm–1): 2453, 2368 (B-Ht).
  17 in total

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