Literature DB >> 31612715

TeachOpenCADD-KNIME: A Teaching Platform for Computer-Aided Drug Design Using KNIME Workflows.

Dominique Sydow1, Michele Wichmann1, Jaime Rodríguez-Guerra1, Daria Goldmann2, Gregory Landrum3, Andrea Volkamer1.   

Abstract

Open-source workflows have become more and more an integral part of computer-aided drug design (CADD) projects since they allow reproducible and shareable research that can be easily transferred to other projects. Setting up, understanding, and applying such workflows involves either coding or using workflow managers that offer a graphical user interface. We previously reported the TeachOpenCADD teaching platform that provides interactive Jupyter Notebooks (talktorials) on central CADD topics using open-source data and Python packages. Here we present the conversion of these talktorials to KNIME workflows that allow users to explore our teaching material without any line of code. TeachOpenCADD KNIME workflows are freely available on the KNIME Hub: https://hub.knime.com/volkamerlab/space/TeachOpenCADD .

Year:  2019        PMID: 31612715     DOI: 10.1021/acs.jcim.9b00662

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  3 in total

1.  Processing binding data using an open-source workflow.

Authors:  Errol L G Samuel; Secondra L Holmes; Damian W Young
Journal:  J Cheminform       Date:  2021-12-11       Impact factor: 5.514

2.  Identification of Novel Antagonists Targeting Cannabinoid Receptor 2 Using a Multi-Step Virtual Screening Strategy.

Authors:  Mukuo Wang; Shujing Hou; Ye Liu; Dongmei Li; Jianping Lin
Journal:  Molecules       Date:  2021-11-04       Impact factor: 4.411

3.  KLIFS: an overhaul after the first 5 years of supporting kinase research.

Authors:  Georgi K Kanev; Chris de Graaf; Bart A Westerman; Iwan J P de Esch; Albert J Kooistra
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

  3 in total

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