Literature DB >> 31603768

A Multiscale Agent-Based Model of Ductal Carcinoma In Situ.

Joseph D Butner, David Fuentes, Bulent Ozpolat, George A Calin, Xiaobo Zhou, John Lowengrub, Vittorio Cristini, Zhihui Wang.   

Abstract

OBJECTIVE: we present a multiscale agent-based model of Ductal Carcinoma in Situ (DCIS) in order to gain a detailed understanding of the cell-scale population dynamics, phenotypic distributions, and the associated interplay of important molecular signaling pathways that are involved in DCIS ductal invasion into the duct cavity (a process we refer to as duct advance rate here).
METHODS: DCIS is modeled mathematically through a hybridized discrete cell-scale model and a continuum molecular scale model, which are explicitly linked through a bidirectional feedback mechanism.
RESULTS: we find that duct advance rates occur in two distinct phases, characterized by an early exponential population expansion, followed by a long-term steady linear phase of population expansion, a result that is consistent with other modeling work. We further found that the rates were influenced most strongly by endocrine and paracrine signaling intensity, as well as by the effects of cell density induced quiescence within the DCIS population.
CONCLUSION: our model analysis identified a complex interplay between phenotypic diversity that may provide a tumor adaptation mechanism to overcome proliferation limiting conditions, allowing for dynamic shifts in phenotypic populations in response to variation in molecular signaling intensity. Further, sensitivity analysis determined DCIS axial advance rates and calcification rates were most sensitive to cell cycle time variation. SIGNIFICANCE: this model may serve as a useful tool to study the cell-scale dynamics involved in DCIS initiation and intraductal invasion, and may provide insights into promising areas of future experimental research.

Entities:  

Mesh:

Year:  2019        PMID: 31603768     DOI: 10.1109/TBME.2019.2938485

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  8 in total

1.  Dedifferentiation-mediated stem cell niche maintenance in early-stage ductal carcinoma in situ progression: insights from a multiscale modeling study.

Authors:  Joseph D Butner; Prashant Dogra; Caroline Chung; Javier Ruiz-Ramírez; Sara Nizzero; Marija Plodinec; Xiaoxian Li; Ping-Ying Pan; Shu-Hsia Chen; Vittorio Cristini; Bulent Ozpolat; George A Calin; Zhihui Wang
Journal:  Cell Death Dis       Date:  2022-05-21       Impact factor: 9.685

2.  Gene expression signatures of individual ductal carcinoma in situ lesions identify processes and biomarkers associated with progression towards invasive ductal carcinoma.

Authors:  Clare A Rebbeck; Jian Xian; Susanne Bornelöv; Joseph Geradts; Amy Hobeika; Heather Geiger; Jose Franco Alvarez; Elena Rozhkova; Ashley Nicholls; Nicolas Robine; Herbert K Lyerly; Gregory J Hannon
Journal:  Nat Commun       Date:  2022-06-13       Impact factor: 17.694

Review 3.  Mechanical Pressure Driving Proteoglycan Expression in Mammographic Density: a Self-perpetuating Cycle?

Authors:  Gina Reye; Xuan Huang; Larisa M Haupt; Ryan J Murphy; Jason J Northey; Erik W Thompson; Konstantin I Momot; Honor J Hugo
Journal:  J Mammary Gland Biol Neoplasia       Date:  2021-08-27       Impact factor: 2.673

4.  Investigating key cell types and molecules dynamics in PyMT mice model of breast cancer through a mathematical model.

Authors:  Navid Mohammad Mirzaei; Navid Changizi; Alireza Asadpoure; Sumeyye Su; Dilruba Sofia; Zuzana Tatarova; Ioannis K Zervantonakis; Young Hwan Chang; Leili Shahriyari
Journal:  PLoS Comput Biol       Date:  2022-03-16       Impact factor: 4.475

5.  Translational Modeling Identifies Synergy between Nanoparticle-Delivered miRNA-22 and Standard-of-Care Drugs in Triple-Negative Breast Cancer.

Authors:  Prashant Dogra; Javier Ruiz Ramírez; Joseph D Butner; Maria J Peláez; Caroline Chung; Anupama Hooda-Nehra; Renata Pasqualini; Wadih Arap; Vittorio Cristini; George A Calin; Bulent Ozpolat; Zhihui Wang
Journal:  Pharm Res       Date:  2022-03-16       Impact factor: 4.200

Review 6.  A Review on Applications of Computational Methods in Drug Screening and Design.

Authors:  Xiaoqian Lin; Xiu Li; Xubo Lin
Journal:  Molecules       Date:  2020-03-18       Impact factor: 4.411

7.  Innate Immunity Plays a Key Role in Controlling Viral Load in COVID-19: Mechanistic Insights from a Whole-Body Infection Dynamics Model.

Authors:  Prashant Dogra; Javier Ruiz-Ramírez; Kavya Sinha; Joseph D Butner; Maria J Peláez; Manmeet Rawat; Venkata K Yellepeddi; Renata Pasqualini; Wadih Arap; H Dirk Sostman; Vittorio Cristini; Zhihui Wang
Journal:  ACS Pharmacol Transl Sci       Date:  2020-12-30

8.  A mathematical model for the quantification of a patient's sensitivity to checkpoint inhibitors and long-term tumour burden.

Authors:  Joseph D Butner; Zhihui Wang; Dalia Elganainy; Karine A Al Feghali; Marija Plodinec; George A Calin; Prashant Dogra; Sara Nizzero; Javier Ruiz-Ramírez; Geoffrey V Martin; Hussein A Tawbi; Caroline Chung; Eugene J Koay; James W Welsh; David S Hong; Vittorio Cristini
Journal:  Nat Biomed Eng       Date:  2021-01-04       Impact factor: 29.234

  8 in total

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