| Literature DB >> 31598132 |
Georgina Donati1, Iroise Dumontheil1, Emma L Meaburn1.
Abstract
Individual differences in executive functions (EF) are heritable and predictive of academic attainment (AA). However, little is known about genetic contributions to EFs or their genetic relationship with AA and intelligence. We conducted genome-wide association analyses for processing speed (PS) and the latent EF measures of working memory (WM) and inhibitory control (IC) in 4,611 adolescents from the Avon Longitudinal Study of Parents and Children. While no loci reached genome-wide significance, common genetic variants explained 30% of the variance in WM and 19% in PS. In contrast, we failed to find common genetic contributions to IC. Finally, we examined shared genetic effects between EFs and general intelligence, AA and ADHD. We identified significant genetic correlations between WM, intelligence, and AA. A more specific pattern was observed for PS, with modest genetic overlap with intelligence. Together these findings highlight diversity in the genetic contributions to specific cognitive functions and their genetic relationship with educational and psychiatric outcomes.Entities:
Year: 2019 PMID: 31598132 PMCID: PMC6771723 DOI: 10.1111/mbe.12198
Source DB: PubMed Journal: Mind Brain Educ ISSN: 1751-2271
Estimates of SNP Heritability and Phenotypic and Genetic Correlations Between the Three Cognitive Measures
| Phenotypic correlations (R) | ||||
|---|---|---|---|---|
|
| WM | IC | PS | |
| Genetic correlations | WM |
| −.03 | .13 |
| IC | NA |
| .21 | |
| PS | .24 (0.32) | NA |
| |
Note. SNP heritability estimates (h2 SNP) is shown along the diagonal in bold. Phenotypic correlations (R) are shown above the diagonal, and genetic correlations (r G) below the diagonal. IC, inhibitory control; PS, processing speed; SE, standard error; SNP, single nucleotide polymorphism; WM, working memory; NA, genotypic correlations were not calculated for inhibitory control as no SNP heritability was observed for this measure.
p < .001.
Figure 1Manhattan plots for GWASes of working memory, inhibitory control, and processing speed. The red dotted line represents genome‐wide significance (p < 5 × 10−8) and the blue dotted line represents genome‐wide suggestive significance (p < 10−6).
Figure 2Quantile‐quantile plots (Q‐Q plots) for working memory, inhibitory control, and processing speed GWASes. Q‐Q plots show the distribution of p‐values against the expected p values. (a) Working memory, (b) Processing speed, (c) Inhibitory control.
Genetic Correlations (r G) With Educationally Relevant Measures Estimated Using GWAS Summary Statistics and LDSC Regression in LD Hub
| Working memory | Processing speed | |||
|---|---|---|---|---|
|
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|
|
| |
| Lifespan intelligence |
|
|
|
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| Childhood intelligence |
|
| 0.45 (0.36) | 0.211 |
| Years of schooling 2016 |
|
| 0.16 (0.16) | 0.293 |
| College completion |
|
| 0.19 (0.22) | 0.385 |
| Attention deficit hyperactivity disorder |
|
|
|
|
Note. SNP, single nucleotide polymorphism. Bolded figures represent a significant (p ≤ .05) correlation. However, Bonferroni correction for multiple testing requires p < .001. The genetic correlations can exceed 1 as LD score regression is not a bounded estimator and so can produce correlations larger than 1 or smaller than −1.
Significant Gene‐Based Associations
| Phenotype | Chromosome | Gene | Gene name |
|
|
|---|---|---|---|---|---|
| Working memory | 11q14.1 | ENSG00000182103 | FAM181B | 1.99 x 10−6 | 4.6124 |
| Processing speed | 11p15.5 | ENSG00000130598 | TNNI2 | 2.74 x 10−6 | 4.5453 |
Note. Genome‐wide threshold for gene analysis = p (.05) /number of genes (18,192) = 2.75 × 10−6.