Bilal Wajid1,2,3, Hasan Iqbal3, Momina Jamil3, Hafsa Rafique3, Faria Anwar4. 1. Department of Information Systems, University of Management and Technology, Lahore 54000, Punjab, Pakistan. 2. Department of Electrical-Electronics Engineering, Istanbul Commerce University, Istanbul 34110, Turkey. 3. Department of Research, Sabz-Qalam, Lahore 54000, Punjab, Pakistan. 4. Mayo Hospital, Lahore 54000, Punjab, Pakistan.
Abstract
MOTIVATION: Metabolomics is a data analysis and interpretation field aiming to study functions of small molecules within the organism. Consequently Metabolomics requires researchers in life sciences to be comfortable in downloading, installing and scripting of software that are mostly not user friendly and lack basic GUIs. As the researchers struggle with these skills, there is a dire need to develop software packages that can automatically install software pipelines truly speeding up the learning curve to build software workstations. Therefore, this paper aims to provide MetumpX, a software package that eases in the installation of 103 software by automatically resolving their individual dependencies and also allowing the users to choose which software works best for them. RESULTS: MetumpX is a Ubuntu-based software package that facilitate easy download and installation of 103 tools spread across the standard metabolomics pipeline. As far as the authors know MetumpX is the only solution of its kind where the focus lies on automating development of software workstations. AVAILABILITY AND IMPLEMENTATION: https://github.com/hasaniqbal777/MetumpX-bin. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
MOTIVATION: Metabolomics is a data analysis and interpretation field aiming to study functions of small molecules within the organism. Consequently Metabolomics requires researchers in life sciences to be comfortable in downloading, installing and scripting of software that are mostly not user friendly and lack basic GUIs. As the researchers struggle with these skills, there is a dire need to develop software packages that can automatically install software pipelines truly speeding up the learning curve to build software workstations. Therefore, this paper aims to provide MetumpX, a software package that eases in the installation of 103 software by automatically resolving their individual dependencies and also allowing the users to choose which software works best for them. RESULTS: MetumpX is a Ubuntu-based software package that facilitate easy download and installation of 103 tools spread across the standard metabolomics pipeline. As far as the authors know MetumpX is the only solution of its kind where the focus lies on automating development of software workstations. AVAILABILITY AND IMPLEMENTATION: https://github.com/hasaniqbal777/MetumpX-bin. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.