Literature DB >> 31591889

Characterization of Leptazolines A-D, Polar Oxazolines from the Cyanobacterium Leptolyngbya sp., Reveals a Glitch with the "Willoughby-Hoye" Scripts for Calculating NMR Chemical Shifts.

Jayanti Bhandari Neupane1, Ram P Neupane1, Yuheng Luo1, Wesley Y Yoshida1, Rui Sun1, Philip G Williams1.   

Abstract

The bioactivity-guided examination of a Leptolyngbya sp. led to the isolation of <span class="Chemical">leptazolines A-D (1-4), from the culture media, along with two degradation products (5 and 6). Density functional theory nuclear magnetic resonance calculations established the relative configurations of 1 and 2 and revealed that the calculated shifts depended on the operating system when using the "Willoughby-Hoye" Python scripts to streamline the processing of the output files, a previously unrecognized flaw that could lead to incorrect conclusions.

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Year:  2019        PMID: 31591889      PMCID: PMC6919963          DOI: 10.1021/acs.orglett.9b03216

Source DB:  PubMed          Journal:  Org Lett        ISSN: 1523-7052            Impact factor:   6.005


  16 in total

1.  Beyond DP4: an Improved Probability for the Stereochemical Assignment of Isomeric Compounds using Quantum Chemical Calculations of NMR Shifts.

Authors:  Nicolás Grimblat; María M Zanardi; Ariel M Sarotti
Journal:  J Org Chem       Date:  2015-12-10       Impact factor: 4.354

2.  Madurastatin B3, a rare aziridine derivative from actinomycete Nocardiopsis sp. LS150010 with potent anti-tuberculosis activity.

Authors:  Xinjun Zhang; Hongtao He; Rong Ma; Zengchun Ji; Qi Wei; Huanqin Dai; Lixin Zhang; Fuhang Song
Journal:  J Ind Microbiol Biotechnol       Date:  2017-02-08       Impact factor: 3.346

3.  Computationally Assisted Discovery and Assignment of a Highly Strained and PANC-1 Selective Alkaloid from Alaska's Deep Ocean.

Authors:  Yike Zou; Xiaojuan Wang; James Sims; Bin Wang; Pankaj Pandey; Colin L Welsh; Robert P Stone; Mitchell A Avery; Robert J Doerksen; Daneel Ferreira; Clemens Anklin; Frederick A Valeriote; Michelle Kelly; Mark T Hamann
Journal:  J Am Chem Soc       Date:  2019-03-05       Impact factor: 15.419

4.  Palmyrolide A, an unusually stabilized neuroactive macrolide from Palmyra Atoll cyanobacteria.

Authors:  Alban R Pereira; Zhengyu Cao; Niclas Engene; Irma E Soria-Mercado; Thomas F Murray; William H Gerwick
Journal:  Org Lett       Date:  2010-10-15       Impact factor: 6.005

5.  Lamellarin Sulfates from the Pacific Tunicate Didemnum ternerratum.

Authors:  Joe Bracegirdle; Luke P Robertson; Paul A Hume; Michael J Page; Abigail V Sharrock; David F Ackerley; Anthony R Carroll; Robert A Keyzers
Journal:  J Nat Prod       Date:  2019-07-15       Impact factor: 4.050

6.  Halogenated Tyrosine Derivatives from the Tropical Eastern Pacific Zoantharians Antipathozoanthus hickmani and Parazoanthus darwini.

Authors:  Paul O Guillen; Karla B Jaramillo; Laurence Jennings; Grégory Genta-Jouve; Mercedes de la Cruz; Bastien Cautain; Fernando Reyes; Jenny Rodríguez; Olivier P Thomas
Journal:  J Nat Prod       Date:  2019-04-24       Impact factor: 4.050

7.  Accessing Multiple Classes of 2 H-Indazoles: Mechanistic Implications for the Cadogan and Davis-Beirut Reactions.

Authors:  Jie S Zhu; Clarabella J Li; Ka Yi Tsui; Niklas Kraemer; Jung-Ho Son; Makhluf J Haddadin; Dean J Tantillo; Mark J Kurth
Journal:  J Am Chem Soc       Date:  2019-04-04       Impact factor: 15.419

8.  Coibamide A, a potent antiproliferative cyclic depsipeptide from the Panamanian marine cyanobacterium Leptolyngbya sp.

Authors:  Rebecca A Medina; Douglas E Goeger; Patrice Hills; Susan L Mooberry; Nelson Huang; Luz I Romero; Eduardo Ortega-Barría; William H Gerwick; Kerry L McPhail
Journal:  J Am Chem Soc       Date:  2008-04-29       Impact factor: 15.419

Review 9.  A look at the progress of treating pancreatic cancer over the past 20 years.

Authors:  Ruediger Goess; Helmut Friess
Journal:  Expert Rev Anticancer Ther       Date:  2018-01-16       Impact factor: 4.512

10.  Cytotoxic Sesquiterpenoid Quinones and Quinols, and an 11-Membered Heterocycle, Kauamide, from the Hawaiian Marine Sponge Dactylospongia elegans.

Authors:  Ram P Neupane; Stephen M Parrish; Jayanti Bhandari Neupane; Wesley Y Yoshida; M L Richard Yip; James Turkson; Mary Kay Harper; John D Head; Philip G Williams
Journal:  Mar Drugs       Date:  2019-07-19       Impact factor: 5.118

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  8 in total

1.  Metabolite Structure Assignment Using In Silico NMR Techniques.

Authors:  Susanta Das; Arthur S Edison; Kenneth M Merz
Journal:  Anal Chem       Date:  2020-07-15       Impact factor: 6.986

2.  Towards Knowledge Maintenance in Scientific Digital Libraries with the Keystone Framework.

Authors:  Yuanxi Fu; Jodi Schneider
Journal:  Proc ACM/IEEE Joint Conf Digit Libr       Date:  2020-08-01

3.  Addendum: A guide to small-molecule structure assignment through computation of (¹H and ¹³C) NMR chemical shifts.

Authors:  Patrick H Willoughby; Matthew J Jansma; Thomas R Hoye
Journal:  Nat Protoc       Date:  2020-07       Impact factor: 13.491

4.  Stereochemical revision of xylogranatin F by GIAO and DU8+ NMR calculations.

Authors:  Yannan Liu; Tina A Holt; Andrei Kutateladze; Timothy R Newhouse
Journal:  Chirality       Date:  2020-03-03       Impact factor: 2.437

5.  How to fix your scientific coding errors.

Authors:  Jeffrey M Perkel
Journal:  Nature       Date:  2022-02       Impact factor: 49.962

Review 6.  Responsible modelling: Unit testing for infectious disease epidemiology.

Authors:  Tim C D Lucas; Timothy M Pollington; Emma L Davis; T Déirdre Hollingsworth
Journal:  Epidemics       Date:  2020-11-26       Impact factor: 4.396

Review 7.  The Chemistry, Biochemistry and Pharmacology of Marine Natural Products from Leptolyngbya, a Chemically Endowed Genus of Cyanobacteria.

Authors:  Yueying Li; C Benjamin Naman; Kelsey L Alexander; Huashi Guan; William H Gerwick
Journal:  Mar Drugs       Date:  2020-10-06       Impact factor: 5.118

8.  Total synthesis and complete configurational assignment of amphirionin-2.

Authors:  Shota Kato; Daichi Mizukami; Tomoya Sugai; Masashi Tsuda; Haruhiko Fuwa
Journal:  Chem Sci       Date:  2020-11-20       Impact factor: 9.825

  8 in total

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