Literature DB >> 31583438

Transgenerational activation of an autonomous DNA transposon, Dart1-24, by 5-azaC treatment in rice.

Hideki Nishimura1, Eiko Himi1, Chang-Ho Eun2,3, Hidekazu Takahashi4, Qian Qian5, Kazuo Tsugane6,7, Masahiko Maekawa8.   

Abstract

KEY MESSAGE: Dart1-24, one of the 37 autonomous DNA transposon Dart1s, was heritably activated by the demethylation of the 5' region following 5-azaC treatment of rice seeds. Transposons are controlled by epigenetic regulations. To obtain newly activated autonomous elements of Dart1, a DNA transposon, in rice, seeds of a stable pale yellow leaf (pyl-stb) mutant caused by the insertion of nDart1-0, a nonautonomous element in OsClpP5, were treated with 5-azaC, a demethylating agent. In the 5-azaC-treated M1 plants, 60-70% of the plants displayed variegated pale yellow leaf (pyl-v) phenotype, depending on the concentration of 5-azaC used, suggesting that inactivated Dart1 might become highly activated by 5-azaC treatment and nDart1-0 was excised from OsClpP5 by the activated Dart1s. Although the M2 plants derived from most of these pyl-v plants showed stable pyl phenotypes, some variegated M1 plants generated pyl-v M2 progeny. These results indicated that most M1 pyl-v phenotypes at M1 were not heritable. Dart1-24, 1-27 and 1-28 were expressed in the M2 pyl-v plants, and mapping analysis confirmed that Dart1-24 was newly activated. Further, the transgenerational activation of Dart1-24 was demonstrated to be caused by the demethylation of nucleotides in its 5' region.

Entities:  

Keywords:  5-Azacytidine; Autonomous element; DNA transposon; Demethylation; Rice

Mesh:

Substances:

Year:  2019        PMID: 31583438     DOI: 10.1007/s00122-019-03429-7

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  25 in total

1.  Distribution and mapping of an active autonomous aDart element responsible for mobilizing nonautonomous nDart1 transposons in cultivated rice varieties.

Authors:  Hideki Nishimura; Nisar Ahmed; Kazuo Tsugane; Shigeru Iida; Masahiko Maekawa
Journal:  Theor Appl Genet       Date:  2007-12-04       Impact factor: 5.699

Review 2.  Transposable elements and the epigenetic regulation of the genome.

Authors:  R Keith Slotkin; Robert Martienssen
Journal:  Nat Rev Genet       Date:  2007-04       Impact factor: 53.242

3.  Mutant resources in rice for functional genomics of the grasses.

Authors:  Arjun Krishnan; Emmanuel Guiderdoni; Gynheung An; Yue-ie C Hsing; Chang-deok Han; Myung Chul Lee; Su-May Yu; Narayana Upadhyaya; Srinivasan Ramachandran; Qifa Zhang; Venkatesan Sundaresan; Hirohiko Hirochika; Hei Leung; Andy Pereira
Journal:  Plant Physiol       Date:  2009-01       Impact factor: 8.340

4.  An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress.

Authors:  Hidetaka Ito; Hervé Gaubert; Etienne Bucher; Marie Mirouze; Isabelle Vaillant; Jerzy Paszkowski
Journal:  Nature       Date:  2011-03-13       Impact factor: 49.962

5.  TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition.

Authors:  Akiko Yoshida; Masafumi Sasao; Naoko Yasuno; Kyoko Takagi; Yasufumi Daimon; Ruihong Chen; Ryo Yamazaki; Hiroki Tokunaga; Yoshinori Kitaguchi; Yutaka Sato; Yoshiaki Nagamura; Tomokazu Ushijima; Toshihiro Kumamaru; Shigeru Iida; Masahiko Maekawa; Junko Kyozuka
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-24       Impact factor: 11.205

6.  Retrotransposon Insertion and DNA Methylation Regulate Aluminum Tolerance in European Barley Accessions.

Authors:  Miho Kashino-Fujii; Kengo Yokosho; Naoki Yamaji; Miki Yamane; Daisuke Saisho; Kazuhiro Sato; Jian Feng Ma
Journal:  Plant Physiol       Date:  2018-08-09       Impact factor: 8.340

7.  Activation and epigenetic regulation of DNA transposon nDart1 in rice.

Authors:  Chang-Ho Eun; Kyoko Takagi; Kyeung-Il Park; Masahiko Maekawa; Shigeru Iida; Kazuo Tsugane
Journal:  Plant Cell Physiol       Date:  2012-04-17       Impact factor: 4.927

Review 8.  Natural and artificial mutants as valuable resources for functional genomics and molecular breeding.

Authors:  Shu-Ye Jiang; Srinivasan Ramachandran
Journal:  Int J Biol Sci       Date:  2010-04-28       Impact factor: 6.580

Review 9.  Gene disruptions using P transposable elements: an integral component of the Drosophila genome project.

Authors:  A C Spradling; D M Stern; I Kiss; J Roote; T Laverty; G M Rubin
Journal:  Proc Natl Acad Sci U S A       Date:  1995-11-21       Impact factor: 11.205

Review 10.  Plant genome editing with TALEN and CRISPR.

Authors:  Aimee Malzahn; Levi Lowder; Yiping Qi
Journal:  Cell Biosci       Date:  2017-04-24       Impact factor: 7.133

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