Literature DB >> 31580950

Trade-offs between gene expression, growth and phenotypic diversity in microbial populations.

Juhyun Kim1, Alexander Darlington2, Manuel Salvador1, José Utrilla3, José I Jiménez4.   

Abstract

Bacterial cells have a limited number of resources that can be allocated for gene expression. The intracellular competition for these resources has an impact on the cell physiology. Bacteria have evolved mechanisms to optimize resource allocation in a variety of scenarios, showing a trade-off between the resources used to maximise growth (e.g. ribosome synthesis) and the rest of cellular functions. Limitations in gene expression also play a role in generating phenotypic diversity, which is advantageous in fluctuating environments, at the expenses of decreasing growth rates. Our current understanding of these trade-offs can be exploited for biotechnological applications benefiting from the selective manipulation of the allocation of resources.
Copyright © 2019 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Entities:  

Year:  2019        PMID: 31580950     DOI: 10.1016/j.copbio.2019.08.004

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  18 in total

1.  A quantitative method for proteome reallocation using minimal regulatory interventions.

Authors:  Gustavo Lastiri-Pancardo; Jonathan S Mercado-Hernández; Juhyun Kim; José I Jiménez; José Utrilla
Journal:  Nat Chem Biol       Date:  2020-07-13       Impact factor: 15.040

2.  Protein concentration fluctuations in the high expression regime: Taylor's law and its mechanistic origin.

Authors:  Alberto Stefano Sassi; Mayra Garcia-Alcala; Maximino Aldana; Yuhai Tu
Journal:  Phys Rev X       Date:  2022-03-17       Impact factor: 14.417

Review 3.  Advances and prospects in metabolic engineering of Escherichia coli for L-tryptophan production.

Authors:  Shuai Liu; Jian-Zhong Xu; Wei-Guo Zhang
Journal:  World J Microbiol Biotechnol       Date:  2022-01-06       Impact factor: 3.312

4.  Process intensification at the expression system level for the production of 1-phosphate aldolase in antibiotic-free E. coli fed-batch cultures.

Authors:  Martina Pasini; Alfred Fernández-Castané; Gloria Caminal; Tim W Overton; Pau Ferrer
Journal:  J Ind Microbiol Biotechnol       Date:  2022-07-30       Impact factor: 4.258

5.  Picking the right metaphors for addressing microbial systems: economic theory helps understanding biological complexity.

Authors:  Juhyun Kim; Rafael Silva-Rocha; Víctor de Lorenzo
Journal:  Int Microbiol       Date:  2021-07-16       Impact factor: 2.479

6.  Multiscale Assay of Unlabeled Neurite Dynamics Using Phase Imaging with Computational Specificity.

Authors:  Mikhail E Kandel; Eunjae Kim; Young Jae Lee; Gregory Tracy; Hee Jung Chung; Gabriel Popescu
Journal:  ACS Sens       Date:  2021-04-21       Impact factor: 7.711

Review 7.  Microbial adaptation to different environmental conditions: molecular perspective of evolved genetic and cellular systems.

Authors:  Atif Khurshid Wani; Nahid Akhtar; Farooq Sher; Acacio Aparecido Navarrete; Juliana Heloisa Pinê Américo-Pinheiro
Journal:  Arch Microbiol       Date:  2022-01-19       Impact factor: 2.552

8.  Cerebrospinal fluid (CSF) augments metabolism and virulence expression factors in Acinetobacter baumannii.

Authors:  Jasmine Martinez; Chelsea Razo-Gutierrez; Casin Le; Robert Courville; Camila Pimentel; Christine Liu; Sammie E Fung; Marisel R Tuttobene; Kimberly Phan; Alejandro J Vila; Parvin Shahrestani; Veronica Jimenez; Marcelo E Tolmasky; Scott A Becka; Krisztina M Papp-Wallace; Robert A Bonomo; Alfonso Soler-Bistue; Rodrigo Sieira; Maria Soledad Ramirez
Journal:  Sci Rep       Date:  2021-02-26       Impact factor: 4.996

9.  An endoribonuclease-based feedforward controller for decoupling resource-limited genetic modules in mammalian cells.

Authors:  Ross D Jones; Yili Qian; Velia Siciliano; Breanna DiAndreth; Jin Huh; Ron Weiss; Domitilla Del Vecchio
Journal:  Nat Commun       Date:  2020-11-10       Impact factor: 14.919

10.  Plant invasion impacts on fungal community structure and function depend on soil warming and nitrogen enrichment.

Authors:  M A Anthony; K A Stinson; J A M Moore; S D Frey
Journal:  Oecologia       Date:  2020-11-03       Impact factor: 3.225

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