The 15N isotope pool dilution (IPD) technique is the only available method for measuring gross ammonium (NH4 +) production and consumption rates. Rapid consumption of the added 15N-NH4 + tracer is commonly observed, but the processes responsible for this consumption are not well understood. The primary objectives of this study were to determine the relative roles of biotic and abiotic processes in 15N-NH4 + sconsumption and to investigate the validity of one of the main assumptions of IPD experiments, i.e., that no reflux of the consumed 15N tracer occurs during the course of the experiments. We added a 15N-NH4 + tracer to live and sterile (autoclaved) soil using mineral topsoil from a beech forest and a grassland in Austria that differed in NH4 + concentrations and NH4 + consumption kinetics. We quantified both biotic tracer consumption (i.e. changes in the concentrations and 15N enrichments of NH4 +, dissolved organic N (DON), NO3 - and the microbial N pool) and abiotic tracer consumption (i.e., fixation by clay and/or humic substances). We achieved full recovery of the 15N tracer in both soils over the course of the 48 h incubation. For the forest soil, we found no rapid consumption of the 15N tracer, and the majority of tracer (78%) remained unconsumed at the end of the incubation period. In contrast, the grassland soil showed rapid 15N-NH4 + consumption immediately after tracer addition, which was largely due to both abiotic fixation (24%) and biotic processes, largely uptake by soil microbes (10%) and nitrification (13%). We found no evidence for reflux of 15N-NH4 + over the 48 h incubation period in either soil. Our study therefore shows that 15N tracer reflux during IPD experiments is negligible for incubation times of up to 48 h, even when rapid NH4 + consumption occurs. Such experiments are thus robust to the assumption that immobilized labeled N is not re-mobilized during the experimental period and does not impact calculations of gross N mineralization.
The 15N isotope pool dilution (IPD) technique is the only available method for measuring gross ammonium (NH4 +) production and consumption rates. Rapid consumption of the added 15N-NH4 + tracer is commonly observed, but the processes responsible for this consumption are not well understood. The primary objectives of this study were to determine the relative roles of biotic and abiotic processes in 15N-NH4 + sconsumption and to investigate the validity of one of the main assumptions of IPD experiments, i.e., that no reflux of the consumed 15N tracer occurs during the course of the experiments. We added a 15N-NH4 + tracer to live and sterile (autoclaved) soil using mineral topsoil from a beech forest and a grassland in Austria that differed in NH4 + concentrations and NH4 + consumption kinetics. We quantified both biotic tracer consumption (i.e. changes in the concentrations and 15N enrichments of NH4 +, dissolved organic N (DON), NO3 - and the microbial N pool) and abiotic tracer consumption (i.e., fixation by clay and/or humic substances). We achieved full recovery of the 15N tracer in both soils over the course of the 48 h incubation. For the forest soil, we found no rapid consumption of the 15N tracer, and the majority of tracer (78%) remained unconsumed at the end of the incubation period. In contrast, the grassland soil showed rapid 15N-NH4 + consumption immediately after tracer addition, which was largely due to both abiotic fixation (24%) and biotic processes, largely uptake by soil microbes (10%) and nitrification (13%). We found no evidence for reflux of 15N-NH4 + over the 48 h incubation period in either soil. Our study therefore shows that 15N tracer reflux during IPD experiments is negligible for incubation times of up to 48 h, even when rapid NH4 + consumption occurs. Such experiments are thus robust to the assumption that immobilized labeled N is not re-mobilized during the experimental period and does not impact calculations of gross N mineralization.
Entities:
Keywords:
Abiotic N fixation; Gross N mineralization; Gross ammonium consumption; Isotope pool dilution; Soil N cycle; Tracer reflux
Nitrogen (N), in its inorganic forms ammonium (NH4+)
and nitrate (NO3−), is often considered to be the
limiting nutrient for plants in terrestrial ecosystems (Falkowski et al., 2008). Primary production, nitrification and
denitrification are controlled by the rates at which inorganic N is both produced
via mineralization of organic N and biological N fixation and
consumed by biotic and abiotic processes. The understanding of this continuous
cycling between organic and inorganic nitrogen forms is therefore of fundamental
importance for estimating plant-available N in agricultural and natural soil systems
(Hadas et al., 1992; Vitousek et al., 2002; Ward, 2012). A powerful tool for the determination of soil N
transformation processes is the isotope pool dilution (IPD) technique (Barraclough, 1991; Di et al., 2000; Kirkham and
Bartholomew, 1954; Wanek et al.,
2010), which allows to estimate both rates of gross production and gross
consumption of major plant nutrients in soil. This technique has been used across a
wide range of natural and agricultural systems to study N transformation rates in
soil (e.g., Booth et al., 2005, 2006; Hart et
al., 1994; Murphy et al., 2003),
and is particularly recognized as the recommended method to obtain estimates on soil
N dynamics (Hart et al., 1994). Depending on
tracer application approaches e.g. to intact soil-plant systems in situ or to sieved
soils, plant mediated processes are included such as root uptake of inorganic N or
tracer dynamics only reflect microbial processes such as in sieved soils (Murphy et al., 2003; Rütting et al., 2011).The IPD approach relies on labeling the target pool, i.e. the product pool of
the reaction to be measured, which in the case of N mineralization is the
NH4+ pool, with 15N-enriched tracer
(15N-NH4+). The isotopic tracer is then diluted
as a consequence of mineralization of unlabeled organic N to
NH4+. Gross N mineralization (i.e.,
NH4+ production or influx) and gross
NH4+ consumption (i.e., NH4+ efflux)
are then calculated from the change in size of the total NH4+
pool (14N + 15N), and from the decline in the 15N
enrichment above natural abundance over time (Barraclough, 1991; Hart et al.,
1994; Kirkham and Bartholomew,
1954; Murphy et al., 2003). Kirkham and Bartholomew (1954) stated that the
following assumptions need to be met in order to convert the measured quantities and
isotope ratios to absolute rates: (i) the isotopically heavy (tracer) and the
lighter molecules (tracee) behave in the same way in a soil; (ii) mineralization and
immobilization rates remain constant during the interval between successive
measurements; (iii) the ratio of tracer to tracee in the efflux is in proportion to
that of the labeled pool, and (iv) immobilized labeled N is not remobilized during
the experimental period.The last of these key assumptions – no recycling of tracer consumed
during the experiment – could be violated during IPD experiments if rapid
consumption of the tracer takes place. It is well known that such a reflux of
15N tracer into the NH4+ pool could lead to a
substantial error in calculations, resulting in an underestimation of gross
mineralization and consumption rates (Barraclough and
Puri, 1995; Bjarnason, 1988; Davidson et al., 1991). Rapid consumption of
15N-NH4+ has been reported by several studies
(e.g. > 50% tracer loss within minutes), but it is not clear which
consumption processes are involved or whether remobilization of the 15N
tracer is likely (Davidson et al., 1991;
Kowalenko and Cameron, 1978; Morier et al., 2008). We here define all
processes removing NH4+ from the available
NH4+ pool as consumption processes, following the accepted
terminology (Booth et al., 2005; Murphy et al., 2003), which can be further
distinguished into biotic NH4+ consumption (i.e., microbial
uptake and nitrification; hereafter “immobilization”) and abiotic
NH4+ consumption (i.e., fixation by the mineral or organic
soil fraction; hereafter “fixation”). Biotic processes are often
assumed to be the dominant consumptive processes in IPD experiments lasting for a
few days (Monaghan and Barraclough, 1995;
Morier et al., 2008; Trehan, 1996). Indeed, several authors have
reported microbial uptake of inorganic and organic compounds within minutes and even
seconds after tracer addition (Farrell et al.,
2011; Hill et al., 2012; Jones et al., 2013; Tahovská et al., 2013; Wilkinson et al., 2014). Nevertheless, others have suggested abiotic
fixation to be the main mechanism explaining rapid NH4+
consumption (Davidson et al., 1991; Johnson et al., 2000; Trehan, 1996). In fact, NH4+ fixation by
clay minerals is known to occur within h after NH4+ addition
(Cavalli et al., 2015; Nieder et al., 2011; Nõmmik and Vahtras, 1982). Physical sorption or
chemisorption to organic matter might also be responsible for the removal of
15N-NH4+ from the extractable N pool (Mortland and Wolcott, 1965; Nieder et al., 2011; Nõmmik and Vahtras, 1982). However, despite the
potential for biotic and abiotic processes to rapidly consume
15N-NH4+ during IPD experiments, the sinks
involved have not as yet been clearly quantified.The objective of this study was to determine the fate of added
15N-NH4+ during the duration that
15N-IPD experiments usually last (i.e., < 48 h) in two sieved
soils that differ in their NH4+ consumption rates. We
considered all possible sources of tracer reflux to evaluate whether the requirement
that consumed labeled N is not remobilized during the experimental duration of
normal IPD experiments is valid. Additionally we investigated the constancy of
transformation rates over time. We hypothesized that rapidly consumed 15N
tracer is mainly subjected to biotic (microbial) immobilization processes, that the
15N tracer can therefore be remineralized or released during the
incubation period, and that such reflux causes an underestimation of gross N
mineralization fluxes in soils that exhibit rapid
15N-NH4+ consumption.
Materials and methods
Sampling site and soil description
Soils were collected from two sites in Austria differing in vegetation
composition and soil pH (Table 1). Top
soils were sampled from a beech (Fagus sylvatica L.) forest (N
48.228656°, E 16.260713°, 382 m a.s.l., Schottenwald, Vienna) and
from a permanent grassland (N 48.049063°, E 16.197592°, 323 m
a.s.l., Mödling, Lower Austria). The soils are hereafter referred to as
“forest” and “grassland” soil, respectively. The
forest soil is classified as a dystric Cambisol (Kaiser et al., 2010) and the grassland soil as a Cambisol (Nestroy et al., 2011). Samples were taken
from the upper 10 cm of the mineral soil (A) horizon in October 2014. The soil
was sieved to 2 mm and stored at 4°C until experiments were performed.
Soil pH was measured in 10 mM CaCl2. Total carbon (C) and N contents
were measured in finely ground, oven dried (105°C, 24 h) soil using an
elemental analyzer (EA1110, CE Instruments, Milan, IT) coupled to a continuous
flow stable isotope ratio mass spectrometer (DeltaPLUS, Thermo Finnigan, Bremen,
DE) (EA–IRMS). Soil ammonium contents were determined photometrically in
1 M KCl extracts [soil to extractant ratio of 1:7.5 (w:v)] based on the
Berthelot reaction (Hood-Nowotny et al.,
2010). Soil texture analysis was done based on a micropipette method
modified from Miller and Miller (1987),
by using 5% sodium hexametaphosphate as a dispergent.
Table 1
Selected soil characteristics of the top soil (0–10 cm) of the forest and
the grassland soil (means ± 1 SE, n = 3).
Soil parameter
Forest
Grassland
Soil pH
4.0 ± 0.0
6.0 ± 0.0
Soil texture
Clay (%)
16.3 ± 0.1
26.2 ± 1.3
Silt (%)
63.4 ± 0.5
56.1 ± 1.7
Sand (%)
20.3 ± 0.6
17.7 ± 1.0
Soil C & N content
Total C (%)
3.4 ± 0.7
2.9 ± 0.5
Total N (%)
0.2 ± 0.0
0.3 ± 0.1
Soil C:N ratio
13.4 ± 0.2
10.1 ± 0.2
Soil NH4+ concentration
(μg N g−1 d.w.)
29.2 ± 0.7
1.3 ± 0.1
15N-NH4+ tracer
recovery
(%; after 15 min)
99 ± 0.2
41 ± 2.8
The soils were selected because of their similarity in general soil
properties, such as soil texture (silt loam) and C and N content, but they
differed considerably in soil pH and available NH4+
content (Table 1). Additionally, the
soils strongly differed in their consumption of added
15NH4+ as determined in a preliminary
tracer recovery experiment, in which both soils were labeled with 10 atom%
(15NH4+)2SO4 solution
(20% of the initial NH4+ pool) and after 15 min extracted
with 0.5 M K2SO4 [soil to extractant ratio of 1:7.5
(w:v)]. We found that 99% of the added 15N tracer could be recovered
as NH4+ from the forest soil but only 41% from the
grassland soil (Table 1).
Experimental design
The IPD assay was performed with two treatments, live
(non–-sterilized) and sterilized (autoclaved) soil, to distinguish
between biotic immobilization processes and abiotic fixation (Fig. 1). Five consecutive measurements of
concentrations and isotopic composition of NH4+,
NO3−, microbial biomass N (Nmic),
and dissolved organic N (DON) were taken over the course of 48 h. To obtain
high-resolution time kinetics of measured processes, we stopped incubations
within 2–3 min (0 h), 0.25 h, 3.5 h, 24 h, and 48 h after tracer
addition. We thereby accommodated the standard experimental duration suggested
by Murphy et al. (2003) (i.e.
t1: 4 h–24 h; t2 48 h–144 h), with two
additional early sampling points to track rapid consumptive processes. In
addition, the contribution of abiotic fixation (i.e., fixation by clay and humic
substances) was determined at two fixed time points (0 h and 24 h) in live soils
(Fig. 1).
Fig. 1
Overview of experimental design of the isotope pool dilution experiment. The IPD
assay was performed with two treatments, live (non–sterilized) and
sterilized (auto-claved) soil, to distinguish between biotic immobilization
processes and abiotic fixation. Five consecutive measurements of concentrations
and isotopic composition of NH4+,
NO3−, microbial biomass N (Nmic),
and dissolved organic N (DON) were taken over the course of 48 h. To obtain
high-resolution time kinetics of measured processes, we stopped incubations
immediately (0 h), 0.25 h, 3.5 h, 24 h, and 48 h after label addition. In
addition, the contribution of abiotic fixation (i.e., fixation by clay and humic
substances) was determined at two fixed time points (0 h and 24 h).
Soil sample preparation and sterilization procedure
We adjusted the soils to approximately 50% water holding capacity (WHC)
prior to the IPD experiment. Following this, 4 g of fresh soil was weighed into
50 mL glass vials (Crimp Top Headspace Vials, Supelco, US) and covered with
Parafilm (live soils) and aluminum foil (soils to be autoclaved). The soils were
prepared in triplicates for each time period, treatment (control or autoclaving)
and extraction method (± chloroform). Part of the soil samples were
sterilized by autoclaving twice at 121°C for 20 min (Wolf et al., 1989). Between the two
autoclaving cycles, samples were incubated at 20°C for 2 days, to allow
spores to germinate prior to the second autoclaving cycle. Two hours passed
between the second autoclaving cycle and the start of the tracer experiment
during which samples were allowed to cool to room temperature and the water
content was checked gravimetrically.
Isotope pool dilution experiment
Shortly before the experiment, soil NH4+ contents
were determined in soil extracts [1 M KCl, soil to extractant ratio of 1:7.5
(w:v)], based on the Berthelot reaction (Hood-Nowotny et al., 2010). A maximum of 20% of the initial
NH4+ pool of live soils was added as
15N-NH4+ tracer solution at 10 atom%. This
approach increased the product pool as little as possible (thus avoiding
stimulation of microbial NH4+ immobilization processes)
whilst also ensuring sufficient enrichment of the NH4+
pool with 15N-NH4+ to facilitate high
measurement precision (Davidson et al.,
1991; Di et al., 2000). We
applied 400 μL tracer solution (0.5 mM and 0.1 mM
(15NH4)2SO4 for the forest and
grassland soil, respectively) to each sample (4 g fresh weight) in multiple
drops across the soil surface and mixed by shaking to achieve homogeneous
labeling and a SWC of 70% WHC. The samples were then incubated at 20°C in
the darkness for the given incubation periods.The incubations were stopped by extraction with 30 mL 0.5 M
K2SO4 solution. The vials were capped with air tight
butyl septa and crimp seals (Supelco, US), and shaken horizontally for 30 min at
150 rpm on an orbital shaker. Following extraction, all soil suspensions were
gravity filtered through ashless Whatman filter papers. Filters were
pre–rinsed with 0.5 M K2SO4 and deionized water and
dried in a drying oven at 60°C to avoid the variable
NH4+ contamination from the filter paper. All soil
extracts and the extracted soil residues remaining in the filters (see below,
determination of fixed N) were stored at –20°C for further
analysis.
Determination of isotope ratios and concentrations of
NH4+, NO3−, DON and
microbial biomass N
Filtered extracts were analyzed for the concentration and isotopic
composition of NH4+ to calculate gross mineralization and
consumption rates, and to estimate the recovery of added
15NH4+ over time. We prepared the extracts
for isotope ratio mass spectrometry using a micro diffusion approach following
Lachouani et al. (2010). Briefly, 10
mL aliquots of samples were diffused with 100 mg magnesium oxide (MgO) into
teflon-coated acid traps for 48 h on an orbital shaker. The traps were dried and
subjected to EA–IRMS for 15N:14N analysis of
NH4+.Concentrations and N isotope ratios of NO3−
in extracts were determined using a method that is based on the conversion of
NO3− to NO2− with
vanadium (III) chloride (VCl3) and reduction of
NO2− to N2O by sodium azide (Lachouani et al., 2010). Concentrations and
N isotope ratios of the resulting N2O were determined by
purge–and–trap isotope ratio mass spectrometry (PT–IRMS),
using a Gasbench II headspace analyzer (Thermo Fisher, Bremen, DE) with a
cryo–focusing unit, coupled to a Finnigan Delta V Advantage IRMS (Thermo
Fisher, Bremen, DE).Concentrations of DON were calculated from the difference between total
dissolved N (TDN) and inorganic N (i.e., NH4+ and
NO3−), and the N isotope ratio of DON was
calculated using an isotopic mass balance equation (Fry, 2006). Determination of TDN was carried out by
conversion of DON and NH4+ to
NO3− by alkaline persulfate oxidation (Cabrera and Beare, 1993; Doyle et al., 2004; Lachouani et al., 2010) and subsequent measurement of
formed NO3− by the VCl3-azide method
via PT-IRMS as described above. Complete conversion of DON
to NO3− was validated by the parallel digestion of
15N labeled glycine standards (at different atom%
15N), along with unlabeled glycine standards at different
concentrations and blanks (Lachouani et al.,
2010).For determination of microbial biomass N (Nmic) we performed
a simultaneous chloroform fumigation extraction (sCFE) method modified from
Setia et al. (2012), thus avoiding
relatively long fumigation periods used in the traditional CFE method (Brookes et al., 1985; Tate et al., 1988). For sCFE we carried out parallel soil
labeling experiments and performed extractions with 30 mL 0.5 M
K2SO4 solution amended with 0.5 mL of EtOH-free
CHCl3. Nmic was calculated from the difference between
TDN extracted by 0.5 M K2SO4 with and without addition of
liquid chloroform (Setia et al., 2012)
and its isotope ratio using an isotopic mass balance equation (Fry, 2006). We did not apply a conversion
factor (KEN) to correct for non–extractable
microbial N, such as N bound in cell walls (Brookes et al., 1985; Jenkinson et
al., 2004) since assimilated 15N is supposed to be still
in relatively labile forms at least after one day of incubation (Davidson et al., 1991).
Determination of abiotic fixation in inorganic and organic nitrogen
pools
Live soils from the sCFE approach, i.e., pre-extracted with
chloroform-amended K2SO4 solution can only hold
15NH4+ consumed by abiotic fixation since
NH4+, NO3−, DON and
labile Nmic has already been extracted. We thus determined the total
fixed N (TNfixed) content and the isotopic composition for all live
soil samples subjected to sCFE 0 h and 24 h after tracer addition. Frozen,
pre-extracted live soil residues were homogenized with a spatula, weighed into
100 mg aliquots and washed with 1.5 mL ultrapure water (shaken for 15 min at 140
rpm) to eliminate any remaining extractant and extractable N. Following
centrifugation (1500×g for 10 min), the supernatant was discarded and the
remaining soil was dried at 60 °C for two days, ground, weighed into tin
capsules and measured for N content and for N isotopic composition
via EA–IRMS. We additionally analyzed a set of
control soils that received no 15N amendment using the same procedure
to correct TNfixed for background 15N levels.We distinguished between 15Nfixed held within the
clay lattice (i.e., the mineral fraction) and 15Nfixed
held by the soil organic material following a standard extraction procedure for
soil organic matter (Stevenson, 1994).
Specifically, a second set of soil aliquots (100 mg) was washed with 1.5 mL
ultrapure water, centrifuged, the supernatant decanted and 0.5 mL 0.5 M NaOH
added to the soil at a ratio of 1:5 (soil:NaOH; Wolf et al., 1994). The soils were then extracted for 18 h (2 h in
an ultrasonic bath, 16 h on an orbital shaker at 150 rpm) and centrifuged
(1500×g for 10 min). Then a 50 μL aliquot of
the supernatant (containing humic compounds) was pipetted into tin capsules,
dried (60°C until dry) and measured for N content and N isotopic
composition via EA–IRMS. Another set of unlabeled soil
samples was treated as above and served as 15N natural abundance
blanks for calculations. After correcting for soil organic matter extraction
efficiency (approximately 80%, Stevenson,
1994), we subtracted the 15N recovery of humic substances
from the 15N recovery in TNfixed to obtain the
15N recovery of 15N fixed by the mineral fraction of
the soil.
Data and statistical analyses
In order to investigate the fate of the 15N tracer, we
calculated the recovery rate of the added 15N for all N pools as the
total amount of 15N recovered divided by the amount added (Hart et al., 1994). These calculations are
based on atom percent excess (APE) values calculated for each pool as atom%
15N of the sample minus the natural 15N abundance in
unlabeled control samples, and then APE divided by 100 and multiplied by the
pool size.Gross NH4+ production (GP; Equation (1)) and gross
NH4+ consumption (GC; Equation (2)) were calculated for all treatments and time
intervals following Kirkham and Bartholomew
(1954):
Where t1 and t2 represent
incubation stop times, Ct1 and Ct2 represent soil
NH4+ concentrations (μg N g−1
d.w.), and APE is 15N atom% excess.We used linear models (LMs) to test for effects of sterilization, time,
and their interaction on the recovery rates of the added tracer in different
pools. Models were validated graphically and, where necessary, refined to
account for unequal variance between levels of explanatory variables. We
determined the significance of fixed effects using single term deletions
combined with likelihood ratio tests (LR) followed by Tukey post-hoc tests. As
tracer recovery from the Nmic pool was not determined in sterilized
soils, we only tested for the effect of time on the recovery rate from the
Nmic pool. Finally, we performed linear regressions of time
against the natural logarithm of APE to investigate the constancy of process
rates over time. Statistical analyses were performed in R (R Foundation for Statistical Computing, Vienna, 2011) using
the packages “nlme” (Pinheiro et
al., 2016) and “MASS” (Venables and Ripley, 2002).The possible impact of 15N reflux from the Nmic
pool on gross NH4+ production rates was investigated in
both soils using sensitivity analysis. Reflux rates of
15N-NH4+ of 10%, 20%, 50%, and 100% were
simulated for the incubation period from 3.5 h to 24 h, which is considered to
be an appropriate incubation time during isotope pool dilution experiments
(Murphy et al., 2003). The initial
NH4+ concentrations and APE at t0 (3.5 h) were kept
constant, but NH4+ concentrations and APE at t1 (24 h)
were recalculated for the different scenarios. We simulated reflux for the
amount of 15N-Nmic, which was rapidly taken up by microbes
during the first 15 min of incubation time. Therefore, the APE of
15N-NH4+ for the mean atom% enrichment in
the initial incubation phase (APE at t1 =
x−APE at 0 h, 0.25 h) needed
to be recalculated. The tracer reflux was calculated at increasing rates of 10%,
20%, 50%, and 100% of 15N-Nmic. In order to correct the
APE of 15N-NH4+ at t1 for the
15N-Nmic reflux, we added the average amount of
15N-Nmic in excess at 3.5 h and 24 h to the amount of
15N-NH4+ in excess at 24 h and recalculated
it back to the APE 15N-NH4+. Since a reflux of
15N would be coupled to a reflux of NH4+ at
natural abundance we corrected the concentration of NH4+
at t1 for that amount. From the average atom% enrichment of the
NH4+ during the initial incubation phase (0
h–0.25 h), and the average amount of 15N in excess calculated
for t1, we were able to estimate the amount of
NH4+ feeding back into the available ammonium pool
concomitant with the respective amount of
15N-NH4+. We subsequently estimated the
gross NH4+ production rates to assess the importance of an
eventual reflux of labeled NH4+ taken up by microbes into
the available ammonium pool.
Results
Total 15N recovery in labile and fixed N pools
We found complete 15N recovery from live grassland and forest
soils in the combined fixed and labile N pool, the labile N pool representing
the sum of the extractable N pool (NH4+,
NO3− and DON) plus the microbial N pool (Table 2). In live forest soils we recovered
108% (0 h) and 116% (24 h) in the fixed and labile N pool, while in live
grassland soils total recoveries ranged between 111% (0 h) and 103% (24 h). Time
had a significant effect on total 15N recoveries in both soils (Table 2) but mean values were
indistinguishable from 100%, given the large variance around the mean which
arises from the propagation of measurement errors for concentration and
atom%15N from six different pools that finally make up total
15N recovered.
Table 2
Contribution of different N pools including labile N pools and abiotic fixation
by clay and humic substances as sinks of added
15N-NH4+ in live forest and live grassland
soils during the IPD experiment at incubation times 0 h and 24 h (%, means
± 1 SE, n = 3). Asterisks indicate a significant
difference between the time points 0 h and 24 h for each individual soil
(t-test).
N pool
Forest
Grassland
0 h
24 h
0 h
24 h
NH4+
102 ± 1.5
95.5 ± 0.4
*
61.6 ± 2.5
1.5 ± 0.7
*
NO3−
0.3 ± 0.0
4.1 ± 0.0
*
13 ± 0.1
54.9 ± 2.6
*
DON
2.6 ± 0.8
0.3 ± 0.3
*
2 ± 0.6
2.1 ± 0.4
*
Nmic
1.6 ± 0.2
0.4 ± 0.4
*
10.3 ± 1.3
6 ± 0.4
*
Clay Nfixed
1.7 ± 0.4
15.3 ± 0.9
*
23.9 ± 2.7
37.2 ± 0.4
*
Humic Nfixed
0.0 ± 0.0
0.1 ± 0.1
0.1 ± 0.1
1.1 ± 0.3
*
Sum
108 ± 11
116 ± 10
*
111 ± 6
103 ± 6
*
15N recovery in labile N pools
We recovered 99–113% of added 15N tracer from the
labile N pool in the sterile and live forest soil over the 48 h incubation
period (Fig. 2A and B), being significantly
higher in sterile than in live soils and decreasing slightly with time but only
in live forest soils (Table 3). In the
grassland soil, tracer recoveries in labile N in sterile soil were constant,
ranging from an initial 100% at 0 h to 90% after 48 h, whereas in the live
grassland soil 15N recoveries in labile N decreased significantly
from 87% at 0 h to 60% after 48 h (Fig. 2,
Table 3).
Fig. 2
Mean recovery rates (%, ± 1 SE, n = 3) measured in the
sum of labile N (A, B), NH4+ (C, D),
NO3− (E, F), DON (G, H) and Nmic (I,
J) over the incubation time in the live and sterile forest soil (left panel) and
the live and sterile grassland soil (right panel). Labile N represents the sum
of NH4+, NO3−, DON, and
Nmic. Significant differences between time points were tested by
linear models and Tukeys HSD post-hoc test and are given by different lower case
letters (live soils) or upper case letters (sterile soils); NS, not significant
(P > 0.05). Error bars fell within the confines of the symbols in some
instances.
Table 3
Effect of time (T) and sterilization (S) and significance of interaction between
time and sterilization (TxS) on recovery rates of 15N (%) from
extractable N pools (NH4
+, NO3, DON), the microbial N pool (Nmic), and
the sum of extractable and microbial N pool (labile N) in the forest soil and
the grassland soil. The model did not allow for determining the significance of
treatment and of interaction between time and sterilization on the recovery rate
of the tracer from the microbial N pool (NA), as recovery was not determined in
the sterilized soils. Values are given for the likelihood ratio test (LR), the
degrees of freedom (df), and the significance level of the
individual term or the interaction term on the recovery rate of 15N.
Asterisks indicate the significance of a single variable (T, S) or the
interaction of variables (TxS) on the recovery rate of 15N (*P
< 0.05, **P < 0.01, ***P
< 0.001).
N pool
Factor
Forest LR
df
P
Grassland LR
df
P
NH4+
T
23.1
4,12
< 0.001***
22.0
4,11
< 0.001***
S
11.7
1,12
< 0.001***
94.3
1,11
< 0.001***
TxS
15.4
4,16
0.004**
70.4
4,15
< 0.001***
NO3−
T
16.3
4,11
0.003**
13.5
4,11
0.009**
S
2.3
1,11
0.132
120.5
1,11
< 0.001***
TxS
111.4
4,15
< 0.001***
111.7
4,15
< 0.001***
DON
T
36.2
4,12
< 0.001***
12.0
4,7
0.017*
S
19.9
1,12
< 0.001***
6.3
1,7
0.012*
TxS
4.7
4,16
0.321
20.3
4,11
< 0.001***
Nmic
T
23.3
4,6
< 0.001***
11.5
4,6
0.021*
S
NA
NA
NA
NA
NA
NA
TxS
NA
NA
NA
NA
NA
NA
Sum
T
12.4
4,11
0.015*
11.8
4,11
0.019*
S
45.8
1,11
< 0.001***
100.3
1,11
< 0.001***
TxS
18.3
4,15
0.001**
164.6
4,15
< 0.001***
In the forest soil, the 15N recovery in the
NH4+ pool decreased in the live soil by approximately
6% at 24 h and 23% at 48 h while in the sterile soil the recovery only varied
non-significantly between 95% and 102% (Fig.
2, Table 3). Concomitantly the
tracer recovery in the NO3− pool increased from
0.3% (0 h) to 4% at 24 h and to 7.5% after 48 h in live forest soil while in the
sterile forest soil the recovery rate remained low between 0.2% and 0.3%. We
recovered between 0.3 and 3% in the DON pool of live forest soil and up to 19%
in sterile forest soil. Sterilization increased the recovery rate of added
15N in the DON pool, but the time course was similar in sterile
and live soil samples (Fig. 2, Table 3). 15N recovery in
microbial biomass was not measured in autoclaved soil, and decreased over time
from 1.6 to 0.4% in live forest soil.In the live grassland soil, the 15N recovery in the
NH4+ pool decreased from 62% at 0 h to 1.5% after 24 h
and 48 h, while in the sterile grassland soil recovery rates ranged between 98%
(0 h) and 88% (48 h) but did not change significantly with time (Fig. 2, Table
3). In parallel to the decrease in the 15N recovery in the
NH4+ pool in the live grassland soil the recovery rate
of 15N in the NO3− pool increased
significantly from 13% (0 h) to 52% (48 h). The recovery rates for the
NO3− pool in the sterilized grassland soil
varied at around 1.7% and did not change over time. We did not observe
consistent changes in the 15N recovery in DON over incubation time,
either in live or in sterile grassland soils, with values ranging between 0 and
2% (Fig. 2, Table 3). 15N recoveries in microbial biomass in live
grassland soil declined from 10.3% (0 h) to 6.0–6.6% (24 and 48 h).
15N recovery in abiotic fixed N pools
Abiotic N fixation in clay minerals and humic substances was measured in
live soils after fumigation and extraction with K2SO4.
Total N fixation (TNfixed) increased in the forest soil, from 1.7% of
added 15N (0 h) to 15.4% (24 h, Table
2). In grassland soil a greater proportion of added
15NH4+ tracer was abiotically fixed, and
TNfixed increased from 24% to 38.3% within 24 h (Table 2). Fixed 15N from the
NH4+ pool was mainly recovered in the inorganic N
fraction (clay fixation, > 97%), organic N fixation (humic fixation)
contributing less than 3% to total abiotic fixation (Table 2).
Assessment of 15NH4+ reflux and its effect
on gross N mineralization rates
In live soils the amount of 15N recovered in different
NH4+ sinks either increased significantly over
incubation time (Forest soil: NO3−, DON,
Nfixed; Grassland soil: NO3−,
Nfixed) or did not show a clear trend (Grassland soil: DON; Fig. 2). Only in the Nmic pool, we
found a decrease of the recovery rates of added 15N in both soils,
i.e., from 1.6% to 0.4% in the forest soil and from 10.3% to 6% in the grassland
soil, while recoveries in Nfixed increased rather than decreased
(Table 2). Therefore, we identified
Nmic as the main possible source for reflux of immobilized
labeled NH4+ to the available ammonium pool over
incubation time. The possible impact of 15N reflux from the
Nmic pool on gross NH4+ production rates
was investigated in both soils using sensitivity analysis, at reflux rates of
10%, 20%, 50%, and 100% of the 15N-Nmic pool for an
incubation period from 3.5 h to 24 h. In the forest soil, the reflux caused only
a modest underestimation of gross NH4+ production rates
and at a reflux rate of 10%, NH4+ gross production rates
were not affected at all (Table 4). In
contrast, a simulated worst-case scenario for the grassland soil revealed an
underestimation of gross NH4+ production rates by up to
63% (reflux rate of 100% of the rapidly consumed
15NH4+ by soil microbes). At a reflux rate
of 50%, the rate was still underestimated by 43% and by 14% at a reflux rate of
10% of the labeled NH4+ that was rapidly taken up by
microbes (Table 4).
Table 4
Sensitivity analysis of the effect of 15N-NH4+
reflux at different rates from the Nmic pool (10%, 20%, 50%, and
100%) on the gross N mineralization rate (mean ± 1 SE, n
= 3) between incubation time 3.5 h and 24 h, simulated for the forest soil and
the grassland soil.
15N reflux (%)
Forest soil
Grassland soil
N mineralization (μg N g−1 d.w.
d−1)
Difference (%)
N mineralization (μg N g−1 d.w.
d−1)
Difference (%)
0
2.97 ± 0.2
4.07 ± 0.5
10
2.96 ± 0.2
0
3.51 ± 0.3
−14
20
2.95 ± 0.2
−1
3.11 ± 0.3
−24
50
2.93 ± 0.2
−2
2.30 ± 0.4
−43
100
2.88 ± 0.2
−3
1.51 ± 0.4
−63
Consistency of NH4+ transformation rates
To test for constant rates of isotope pool dilution over time, which
causes an exponential decline in 15N:14N ratios, we
plotted the natural logarithm of 15N atom percent excess against
incubation time. Given constant rates this plot provides a linear relationship,
while declines or increases in isotope pool dilution rates cause curvilinearity
(Fig. 3). In the forest soil, we found
transformation process rates to be constant between 3.5 h and 48 h
(R2 = 0.979) and in the grassland soil between 0.25 h (and 3.5 h)
and 24 h of incubation (R2 = 0.904). The 15N atom percent
excess decreased faster in the grassland soil (k = −0.128) as compared to
the forest soil (k = −0.003) in the respective incubation periods.
Calculating gross NH4+ transformation rates for these time
intervals, we found significantly higher gross N mineralization rates in the
grassland soil (5.3 ± 0.1 μg N g−1 d.w.
d−1) compared to the forest soil (2.3 ± 0.1
μg N g−1 d.w. d−1; P < 0.01;
t-test).
Fig. 3
Change in natural logarithmic atomic percent excess (APE) of
15N-NH4+ in live forest soils (A) over the
total incubation period (0 h–48 h) and (C) over incubation time 3.5
h–48 h, and in live grassland soils (B) over the total incubation period
(0 h–48 h) and (D) over incubation time 0.25 h–24 h. Data given
are means ± 1SE (n=3). The linear regressions in (C) and (D) are based on
APE estimations at three time points in the forest soil (k = −0.003,
R2 = 0.9786, P < 0.001) and in the
grassland soil (k = −0.128, R2 = 0.9044, P
< 0.001). Error bars fell within the confines of the symbols in some
instances.
Discussion
The objectives of this study were to assess the main sink pathways of
15N-NH4+ tracer during a short-term IPD
experiment and to explore whether a reflux of consumed 15N tracer into
the available NH4+ pool is likely for any of the identified
NH4+ sinks during incubation time. Such an evaluation is
important since a reflux of tracer can significantly impact gross N mineralization
rate estimates in soils.
Recovery of the 15N-NH4+ tracer
For the live forest soil, we found almost no rapid consumption of
15N tracer and the biggest proportion of the tracer (78% after 48
h) was actually recovered as NH4+ at the end of the
incubation (Fig. 2). Biological processes
(microbial uptake and nitrification) accounted only for a small proportion of
15N-NH4+ consumed during the incubation.
The remaining consumed tracer was recovered in the DON pool (13% after 48 h) and
was also found to be abiotically fixed in clay (15% after 24 h). In contrast,
the live grassland soil showed rapid 15N-NH4+
consumption and high NH4+ turnover rates, as the tracer in
the NH4+ pool was depleted by the end of the incubation
period, and nitrification was the main consumptive process (Fig. 2). The rapid consumption of
15N-NH4+ in this soil was striking because
nearly half of the tracer was consumed shortly after tracer addition, and was
clearly due to both biotic processes (microbial uptake and nitrification; 23%)
and abiotic fixation (24%). Other studies have reported that the main cause for
rapid 15N-NH4+ consumption in IPD and tracer
immobilization studies were either biotic processes (Bruun et al., 2006; Fitzhugh et al., 2003; Herrmann et
al., 2007; Hill et al., 2012;
Wilkinson et al., 2014), rapid
abiotic fixation (Davidson et al., 1991;
Kowalenko and Cameron, 1978), or both
biotic immobilization and abiotic fixation (Johnson et al., 2000; Morier et al.,
2008; Schimel and Firestone,
1989; Trehan, 1996). To which
extent one or the other process prevails depended on factors such as the soil C
and N content (Booth et al., 2005), soil
moisture (Gouveia and Eudoxie, 2007),
soil NH4+ fixation capacity, and the clay content and
composition (Nieder et al., 2011). We
found a higher proportion of the added tracer abiotically fixed in the grassland
soil compared to the forest soil. This may have resulted from a higher
NH4+ fixation capacity in the grassland soil due to
higher clay content when compared to the forest soil (clay content: Grassland:
26%; Forest: 16%) in combination with the lower initial
NH4+ concentration. Davidson et al. (1991) reported similar findings on the importance
of abiotic reactions as sinks for 15N-NH4+ in
both forest and grassland soils. Moreover, at higher NH4+
concentrations as found in the forest soil compared to the grassland soil (Fig. S1) competition for
the cation binding sites in the interlayers of 2:1 clay minerals may be
significantly increased, and consequently
15N-NH4+ being less likely to become
bound.
Reflux from abiotic sinks of NH4+
In both soils, abiotic fixation of NH4+ was almost
exclusively due to the mineral and not the organic fraction of the soil (Table 3). In general, a release of fixed
15N-NH4+ by clay minerals could occur in
quantities that affect the dynamics of exchangeable NH4+
(Matsuoka and Moritsuka, 2011). Both
processes, NH4+ fixation and the release of
NH4+ from clay minerals, are mainly controlled by ion
diffusion processes (Kowalenko and Cameron,
1978; Nõmmik, 1965;
Steffens and Sparks, 1997), and thus
primarily depend on the NH4+ concentration in the soil
solution phase. As the live forest soil showed constant
NH4+ concentrations over time (Fig. S1) and
15N recovery in the clay fixed soil fraction increased with time
(Table 3), we suggest that
re-diffusion of fixed 15N-NH4+ into the
available pool was highly unlikely for this soil. Although in the grassland soil
NH4+ concentrations decreased over time (which might
increase the likelihood of re-diffusion), the constant increase in the
15N recovery rate from the clay fixed N pool over time also
points away from a reflux of tracer from clay interlayers in the grassland soil.
Moreover, the release of clay fixed NH4+ into soil
solution is a slow process, previously being suggested to take weeks to years
(Kowalenko and Cameron, 1978; Nieder et al., 2011). Therefore, there is
no need to consider and evaluate the reflux of clay fixed
15N-NH4+ in short-term IPD experiments
lasting up to two days. Furthermore, it is unknown whether clay fixation of
15N-NH4+ is concomitant with the reciprocal
release of native, unlabeled fixed NH4+, which would
result in an overestimation of gross N mineralization rates.We found a small fraction of the abiotically fixed
15N-NH4+ bound to the humic fraction of the
soils (1.1% after 24 h in the grassland soil, Table 3). This might be due to the covalent bonding of
NH4+ in the form of ammonia (NH3) to
various functional groups in humic substances, such as ketones, or alternatively
due to physical condensation reactions of phenolic hydroxyls, hydroquinones and
quinone polymers with NH3 (Burge and
Broadbent, 1961; Nõmmik and
Vahtras, 1982; Stevenson,
1994; Thorn and Mikita, 1992).
Covalent bonding of ammonia to soil organic matter is expected to result in
fairly stable compounds that are only slowly mineralized by soil microorganisms
(Monaghan and Barraclough, 1995;
Thorn and Mikita, 1992). Since
bonding to humic substances was minimal in this study, and degradation is
supposed to be slow, we deduce that there is no need to consider the
re-mineralization of humic fixed 15N-NH4+ as a
source for reflux in this study. Our findings on the contribution of the mineral
and the organic fraction to NH4+ fixation are also
consistent with the results of the few other studies available (Kowalenko and Cameron, 1978; Nõmmik and Vahtras, 1982; Trehan, 1996).Interestingly, in the forest soil, the recovery rate of 15N
in the DON pool increased significantly over time (Fig. 2). The formation of DON, a heterogeneous mixture of compounds
(Farrell et al., 2011), results from
a complex mix of biotic and abiotic processes (Neff et al., 2003). Biotic formation of 15N labeled DON
can result from microbial NH4+ assimilation and exudation
or cell lysis (Seely and Lajtha, 1997),
which in our experiment, due to the low amount of
15N-NH4+ taken up by microbes in the forest
soil (Fig. 2), seems to contribute only to
a minor extent. However, abiotic fixation by the low-molecular weight organic
fraction of the soil, similar to bonding with humic substances as described
above, could also explain the observed increased 15N tracer recovery
in DON. In the case of the forest soil, an argument against the covalent bonding
of the labeled NH4+ would be the low soil pH of 4.
Covalent bonding of NH4+ to organic compounds has only
been reported in the form of NH3, which only becomes the dominant
form relative to NH4+ in soils under alkaline conditions
(Burge and Broadbent, 1961; Thorn and Mikita, 1992). Moreover, only few
studies reported on the biodegradability of DON and on DON mineralization (Jones et al., 2004). Jones et al. (2004) suggested that the low-molecular weight
fraction of DON comprises only 10–30% of all DON but may regulate the
rate of N mineralization and nitrification in soil directly, serving as a
microbial substrate (Jones et al., 2004;
Wilkinson et al., 2014). DON often
represents 30% or more of the total dissolved N in soil solution or soil
extracts (Christou et al., 2005; Farrell et al., 2011) and low-molecular
weight organic compounds can be taken up by the microbial community within
minutes (Hill et al., 2012; Wanek et al., 2010; Wilkinson et al., 2014). Future studies should therefore
investigate DON mineralization when considering possible refluxes of tracer
(e.g. from the DON pool) into the available NH4+ pool,
especially in IPD experiments lasting longer than one or two days.
Reflux from biotic sinks of NH4+
We found that only the recovery rate of 15N from the
microbial N pool decreased (by 40–75%) relative to the initial time point
over a 24 h incubation period (Fig. 2). Our
sensitivity analysis revealed that any reflux of
15N-NH4+ taken up by microbes into the soil
NH4+ pool likely had a negligible impact in the forest
soil during this period (Table 4).
Specifically, our simulations suggested that the gross N mineralization rate of
the forest soil could be underestimated by a maximum of 3%. In contrast,
simulations suggested that the gross N mineralization rate of the grassland soil
could be underestimated in the worst-case scenario by a maximum of 63% (Table 4), assuming all of the rapidly
consumed microbial 15N would reflux into the soil pool as
15NH4+. The low impact of simulated
microbial N reflux in the forest soil is explained by the low amount of
15N-NH4+ taken up by microbes relative to
the large NH4+ pool. In the grassland soil, a reflux of
the high amount of 15N-NH4+ taken up by
microbes, combined with the low NH4+ concentration in this
soil, had a large impact on the estimation of gross NH4+
transformation rates. Despite this, such a large reflux of 15N taken
up by microbes in the grassland soil seems unlikely during an experimental
period of only 24 h. Fast efflux of unmetabolized
15N-NH4+ from cells is always coupled to
cellular influx (uptake) of NH4+ (Ludewig et al., 2007; Morgan and Jackson, 1988), and channel- or carrier-mediated
NH4+ efflux from microbial and plant cells has been
reported (Hadas et al., 1992; von Wirén and Merrick, 2004). The
fraction of NH4+ taken up and subsequently lost by efflux
is negatively related to NH4+ assimilation, and decreases
at low substrate concentrations in plants (Forde
and Clarkson, 1999). We therefore suggest that the amount of
15NH4+ efflux is minimal under the N
limited conditions of the grassland soils, due to its low
NH4+ concentration (see also Bengtson and Bengtsson, 2005), fostering microbial
assimilation rather than efflux of NH4+.In contrast, re-mineralization of microbial N, that was previously taken
up and assimilated into organic N, would be a much slower process than microbial
NH4+ efflux. However, re-mineralization of organic
15N originating from microbes could potentially represent a
significant source of tracer reflux in the grassland soil, at rates impacting
the gross N mineralization rate. The rapid incorporation and assimilation of
15N-NH4+ into microbial biomass could
explain the decrease in 15N enrichment and 15N recovery in
the microbial N pool over time (Fig. 2,
Fig. S2), while the
microbial biomass N content, at least for the grassland soil, increased
significantly over incubation time (Fig. S1). This may be explained by continued microbial
NH4+ uptake with decreasing 15N enrichment
over time (Fig. S2) or
by technical constraints arising from the sCFE method. It is impossible to
extract the total amount of 15N taken up by microbes with the sCFE
extraction as applied in this experiment, especially if
15N-NH4+ was metabolized and built into
insoluble cellular components such as cell walls (Fierer and Schimel, 2003). In general, the application of
chloroform extraction methods only enables the measurement of soluble N
compounds within microbial cells and not insoluble compounds such as cell wall
proteins or peptidoglycans (Jenkinson et al.,
2004). This means that in grassland soils we would be facing
continuous uptake of NH4+ from soil solution, in
combination with ongoing removal from the extractable Nmic pool as
microbes produce insoluble cell components. This would ultimately result in the
decrease in the 15N recovery rate from the Nmic pool, as
found in both soils, rather than indicating 15N reflux or
remineralization from the microbial N pool. Usually, microbial
NH4+ uptake and assimilation, turnover (lysis) and
re-mineralization of microbial N is assumed to take from a few days to weeks
(Herman et al., 2006; McGill et al., 1975), which means that in a
short-term laboratory incubation of 24 h as applied in our IPD experiment,
re-mineralization of assimilated 15N-NH4+ is
relatively slow. Microbial turnover rates in temperate forest and grassland
soils have been found to range between 0.004 and 0.03 d−1
(corresponding to microbial turnover times of 30–220 days; Spohn et al., 2016a, 2016b), also playing against a strong reflux of tracer from
the microbial 15N pool due to slow turnover of microbial biomass.Therefore, our sensitivity analysis indicates that the reflux of
recently taken up 15N tracer from the microbial N pool could
potentially have a large impact on the estimation of gross N mineralization
rates, but significant reflux appears to be unlikely during incubation periods
of about 24 h. These findings are in line with other studies, for example Bengtson and Bengtsson (2005), who showed
that in IPD experiments, re-mineralization is lowest during the first two days
of incubation. Also others (Barraclough,
1995; Bjarnason, 1988; Davidson et al., 1991; Herrmann et al., 2007; Murphy et al., 2003; Wang et al., 2001) found that re-mineralization is
negligible in IPD experiments during incubation times between 24 h and up to a
few days, even in studies on rapidly immobilizing grassland soils (Davidson et al., 1991).Nonetheless, given the potential impact of reflux on gross N
transformation rates, re-mineralization fluxes should be measured directly and
accounted for in the IPD calculations. Though re-mineralization is hard to
quantify directly in soil (but has been done in soil microbial cultures; Bengtson and Bengtsson, 2005) we here
propose three approaches to assess its magnitude quantitatively in soils: (1)
Gross N mineralization fluxes apparently decline over time due to increasing
reflux of microbial 15N from biomass turnover, given the time lag of
this reflux relative to microbial NH4+ immobilization. The
decrease in gross N mineralization fluxes over time can be solved analytically
for different time intervals e.g. 4–12 h, 12–24 h, 24–48 h
and 48–96 h and then be extrapolated to the study period of 4–24
h. Alternatively this increasing reflux effect can be solved by numerical
modeling approaches such as by the Ntrace model (Rütting et al., 2011), the FLUAZ model or others (Bengtson and Bengtsson, 2005; Bjarnason, 1988). (2) Bjarnason (1988) and Herrmann et al. (2007) applied
15NO3− separately in N
mineralization experiments to follow its immobilization, assimilation and the
production of 15NH4+ as an index of microbial N
re-mineralization. However, this approach targets only the part of the microbial
community that actively assimilates NO3− and cannot
distinguish between re-mineralization of microbial N and dissimilatory nitrate
reduction to ammonium (DNRA) that produces NH4+ from
NO3− as major energy conserving mechanism.
Parallel measurements of 15Nmic might resolve some of
these issues as DNRA organisms putatively represent only a small fraction of the
heterotrophic microbial community and therefore contribute little to
15NO3− immobilization. Moreover,
this approach provides only net rates and numerical or analytical solutions need
to be used to derive gross rates of re-mineralization. (3) A third option has
recently become amenable, based on direct measurements of rates of soil
microbial gross growth and microbial biomass turnover and was applied to soil
microbial C dynamics (Spohn et al.,
2016a, 2016b). This latter
approach could be applied to gross N mineralization experiments and is based on
quantifying the 18O incorporation from added
18O-H2O into double stranded DNA (which is only
produced during microbial growth) and conversion of microbial DNA production
estimates to Nmic and microbial N allocation to growth by CFE. These
data would allow the calculation of microbial mortality rates at constant
microbial biomass and gross rates of N release from Nmic. The third
approach has however so far not been applied to such settings, and instead of
quantifying the re-mineralization bias in gross N mineralization studies allows
the partitioning between gross N mineralization from organic N in microbial
biomass/necromass (“re-mineralization”) from that of organic N
stored in more stable humic substances.
Consistency of NH4+ transformation rates over
time
Since constant process rates are a prerequisite for estimating gross N
transformation rates (Kirkham and Bartholomew,
1954), we investigated the consistency of transformation rates over
time. For the forest soil, transformation rates were approximately constant from
3.5 h after tracer addition until up to 48 h of incubation. In the grassland
soil, process rates were approximately constant from 15 min to 24 h of
incubation. Initial transformation rates (Fig.
3) were much faster prior to these periods, showing that gross N
mineralization rates were systematically overestimated during the shortest
incubation period. This is likely due to the lack of equilibration of the added
15N-NH4+ (tracer) with the native
14N-NH4+ pool (tracee) (Bjarnason, 1988; Watson et al., 2000), and relates to another key assumption
of the IPD approach, namely that tracer and tracee behave in the same way in
soils (Kirkham and Bartholomew, 1954).
Preliminary studies of the time kinetics of consumptive processes and of the
tracer/tracee mixing are thus of great importance to find a balance between: (i)
the initial time needed to achieve tracer mixing with the native pool (and
thereby achieving an identical behavior of the tracer and the tracee); and (ii)
the extent of depletion of the 15N pool by consumptive processes. In
the grassland soil, 15N-NH4+ was almost fully
depleted after only 24 h, which is also often observed in other soils (Booth et al., 2005). Such a time frame does
not allow for an equilibration time of 24 h before initial sampling as
recommended by many authors (Cliff et al.,
2002; Herrmann et al., 2007;
Murphy et al., 2003; Watson et al., 2000). In the case of rapid
depletion of the 15N pool, the use of nitrification inhibitors such
as acetylene has been suggested by some authors in order to slow down
NH4+ immobilization and to prolong incubation time
(Herrmann et al., 2007; Murphy et al., 2003). This has proven to be
a viable solution for soils showing high nitrification potential (Herrmann et al., 2007), but does not
prevent the continuous NH4+ fixation occurring due to clay
minerals as found in our soils. Also, some non–linear models, developed
to calculate gross rates for inorganic N pools that turn over within a day,
assume nitrification to be the only consumptive process for ammonium (Davidson et al., 1991), which is not in
line with our findings. In our study, a uniform mixing of the tracer solution
with the soil NH4+ and the equilibrium of tracer and
tracee seemed to be reached after an incubation time of only a few h (Barraclough, 1995; Di et al., 2000). Therefore, the estimation of gross N
mineralization rates seemed to be justifiable for a time interval between 3.5 h
and 24 h in both soils and should, at least in the grassland soil, not exceed 24
h, since errors become more significant as 15N enrichments close to
natural abundance levels are approached (Davidson et al., 1991).
Conclusion
Overall, we found that biotic immobilization and clay fixation are
responsible for the fast consumption of 15N-NH4+ in
both studied soils while humic fixation played a negligible role. Most importantly,
we showed that reflux of rapidly consumed 15N-NH4+
was relatively unlikely during our short-term laboratory IPD assay. But one should
keep in mind, as Wang et al. (2001) also
state, that re-mineralization is part of the continuous process of N
mineralization–immobilization and N turnover, both of which determine the net
release and availability of inorganic N in soil (Murphy et al., 2003; Wang et al.,
2001). Thus, depending on the primary objective of the study, one must
choose the appropriate experimental design and duration, and also the appropriate
approach for estimating gross N mineralization, either an analytical solution sensu
Kirkham and Bartholomew (1954), or a
combination of 15N tracing studies coupled to analyses
via process–based models (Andresen et al., 2015; Cliff et al.,
2002; Rütting et al., 2011;
Tietema and Wessel, 1992). However,
knowing about the inherent assumptions and potential problems of the IPD approach,
taking care in applying the method in the right way and testing the system before
applying the IPD assays, allows to estimate gross N mineralization rates (and other
soil N processes) in a reliable way.
Supplementary Material
Supplementary data related to this article can be found at http://dx.doi.org/10.1016/j.soilbio.2017.11.005.
Authors: Christina Kaiser; Marianne Koranda; Barbara Kitzler; Lucia Fuchslueger; Jörg Schnecker; Peter Schweiger; Frank Rasche; Sophie Zechmeister-Boltenstern; Angela Sessitsch; Andreas Richter Journal: New Phytol Date: 2010-06-11 Impact factor: 10.151
Authors: David L Jones; Peta L Clode; Matt R Kilburn; Elizabeth A Stockdale; Daniel V Murphy Journal: New Phytol Date: 2013-07-12 Impact factor: 10.151