Literature DB >> 31578273

Tumor Mutational Burden as a Predictive Biomarker for Response to Immune Checkpoint Inhibitors: A Review of Current Evidence.

Samuel J Klempner1,2, David Fabrizio3, Shalmali Bane4, Marcia Reinhart4, Tim Peoples5, Siraj M Ali3, Ethan S Sokol3, Garrett Frampton3, Alexa B Schrock3, Rachel Anhorn3, Prasanth Reddy3.   

Abstract

Treatment with immune checkpoint inhibitors (ICPIs) extends survival in a proportion of patients across multiple cancers. Tumor mutational burden (TMB)-the number of somatic mutations per DNA megabase (Mb)-has emerged as a proxy for neoantigen burden that is an independent biomarker associated with ICPI outcomes. Based on findings from recent studies, TMB can be reliably estimated using validated algorithms from next-generation sequencing assays that interrogate a sufficiently large subset of the exome as an alternative to whole-exome sequencing. Biological processes contributing to elevated TMB can result from exposure to cigarette smoke and ultraviolet radiation, from deleterious mutations in mismatch repair leading to microsatellite instability, or from mutations in the DNA repair machinery. A variety of clinical studies have shown that patients with higher TMB experience longer survival and greater response rates following treatment with ICPIs compared with those who have lower TMB levels; this includes a prospective randomized clinical trial that found a TMB threshold of ≥10 mutations per Mb to be predictive of longer progression-free survival in patients with non-small cell lung cancer. Multiple trials are underway to validate the predictive values of TMB across cancer types and in patients treated with other immunotherapies. Here we review the rationale, algorithm development methodology, and existing clinical data supporting the use of TMB as a predictive biomarker for treatment with ICPIs. We discuss emerging roles for TMB and its potential future value for stratifying patients according to their likelihood of ICPI treatment response. IMPLICATIONS FOR PRACTICE: Tumor mutational burden (TMB) is a newly established independent predictor of immune checkpoint inhibitor (ICPI) treatment outcome across multiple tumor types. Certain next-generation sequencing-based techniques allow TMB to be reliably estimated from a subset of the exome without the use of whole-exome sequencing, thus facilitating the adoption of TMB assessment in community oncology settings. Analyses of multiple clinical trials across several cancer types have demonstrated that TMB stratifies patients who are receiving ICPIs by response rate and survival. TMB, alongside other genomic biomarkers, may provide complementary information in selecting patients for ICPI-based therapies. © AlphaMed Press 2019.

Entities:  

Keywords:  Antibodies/therapeutic use; DNA; DNA mutational analysis; Genes; Neoplasm; Programmed cell death 1 receptor; Sequence analysis

Mesh:

Substances:

Year:  2019        PMID: 31578273      PMCID: PMC6964127          DOI: 10.1634/theoncologist.2019-0244

Source DB:  PubMed          Journal:  Oncologist        ISSN: 1083-7159


  71 in total

1.  Tumor Mutational Burden as an Independent Predictor of Response to Immunotherapy in Diverse Cancers.

Authors:  Aaron M Goodman; Shumei Kato; Lyudmila Bazhenova; Sandip P Patel; Garrett M Frampton; Vincent Miller; Philip J Stephens; Gregory A Daniels; Razelle Kurzrock
Journal:  Mol Cancer Ther       Date:  2017-08-23       Impact factor: 6.261

2.  Predictive correlates of response to the anti-PD-L1 antibody MPDL3280A in cancer patients.

Authors:  Roy S Herbst; Jean-Charles Soria; Marcin Kowanetz; Gregg D Fine; Omid Hamid; Michael S Gordon; Jeffery A Sosman; David F McDermott; John D Powderly; Scott N Gettinger; Holbrook E K Kohrt; Leora Horn; Donald P Lawrence; Sandra Rost; Maya Leabman; Yuanyuan Xiao; Ahmad Mokatrin; Hartmut Koeppen; Priti S Hegde; Ira Mellman; Daniel S Chen; F Stephen Hodi
Journal:  Nature       Date:  2014-11-27       Impact factor: 49.962

3.  Clinical Impact of Hybrid Capture-Based Next-Generation Sequencing on Changes in Treatment Decisions in Lung Cancer.

Authors:  Anna Belilovski Rozenblum; Maya Ilouze; Elizabeth Dudnik; Addie Dvir; Lior Soussan-Gutman; Smadar Geva; Nir Peled
Journal:  J Thorac Oncol       Date:  2016-11-16       Impact factor: 15.609

4.  Targeted Next Generation Sequencing Identifies Markers of Response to PD-1 Blockade.

Authors:  Douglas B Johnson; Garrett M Frampton; Matthew J Rioth; Erik Yusko; Yaomin Xu; Xingyi Guo; Riley C Ennis; David Fabrizio; Zachary R Chalmers; Joel Greenbowe; Siraj M Ali; Sohail Balasubramanian; James X Sun; Yuting He; Dennie T Frederick; Igor Puzanov; Justin M Balko; Justin M Cates; Jeffrey S Ross; Catherine Sanders; Harlan Robins; Yu Shyr; Vincent A Miller; Philip J Stephens; Ryan J Sullivan; Jeffrey A Sosman; Christine M Lovly
Journal:  Cancer Immunol Res       Date:  2016-09-26       Impact factor: 11.151

Review 5.  Progress and challenges of predictive biomarkers of anti PD-1/PD-L1 immunotherapy: A systematic review.

Authors:  Feifei Teng; Xiangjiao Meng; Li Kong; Jinming Yu
Journal:  Cancer Lett       Date:  2017-11-16       Impact factor: 8.679

6.  Blood-based tumor mutational burden as a predictor of clinical benefit in non-small-cell lung cancer patients treated with atezolizumab.

Authors:  David R Gandara; Sarah M Paul; Marcin Kowanetz; Erica Schleifman; Wei Zou; Yan Li; Achim Rittmeyer; Louis Fehrenbacher; Geoff Otto; Christine Malboeuf; Daniel S Lieber; Doron Lipson; Jacob Silterra; Lukas Amler; Todd Riehl; Craig A Cummings; Priti S Hegde; Alan Sandler; Marcus Ballinger; David Fabrizio; Tony Mok; David S Shames
Journal:  Nat Med       Date:  2018-08-06       Impact factor: 53.440

7.  Molecular Determinants of Response to Anti-Programmed Cell Death (PD)-1 and Anti-Programmed Death-Ligand 1 (PD-L1) Blockade in Patients With Non-Small-Cell Lung Cancer Profiled With Targeted Next-Generation Sequencing.

Authors:  Hira Rizvi; Francisco Sanchez-Vega; Konnor La; Walid Chatila; Philip Jonsson; Darragh Halpenny; Andrew Plodkowski; Niamh Long; Jennifer L Sauter; Natasha Rekhtman; Travis Hollmann; Kurt A Schalper; Justin F Gainor; Ronglai Shen; Ai Ni; Kathryn C Arbour; Taha Merghoub; Jedd Wolchok; Alexandra Snyder; Jamie E Chaft; Mark G Kris; Charles M Rudin; Nicholas D Socci; Michael F Berger; Barry S Taylor; Ahmet Zehir; David B Solit; Maria E Arcila; Marc Ladanyi; Gregory J Riely; Nikolaus Schultz; Matthew D Hellmann
Journal:  J Clin Oncol       Date:  2018-01-16       Impact factor: 44.544

8.  Comprehensive Analysis of Hypermutation in Human Cancer.

Authors:  Brittany B Campbell; Nicholas Light; David Fabrizio; Matthew Zatzman; Fabio Fuligni; Richard de Borja; Scott Davidson; Melissa Edwards; Julia A Elvin; Karl P Hodel; Walter J Zahurancik; Zucai Suo; Tatiana Lipman; Katharina Wimmer; Christian P Kratz; Daniel C Bowers; Theodore W Laetsch; Gavin P Dunn; Tanner M Johanns; Matthew R Grimmer; Ivan V Smirnov; Valérie Larouche; David Samuel; Annika Bronsema; Michael Osborn; Duncan Stearns; Pichai Raman; Kristina A Cole; Phillip B Storm; Michal Yalon; Enrico Opocher; Gary Mason; Gregory A Thomas; Magnus Sabel; Ben George; David S Ziegler; Scott Lindhorst; Vanan Magimairajan Issai; Shlomi Constantini; Helen Toledano; Ronit Elhasid; Roula Farah; Rina Dvir; Peter Dirks; Annie Huang; Melissa A Galati; Jiil Chung; Vijay Ramaswamy; Meredith S Irwin; Melyssa Aronson; Carol Durno; Michael D Taylor; Gideon Rechavi; John M Maris; Eric Bouffet; Cynthia Hawkins; Joseph F Costello; M Stephen Meyn; Zachary F Pursell; David Malkin; Uri Tabori; Adam Shlien
Journal:  Cell       Date:  2017-10-19       Impact factor: 41.582

9.  High response rate to PD-1 blockade in desmoplastic melanomas.

Authors:  Zeynep Eroglu; Jesse M Zaretsky; Siwen Hu-Lieskovan; Dae Won Kim; Alain Algazi; Douglas B Johnson; Elizabeth Liniker; Rodrigo Munhoz; Suthee Rapisuwon; Pier Federico Gherardini; Bartosz Chmielowski; Xiaoyan Wang; I Peter Shintaku; Cody Wei; Jeffrey A Sosman; Richard W Joseph; Michael A Postow; Matteo S Carlino; Wen-Jen Hwu; Richard A Scolyer; Jane Messina; Alistair J Cochran; Georgina V Long; Antoni Ribas
Journal:  Nature       Date:  2018-01-10       Impact factor: 49.962

10.  TGFβ attenuates tumour response to PD-L1 blockade by contributing to exclusion of T cells.

Authors:  Sanjeev Mariathasan; Shannon J Turley; Dorothee Nickles; Alessandra Castiglioni; Kobe Yuen; Yulei Wang; Edward E Kadel; Hartmut Koeppen; Jillian L Astarita; Rafael Cubas; Suchit Jhunjhunwala; Romain Banchereau; Yagai Yang; Yinghui Guan; Cecile Chalouni; James Ziai; Yasin Şenbabaoğlu; Stephen Santoro; Daniel Sheinson; Jeffrey Hung; Jennifer M Giltnane; Andrew A Pierce; Kathryn Mesh; Steve Lianoglou; Johannes Riegler; Richard A D Carano; Pontus Eriksson; Mattias Höglund; Loan Somarriba; Daniel L Halligan; Michiel S van der Heijden; Yohann Loriot; Jonathan E Rosenberg; Lawrence Fong; Ira Mellman; Daniel S Chen; Marjorie Green; Christina Derleth; Gregg D Fine; Priti S Hegde; Richard Bourgon; Thomas Powles
Journal:  Nature       Date:  2018-02-14       Impact factor: 49.962

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  63 in total

1.  Pan-cancer analysis of tumor mutation burden sensitive tumors reveals tumor-specific subtypes and hub genes related to immune infiltration.

Authors:  Huan Wu; Hanchu Wang; Yue Chen
Journal:  J Cancer Res Clin Oncol       Date:  2022-07-02       Impact factor: 4.553

2.  Clinical and analytical validation of FoundationOne®CDx, a comprehensive genomic profiling assay for solid tumors.

Authors:  Coren A Milbury; James Creeden; Wai-Ki Yip; David L Smith; Varun Pattani; Kristi Maxwell; Bethany Sawchyn; Ole Gjoerup; Wei Meng; Joel Skoletsky; Alvin D Concepcion; Yanhua Tang; Xiaobo Bai; Ninad Dewal; Pei Ma; Shannon T Bailey; James Thornton; Dean C Pavlick; Garrett M Frampton; Daniel Lieber; Jared White; Christine Burns; Christine Vietz
Journal:  PLoS One       Date:  2022-03-16       Impact factor: 3.240

Review 3.  Cancer Epigenomics and Beyond: Advancing the Precision Oncology Paradigm.

Authors:  Daniel Y Lee
Journal:  J Immunother Precis Oncol       Date:  2020-10-07

4.  Estimating tumor mutational burden from RNA-sequencing without a matched-normal sample.

Authors:  Rotem Katzir; Noam Rudberg; Keren Yizhak
Journal:  Nat Commun       Date:  2022-06-02       Impact factor: 17.694

5.  Effect of Systemic or Intraperitoneal Administration of Anti-PD-1 Antibody for Peritoneal Metastases from Gastric Cancer.

Authors:  Yuko Kumagai; Yurie Futoh; Hideyo Miyato; Hideyuki Ohzawa; Hironori Yamaguchi; Shin Saito; Kentaro Kurashina; Yoshinori Hosoya; Alan Kawarai Lefor; Naohiro Sata; Joji Kitayama
Journal:  In Vivo       Date:  2022 May-Jun       Impact factor: 2.406

Review 6.  Enhancing antitumor immunity through checkpoint blockade as a therapeutic strategy in T-cell lymphomas.

Authors:  Alexander Neuwelt; Taha Al-Juhaishi; Eduardo Davila; Bradley Haverkos
Journal:  Blood Adv       Date:  2020-09-08

7.  Correlation analysis of tumor mutation burden of hepatocellular carcinoma based on data mining.

Authors:  Weijie Zhou; Dalang Fang; Yongfei He; Jie Wei
Journal:  J Gastrointest Oncol       Date:  2021-06

8.  Genomic and transcriptional alterations in first-line chemotherapy exert a potentially unfavorable influence on subsequent immunotherapy in NSCLC.

Authors:  Yayi He; Linsong Chen; Lishu Zhao; Shiying Dang; Guifeng Liu; Shinji Sasada; Patrick C Ma; Nico van Zandwijk; Rafael Rosell; Helmut H Popper; Hao Wang; Minlin Jiang; Haoyue Guo; Xinyi Liu; Shifu Chen; Xiaoni Zhang; Mingyan Xu; Bo Zhu; Ming Liu; Caicun Zhou
Journal:  Theranostics       Date:  2021-05-13       Impact factor: 11.556

9.  Influence of low tumor content on tumor mutational burden estimation by whole-exome sequencing and targeted panel sequencing.

Authors:  Wenxin Zhang; Ruixia Wang; Huan Fang; Xiangyuan Ma; Dan Li; Tao Liu; Zhenxi Chen; Ke Wang; Shiguang Hao; Zicheng Yu; Zhili Chang; Chenglong Na; Yin Wang; Jian Bai; Yanyan Zhang; Fang Chen; Miao Li; Chao Chen; Liangshen Wei; Jinghua Li; Xiaoyan Chang; Shoufang Qu; Ling Yang; Jie Huang
Journal:  Clin Transl Med       Date:  2021-05

Review 10.  FDA-Approved and Emerging Next Generation Predictive Biomarkers for Immune Checkpoint Inhibitors in Cancer Patients.

Authors:  Ye Wang; Zhuang Tong; Wenhua Zhang; Weizhen Zhang; Anton Buzdin; Xiaofeng Mu; Qing Yan; Xiaowen Zhao; Hui-Hua Chang; Mark Duhon; Xin Zhou; Gexin Zhao; Hong Chen; Xinmin Li
Journal:  Front Oncol       Date:  2021-06-07       Impact factor: 6.244

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