| Literature DB >> 31572107 |
Xinyuan Zhang1,2,3, Yanqiu Feng1,2, Wufan Chen1,2, Xin Li3, Andreia V Faria3, Qianjin Feng1,2, Susumu Mori3.
Abstract
Linear registration is often the crucial first step for various types of image analysis. Although this is mathematically simple, failure is not uncommon. When investigating the brain by magnetic resonance imaging (MRI), the brain is the target organ for registration but the existence of other tissues, in addition to a variety of fields of view, different brain locations, orientations and anatomical features, poses some serious fundamental challenges. Consequently, a number of different algorithms have been put forward to minimize potential errors. In the present study, we tested a knowledge-based approach that can be combined with any form of registration algorithm. This approach consisted of a library of intermediate images (mediators) with known transformation to the target image. Test images were first registered to all mediators and the best mediator was selected to ensure optimum registration to the target. In order to select the best mediator, we evaluated two similarity criteria: the sum of squared differences and mutual information. This approach was applied to 48 mediators and 96 test images. In order to reduce one of the main drawbacks of the approach, increased computation time, we reduced the size of the library by clustering. Our results indicated clear improvement in registration accuracy.Entities:
Keywords: MNI space; T1-weighted brain image; dice value; linear registration; mediator selection
Year: 2019 PMID: 31572107 PMCID: PMC6750123 DOI: 10.3389/fnins.2019.00909
Source DB: PubMed Journal: Front Neurosci ISSN: 1662-453X Impact factor: 4.677
FIGURE 1Schematic diagram of our knowledge-based registration method.
FIGURE 2Dice coefficients obtained by pairwise direct linear registration between test and template images. (A) Dot plot of the Dice coefficients against 96 test images; (B) Histogram of the Dice coefficients with cumulative percentage.
FIGURE 3Examples of failed and successful pairwise linear registration between test and template images. Top row: template image. Bottom row: registered test images. For visual clues, the brain masks of the registered test images were overlaid onto the template image.
FIGURE 4Dice coefficients obtained by linear registration using two arbitrary mediators for 96 test subjects. (A,B) Mediator #1; (C,D) mediator #17. Cases #29 and #75 are shown by red and green colors, respectively.
FIGURE 5The highest Dice coefficient among the 48 mediators used for each subject. (A) Dot plot of the Dice coefficients against 96 test images; (B) histogram of the Dice coefficients with cumulative percentage.
FIGURE 6Dice coefficients obtained by linear registration with the best mediator, as selected by SSD and MI criteria. (A) Dot plot of the Dice coefficients against 96 test images; (B) histogram of the Dice coefficients with cumulative percentage.
FIGURE 7The effect of mediator reduction on Dice coefficients. (A) Dot plot of the Dice coefficients against 96 test images; (B) histogram of the Dice coefficients with cumulative percentage.