Literature DB >> 31568581

TITAN: A Code for Modeling and Generating Electric Fields-Features and Applications to Enzymatic Reactivity.

Thijs Stuyver1,2, Jing Huang1,3, Dibyendu Mallick1,4, David Danovich1, Sason Shaik1.   

Abstract

We present here a versatile computational code named "elecTric fIeld generaTion And maNipulation (TITAN)," capable of generating various types of external electric fields, as well as quantifying the local (or intrinsic) electric fields present in proteins and other biological systems according to Coulomb's Law. The generated electric fields can be coupled with quantum mechanics (QM), molecular mechanics (MM), QM/MM, and molecular dynamics calculations in most available software packages. The capabilities of the TITAN code are illustrated throughout the text with the help of examples. We end by presenting an application, in which the effects of the local electric field on the hydrogen transfer reaction in cytochrome P450 OleTJE enzyme and the modifications induced by the application of an oriented external electric field are examined. We find that the protein matrix in P450 OleTJE acts as a moderate catalyst and that orienting an external electric field along the Fe─O bond of compound I has the biggest impact on the reaction barrier. The induced catalysis/inhibition correlates with the calculated spin density on the O-atom.
© 2019 Wiley Periodicals, Inc. © 2019 Wiley Periodicals, Inc.

Entities:  

Keywords:  H-abstraction reaction; TITAN code; external electric field; intrinsic electric fields; local electric fields; oriented electric fields

Mesh:

Substances:

Year:  2019        PMID: 31568581     DOI: 10.1002/jcc.26072

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  5 in total

Review 1.  Oriented internal electrostatic fields: an emerging design element in coordination chemistry and catalysis.

Authors:  Alexander B Weberg; Ryan P Murphy; Neil C Tomson
Journal:  Chem Sci       Date:  2022-04-20       Impact factor: 9.969

2.  What Is the Catalytic Mechanism of Enzymatic Histone N-Methyl Arginine Demethylation and Can It Be Influenced by an External Electric Field?

Authors:  Rajeev Ramanan; Sodiq O Waheed; Christopher J Schofield; Christo Z Christov
Journal:  Chemistry       Date:  2021-06-04       Impact factor: 5.020

3.  Solvent Organization and Rate Regulation of a Menshutkin Reaction by Oriented External Electric Fields are Revealed by Combined MD and QM/MM Calculations.

Authors:  Kshatresh Dutta Dubey; Thijs Stuyver; Surajit Kalita; Sason Shaik
Journal:  J Am Chem Soc       Date:  2020-05-19       Impact factor: 15.419

4.  Can Second Coordination Sphere and Long-Range Interactions Modulate Hydrogen Atom Transfer in a Non-Heme Fe(II)-Dependent Histone Demethylase?

Authors:  Shobhit S Chaturvedi; Simahudeen Bathir Jaber Sathik Rifayee; Sodiq O Waheed; Jon Wildey; Cait Warner; Christopher J Schofield; Tatyana G Karabencheva-Christova; Christo Z Christov
Journal:  JACS Au       Date:  2022-08-18

5.  Tipping the balance: theoretical interrogation of divergent extended heterolytic fragmentations.

Authors:  Croix J Laconsay; Ka Yi Tsui; Dean J Tantillo
Journal:  Chem Sci       Date:  2020-01-09       Impact factor: 9.825

  5 in total

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