| Literature DB >> 31564953 |
Laith N Al-Eitan1,2, Islam M Al-Dalalah1, Mohamed M Mustafa3, Mansour A Alghamdi4, Afrah K Elshammari5, Wael H Khreisat5, Mohammed N Al-Quasmi6, Hanan A Aljamal1.
Abstract
BACKGROUND: A total of 50 million persons were diagnosed worldwide with epilepsy. One-third of them are experiencing debilitating seizures despite optimum anti-epileptic drugs (AEDs) treatment. Several studies have suggested that CYP3A5, CHRM2, and ZNF498 influence the pharmacokinetics of AEDs. Therefore, the severity of the disease as well as the degree of response to the AEDs could be affected by the genetic polymorphisms within these genes.Entities:
Keywords: anti-epileptic drugs; cytochrome P-450 CYP3A; epilepsy; humans; pharmacogenetics; seizures
Year: 2019 PMID: 31564953 PMCID: PMC6732506 DOI: 10.2147/PGPM.S212433
Source DB: PubMed Journal: Pharmgenomics Pers Med ISSN: 1178-7066
Gender and age-matched distribution in the epileptic patients (n=296) and the control individuals (n=299)
| Criteria | Controls | Patients | |
|---|---|---|---|
| 5.94±3.7 | 7.1±4.1 | ||
| 152, 50.8% | 162, 54.8% | ||
| 147, 49.2% | 134, 45.2% | ||
The association of CHRM2, CYP3A5, and ZNF498 polymorphisms in epileptic patients (EP) (n=296) and control individuals (n=299)
| Gene | SNP ID | Models | Controls % | EP % | OR (95% CI) | |
|---|---|---|---|---|---|---|
| rs324649 | CC/CT/TT | 37.6/43.2/19.2 | 35.5/45.4/19.1 | 1.0/1.11/1.06 | 0.84 | |
| CC/CT+TT | 37.6/62.4 | 35.5/64.5 | 1.0/1.1 | 0.59 | ||
| CC+CT/TT | 80.8/19.2 | 80.9/19.1 | 1.0/1.0 | 0.99 | ||
| CC+TT/CT | 56.8/43.2 | 54.6/45.4 | 1.0/1.09 | 0.6 | ||
| rs420817 | CC/CT/TT | 26.5/47.6/25.8 | 32/45.9/22.1 | 1.0/0.8/0.71 | 0.29 | |
| CC/CT+TT | 26.5/73.5 | 32/68 | 1.0/0.77 | 0.14 | ||
| CC+CT/TT | 74.2/25.8 | 77.9/22.1 | 1.0/0.81 | 0.29 | ||
| CC+TT/CT | 52.4/47.6 | 54.1/45.9 | 1.0/0.93 | 0.67 | ||
| rs15524 | AA/AG/GG | 80.2/16.4/3.4 | 86.2/12.5/1.4 | 1.0/0.71/0.37 | 0.089 | |
| AA/AG+GG | 80.2/19.8 | 86.2/13.8 | 1.0/0.65 | 0.052 | ||
| AA+AG/GG | 96.6/3.4 | 98.7/1.4 | 1.0/0.39 | 0.1 | ||
| AA+GG/AG | 83.6/16.4 | 87.5/12.5 | 1.0/0.73 | 0.17 | ||
| rs1859690 | AA/AG/GG | 79.9/16.7/3.3 | 86.8/11.8/1.4 | 1.0/0.65/0.37 | 0.051 | |
| AA/AG+GG | 79.9/20.1 | 86.8/13.2 | 1.0/0.6 | 0.024 | ||
| AA+AG/GG | 96.7/3.3 | 98.7/1.4 | 1.0/0.4 | 0.1 | ||
| AA+GG/AG | 83.3/16.7 | 88.2/11.8 | 1.0/0.67 | 0.087 |
Note: *Chi-square test with P-value<0.0125 is considered significant.
The association of CHRM2, CYP3A5, and ZNF498 polymorphisms in generalized epilepsy patients (GEP) (n=172) and control individuals (n=299)
| Gene | SNP ID | Models | Controls % | GEP % | OR (95% CI) | |
|---|---|---|---|---|---|---|
| rs324649 | CC/CT/TT | 37.6/43.2/19.2 | 33.1/46.1/20.7 | 1.0/1.21/1.23 | 0.62 | |
| CC/CT+TT | 37.6/62.4 | 33.1/66.9 | 1.0/1.22 | 0.33 | ||
| CC+CT/TT | 80.8/19.2 | 79.3/20.7 | 1.0/1.10 | 0.69 | ||
| CC+TT/CT | 56.8/43.2 | 53.9/46.1 | 1.0/1.13 | 0.54 | ||
| rs420817 | CC/CT/TT | 26.5/47.6/25.8 | 32.8/48.5/18.7 | 1.0/0.82/0.59 | 0.14 | |
| CC/CT+TT | 26.5/73.5 | 32.8/67.2 | 1.0/0.74 | 0.15 | ||
| CC+CT/TT | 74.2/25.8 | 81.3/18.7 | 0.66/1.0 | 0.08 | ||
| CC+TT/CT | 52.4/47.6 | 51.5/48.5 | 1.0/1.04 | 0.85 | ||
| rs15524 | AA/AG/GG | 80.2/16.4/3.4 | 84.9/14.5/0.6 | 1.0/0.84/0.16 | 0.08 | |
| AA/AG+GG | 80.2/19.8 | 84.9/15.1 | 1.0/0.72 | 0.2 | ||
| AA+AG/GG | 96.6/3.4 | 99.4/0.6 | 1.0/0.17 | 0.034 | ||
| AA+GG/AG | 83.6/16.4 | 85.5/14.5 | 1.0/0.86 | 0.58 | ||
| rs1859690 | AA/AG/GG | 79.9/16.7/3.3 | 86/13.4/0.6 | 1.0/0.74/0.16 | 0.058 | |
| AA/AG+GG | 79.9/20.1 | 86/13.9 | 1.0/0.65 | 0.09 | ||
| AA+AG/GG | 96.7/3.3 | 99.4/0.6 | 1.0/0.17 | 0.034 | ||
| AA+GG/AG | 83.3/16.7 | 86.6/13.4 | 1.0/0.77 | 0.34 |
Note: *Chi-square test with P-value<0.0125 is considered significant.
The association of CHRM2, CYP3A5, and ZNF498 polymorphisms in partial epilepsy patients (PEP) (n=124) and control individuals (n=299)
| Gene | SNP ID | Models | Controls % | PEP % | OR (95% CI) | |
|---|---|---|---|---|---|---|
| rs324649 | CC/CT/TT | 37.6/43.2/19.2 | 38.7/44.4/16.9 | 1.0/1.0/0.86 | 0.87 | |
| CC/CT+TT | 37.6/62.4 | 38.7/61.3 | 1.0/0.96 | 0.84 | ||
| CC+CT/TT | 80.8/19.2 | 83.1/16.9 | 1.0/0.86 | 0.59 | ||
| CC+TT/CT | 56.8/43.2 | 55.6/44.4 | 1.0/1.05 | 0.58 | ||
| rs420817 | CC/CT/TT | 26.5/47.6/25.8 | 30.9/42.3/26.8 | 1.0/0.79/0.89 | 0.56 | |
| CC/CT+TT | 26.5/73.5 | 30.9/69.1 | 1.0/0.81 | 0.36 | ||
| CC+CT/TT | 74.2/25.8 | 73.2/26.8 | 1.0/1.05 | 0.83 | ||
| CC+TT/CT | 52.4/47.6 | 57.7/42.3 | 1.0/0.8 | 0.31 | ||
| rs15524 | AA/AG/GG | 80.2/16.4/3.4 | 87.9/9.7/2.4 | 1.0/0.54/0.66 | 0.14 | |
| AA/AG+GG | 80.2/19.8 | 87.9/12.1 | 1.0/0.56 | 0.51 | ||
| AA+AG/GG | 96.6/3.4 | 97.6/2.4 | 1.0/0.71 | 0.6 | ||
| AA+GG/AG | 83.6/16.4 | 90.3/9.7 | 1.0/0.54 | 0.063 | ||
| rs1859690 | AA/AG/GG | 79.9/16.7/3.3 | 87.9/9.7/2.4 | 1.0/0.53/0.66 | 0.13 | |
| AA/AG+GG | 79.9/20.1 | 87.9/12.1 | 1.0/0.55 | 0.044 | ||
| AA+AG/GG | 96.7/3.3 | 97.6/2.4 | 1.0/0.72 | 0.61 | ||
| AA+GG/AG | 83.3/16.7 | 90.3/9.7 | 1.0/0.53 | 0.054 |
Note: *Chi-square test with P-value<0.0125 is considered significant.
The association of ZNF498, CYPA5, and CHRM2 SNPs in good responder (n=124) and poor responder (n=171) patients
| Gene | SNP ID | Models | Good responder % | Poor responder % | OR (95% CI) | |
|---|---|---|---|---|---|---|
| rs324649 | CC/CT/TT | 53/45/24 | 50/88/32 | 1.0/2.07/1.41 | 0.024 | |
| CC/CT+TT | 53/69 | 50/120 | 1.0/1.84 | 0.014 | ||
| CC+CT/TT | 98/24 | 138/32 | 1.0/0.95 | 0.86 | ||
| CC+TT/CT | 77/45 | 82/88 | 1.0/1.84 | 0.012 | ||
| rs420817 | CC/CT/TT | 41/50/33 | 53/85/31 | 1.0/1.32/0.73 | 0.15 | |
| CC/CT+TT | 41/83 | 53/116 | 1.0/108 | 0.76 | ||
| CC+CT/TT | 91/33 | 138/31 | 1.0/0.62 | 0.092 | ||
| CC+TT/CT | 74/50 | 84/85 | 1.0/1.50 | 0.09 | ||
| rs15524 | AA/GA/GG | 109/14/1 | 145/23/3 | 1.0/1.23/2.26 | 0.65 | |
| AA/GA+GG | 109/15 | 145/26 | 1.0/1.30 | 0.44 | ||
| AA+GA/GG | 123/1 | 168/3 | 1.0/2.20 | 0.47 | ||
| AA+GG/GA | 110/14 | 148/23 | 1.0/1.22 | 0.58 | ||
| rs1859690 | AA/GA/GG | 110/13/1 | 146/22/3 | 1.0/1.28/2.26 | 0.62 | |
| AA/GA+GG | 110/14 | 146/25 | 1.0/1.35 | 0.4 | ||
| AA+GA/GG | 123/1 | 168/3 | 1.0/2.20 | 0.47 | ||
| AA+GG/GA | 111/13 | 149/22 | 1.0/1.26 | 0.53 |
Note: *Chi-square test with P-value <0.0125 is considered significant.
The association between CHRM2 (rs324649 and rs420817), CYP3A5 (rs15524), and ZNF498 (rs1859690) and the clinical characteristics
| Clinical characteristic | ||||
|---|---|---|---|---|
| rs324649 | rs420817 | rs15524 | rs1859690 | |
| CC vs CT vs TT | CC vs CT vs TT | AA vs GA vs GG | AA vs GA vs GG | |
| History of febrile seizure | 0.384 | 0.881 | 0.999 | 0.999 |
| Family history of epilepsy | 0.991 | 0.881 | 0.003 | 0.002 |
| Psychosis | 0.218 | 0.405 | 0.963 | 0.966 |
| Suicidal thoughts or actions | 0.918 | 0.569 | 0.733 | 0.699 |
| Epilepsy syndromes | 0.593 | 0.845 | 0.436 | 0.415 |
| Classification of epilepsy | 0.235 | 0.384 | 0.009 | 0.017 |
| Response to AEDs* | 0.465 | 0.034 | 0.136 | 0.135 |
Notes: *Antiepileptic treatment protocol began with 10 mg/kg of valproic acid (VPA) for patients diagnosed with generalized seizure or 5 mg/kg daily of carbamazepine (CBZ) for patients diagnosed with partial seizure. Chi-square test with P<0.0125 is considered significant.
Figure 1Scatter plot from the sequenom data of the studied variants. The scatter plot illustrates rs159690 SNP within ZNF498 gene (A) rs15524 SNP within CYP3A5 (B) and rs420817 and rs324649 SNPs within CHRM2 (C and D, respectively). The X and Y axes denote mass measurements for the two alleles (G, A, low mass allele versus high mass allele) at the rs159690 and rs15524 (A and B, respectively). At (C) and (D) the X and Y axes denote mass measurements for the C, T (low mass allele versus high mass allele) at rs420817 and rs324649 SNPs. Every single sample is represented by one point. The points in the scatter plot are colored depending on the genotype calls.