Literature DB >> 31562957

Computer-aided drug repurposing for cancer therapy: Approaches and opportunities to challenge anticancer targets.

Carla Mottini1, Francesco Napolitano2, Zhongxiao Li2, Xin Gao3, Luca Cardone4.   

Abstract

Despite huge efforts made in academic and pharmaceutical worldwide research, current anticancer therapies achieve effective treatment in a limited number of neoplasia cases only. Oncology terms such as big killers - to identify tumours with yet a high mortality rate - or undruggable cancer targets, and chemoresistance, represent the current therapeutic debacle of cancer treatments. In addition, metastases, tumour microenvironments, tumour heterogeneity, metabolic adaptations, and immunotherapy resistance are essential features controlling tumour response to therapies, but still, lack effective therapeutics or modulators. In this scenario, where the pharmaceutical productivity and drug efficacy in oncology seem to have reached a plateau, the so-called drug repurposing - i.e. the use of old drugs, already in clinical use, for a different therapeutic indication - is an appealing strategy to improve cancer therapy. Opportunities for drug repurposing are often based on occasional observations or on time-consuming pre-clinical drug screenings that are often not hypothesis-driven. In contrast, in-silico drug repurposing is an emerging, hypothesis-driven approach that takes advantage of the use of big-data. Indeed, the extensive use of -omics technologies, improved data storage, data meaning, machine learning algorithms, and computational modeling all offer unprecedented knowledge of the biological mechanisms of cancers and drugs' modes of action, providing extensive availability for both disease-related data and drugs-related data. This offers the opportunity to generate, with time and cost-effective approaches, computational drug networks to predict, in-silico, the efficacy of approved drugs against relevant cancer targets, as well as to select better responder patients or disease' biomarkers. Here, we will review selected disease-related data together with computational tools to be exploited for the in-silico repurposing of drugs against validated targets in cancer therapies, focusing on the oncogenic signaling pathways activation in cancer. We will discuss how in-silico drug repurposing has the promise to shortly improve our arsenal of anticancer drugs and, likely, overcome certain limitations of modern cancer therapies against old and new therapeutic targets in oncology.
Copyright © 2019 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  Bio-computational tools; Cancer; Drug repurposing; Omics data; Oncogenes; Tumour-suppressor genes

Mesh:

Substances:

Year:  2019        PMID: 31562957     DOI: 10.1016/j.semcancer.2019.09.023

Source DB:  PubMed          Journal:  Semin Cancer Biol        ISSN: 1044-579X            Impact factor:   15.707


  13 in total

Review 1.  Gut microbiome, big data and machine learning to promote precision medicine for cancer.

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2.  Artificial intelligence in clinical research of cancers.

Authors:  Dan Shao; Yinfei Dai; Nianfeng Li; Xuqing Cao; Wei Zhao; Li Cheng; Zhuqing Rong; Lan Huang; Yan Wang; Jing Zhao
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Review 3.  Glioma-Targeted Therapeutics: Computer-Aided Drug Design Prospective.

Authors:  Preantha Poonan; Clement Agoni; Mahmoud A A Ibrahim; Mahmoud E S Soliman
Journal:  Protein J       Date:  2021-09-29       Impact factor: 2.371

Review 4.  Predicting epitopes for vaccine development using bioinformatics tools.

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Journal:  Ther Adv Vaccines Immunother       Date:  2022-05-21

Review 5.  Drug Repurposing in Cancer Therapy: Influence of Patient's Genetic Background in Breast Cancer Treatment.

Authors:  Rafaela Rodrigues; Diana Duarte; Nuno Vale
Journal:  Int J Mol Sci       Date:  2022-04-14       Impact factor: 6.208

6.  Boosting the arsenal against COVID-19 through computational drug repurposing.

Authors:  Gennaro Ciliberto; Luca Cardone
Journal:  Drug Discov Today       Date:  2020-04-15       Impact factor: 7.851

7.  In silico trials: Verification, validation and uncertainty quantification of predictive models used in the regulatory evaluation of biomedical products.

Authors:  Marco Viceconti; Francesco Pappalardo; Blanca Rodriguez; Marc Horner; Jeff Bischoff; Flora Musuamba Tshinanu
Journal:  Methods       Date:  2020-01-25       Impact factor: 3.608

8.  Analysis of Cyclin-Dependent Kinase 1 as an Independent Prognostic Factor for Gastric Cancer Based on Statistical Methods.

Authors:  Xu Zhang; Hua Ma; Quan Zou; Jin Wu
Journal:  Front Cell Dev Biol       Date:  2020-12-07

9.  Targeting the SARS-CoV-2 main protease using FDA-approved Isavuconazonium, a P2-P3 α-ketoamide derivative and Pentagastrin: An in-silico drug discovery approach.

Authors:  Ikechukwu Achilonu; Emmanuel Amarachi Iwuchukwu; Okechinyere Juliet Achilonu; Manuel Antonio Fernandes; Yasien Sayed
Journal:  J Mol Graph Model       Date:  2020-09-02       Impact factor: 2.518

Review 10.  Everything Old Is New Again: Drug Repurposing Approach for Non-Small Cell Lung Cancer Targeting MAPK Signaling Pathway.

Authors:  Anisha S Jain; Ashwini Prasad; Sushma Pradeep; Chandan Dharmashekar; Raghu Ram Achar; Silina Ekaterina; Stupin Victor; Raghavendra G Amachawadi; Shashanka K Prasad; R Pruthvish; Asad Syed; Chandan Shivamallu; Shiva Prasad Kollur
Journal:  Front Oncol       Date:  2021-10-06       Impact factor: 6.244

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