Literature DB >> 31562790

A case for the reuse and adaptation of mechanistic computational models to study transplant immunology.

Miguel Fribourg1.   

Abstract

Computational mechanistic models constitute powerful tools for summarizing our knowledge in quantitative terms, providing mechanistic understanding, and generating new hypotheses. The present review emphasizes the advantages of reusing publicly available computational models as a way to capitalize on existing knowledge, reduce the number of parameters that need to be adjusted to experimental data, and facilitate hypothesis generation. Finally, it includes a step-by-step example of the reuse and adaptation of an existing model of immune responses to tuberculosis, tumor growth, and blood pathogens, to study donor-specific antibody (DSA) responses. This review aims to illustrate the benefit of leveraging the currently available computational models in immunology to accelerate the study of alloimmune responses, and to encourage modelers to share their models to further advance our understanding of transplant immunology.
© 2019 The American Society of Transplantation and the American Society of Transplant Surgeons.

Entities:  

Keywords:  T cell biology; alloantibody; alloantigen; basic (laboratory) research/science; cellular biology; immune regulation; immunobiology; molecular biology; signaling/signaling pathways; translational research/science

Mesh:

Year:  2019        PMID: 31562790      PMCID: PMC6984985          DOI: 10.1111/ajt.15623

Source DB:  PubMed          Journal:  Am J Transplant        ISSN: 1600-6135            Impact factor:   8.086


  37 in total

Review 1.  Systems biology in immunology: a computational modeling perspective.

Authors:  Ronald N Germain; Martin Meier-Schellersheim; Aleksandra Nita-Lazar; Iain D C Fraser
Journal:  Annu Rev Immunol       Date:  2011       Impact factor: 28.527

Review 2.  Data-driven modelling of signal-transduction networks.

Authors:  Kevin A Janes; Michael B Yaffe
Journal:  Nat Rev Mol Cell Biol       Date:  2006-11       Impact factor: 94.444

Review 3.  Standards and ontologies in computational systems biology.

Authors:  Herbert M Sauro; Frank T Bergmann
Journal:  Essays Biochem       Date:  2008       Impact factor: 8.000

4.  Complement Dependence of Murine Costimulatory Blockade-Resistant Cellular Cardiac Allograft Rejection.

Authors:  N Chun; R L Fairchild; Y Li; J Liu; M Zhang; W M Baldwin; P S Heeger
Journal:  Am J Transplant       Date:  2017-05-30       Impact factor: 8.086

Review 5.  Solving Immunology?

Authors:  Yoram Vodovotz; Ashley Xia; Elizabeth L Read; Josep Bassaganya-Riera; David A Hafler; Eduardo Sontag; Jin Wang; John S Tsang; Judy D Day; Steven H Kleinstein; Atul J Butte; Matthew C Altman; Ross Hammond; Stuart C Sealfon
Journal:  Trends Immunol       Date:  2016-12-13       Impact factor: 16.687

Review 6.  New insights into the mechanisms of Treg function.

Authors:  David M Rothstein; Geoffrey Camirand
Journal:  Curr Opin Organ Transplant       Date:  2015-08       Impact factor: 2.640

7.  Single-cell analysis shows that paracrine signaling by first responder cells shapes the interferon-β response to viral infection.

Authors:  Sonali Patil; Miguel Fribourg; Yongchao Ge; Mona Batish; Sanjay Tyagi; Fernand Hayot; Stuart C Sealfon
Journal:  Sci Signal       Date:  2015-02-10       Impact factor: 8.192

8.  A mathematical model for IL-6-mediated, stem cell driven tumor growth and targeted treatment.

Authors:  Fereshteh Nazari; Alexander T Pearson; Jacques Eduardo Nör; Trachette L Jackson
Journal:  PLoS Comput Biol       Date:  2018-01-19       Impact factor: 4.475

9.  Identifying important parameters in the inflammatory process with a mathematical model of immune cell influx and macrophage polarization.

Authors:  Marcella Torres; Jing Wang; Paul J Yannie; Shobha Ghosh; Rebecca A Segal; Angela M Reynolds
Journal:  PLoS Comput Biol       Date:  2019-07-31       Impact factor: 4.475

10.  Introduction of a Framework for Dynamic Knowledge Representation of the Control Structure of Transplant Immunology: Employing the Power of Abstraction with a Solid Organ Transplant Agent-Based Model.

Authors:  Gary An
Journal:  Front Immunol       Date:  2015-11-06       Impact factor: 7.561

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.