| Literature DB >> 31561637 |
Stepan Smetnev1, Marina Klimushina2, Vladimir Kutsenko3, Anna Kiseleva4, Nadezhda Gumanova5, Alexander Kots6, Olga Skirko7, Alexandra Ershova8, Elena Yarovaya9, Victoria Metelskaya10, Alexey Meshkov11,12, Oksana Drapkina13.
Abstract
Adiponectin is encoded by the ADIPOQ gene and participates in the pathogenesis of cardiovascular and metabolic diseases. The goal of the study was to assess associations of rs17300539, rs266729, rs182052, rs2241766, and rs17366743 single nucleotide polymorphisms (SNPs) of the ADIPOQ gene with concentrations of serum adiponectin and with coronary atherosclerosis and type 2 diabetes mellitus in 447 patients (316 men and 131 women) subjected to coronary angiography. SNPs of the ADIPOQ gene of the study participants were genotyped using real-time PCR. Multivariate linear regression adjusted for covariates revealed significant association between rs182052 SNP and serum adiponectin concentration (β= -0.11; 95% confidence interval (95%CI): -0.19, -0.03; p = 0.016). Regression analysis revealed an increase in prevalence of unstable angina (OR (odds ratio) = 2.55; 95%CI 1.4-4.82; p = 0.018) and coronary artery disease (OR = 1.55; 95%CI 1.15-2.09; p = 0.021) per copy of the rs182052 A allele. Prevalence of type 2 diabetes mellitus was higher in subjects with the rs182052 A allele (OR = 2.29; 95%CI 1.29-4.21; p = 0.024). Regression analysis of rs266729 showed that prevalence of unstable angina was increased (OR = 3.59; 95%CI 1.17-10.01; p = 0.045) in the subjects with the GG genotype and prevalence of coronary artery disease (CAD) was significantly increased (OR = 1.48; 95%CI 1.09-2.03; p = 0.045) per copy of the G allele. Haplotype analysis revealed that the subjects with the GCATT haplotype have lower adiponectin levels (β= -0.15; p = 0.042) and higher prevalence of unstable angina (OR = 3.597; p = 0.007) compared with reference haplotype carriers. Thus, the results indicate that minor A allele of rs182052 of the ADIPOQ gene is significantly associated with a decrease in serum adiponectin levels, and two SNPs (rs182052 and rs266729) of the ADIPOQ gene are significantly associated with cardiovascular and metabolic diseases.Entities:
Keywords: ADIPOQ; adiponectin; coronary artery disease; genetic markers; single-nucleotide polymorphisms
Year: 2019 PMID: 31561637 PMCID: PMC6843172 DOI: 10.3390/biom9100537
Source DB: PubMed Journal: Biomolecules ISSN: 2218-273X
Primer and probe sequences for the analysis of single nucleotide polymorphisms (SNPs) of the ADIPOQ gene.
| SNP | Oligonucleotide Primers | Probes | Amplicon Size (bp) |
|---|---|---|---|
| rs17300539 | F: 5-TTGAAGTTGGTGCTGGCATC-3 | (FAM)-CAGGATCTGAGCCGGTTC-(RTQ1) | 193 |
| R: 5-GGAAGCTGCCACCCACTTA-3 | (R6G)-CAAGAACCAGCTCAGATCC-(BHQ2) | ||
| rs266729 | F: 5-GTTGGTGCTGGCATC-3 | (FAM)-CAGATCCTGCCCTTCAAA-(RTQ1) | 127 |
| R: 5-CCTTGGACTTTCTTGGCACG-3 | (R6G)-TGCGCTTCAAAAACAAAACAT-(BHQ2) | ||
| rs182052 | F: 5-CCTCCGTTCTCCCAC-3 | (FAM)-CCATTCTGAATTTTGCCCAGT-(RTQ1) | 145 |
| R: 5-ACCCTTCCACCTTACTGACC-3 | (R6G)-CCATTCTGAATTTTACCCAGTTCG-(BHQ2) | ||
| rs2241766 | F: 5-GGATTCCAGGGCTCAGGATG-3 | (FAM)-TCTGCCCGGTCATGA-(RTQ1) | 139 |
| R: 5-GCCATCCAACCTGTGCAG-3 | (R6G)-TCCTGGTCATGCCCGG-(BHQ2) | ||
| rs17366743 | F:5-GGCAGGAAAGGAGAACC-3 | (FAM)-AGCGGTATACATAGGCACC-(RTQ1) | 180 |
| R: 5-GTACAGCCCAGGAATGTTGC-3 | (R6G)-CTATGTACACCGCTCAGC-(BHQ2) |
F, forward; R, reverse; BHQ2, black hole quencher-2; FAM, 6-carboxyfluorescein; R6G, rhodamine 6G; RTQ1, real-time quencher-1.
Figure 1Verification of genotyping results by Sanger sequencing. (a) rs182052 (G/A); (b) rs266729 (C/G); (c) rs2241766 (T/G); (d) rs17300539 (G/A); (e) rs17366743 (T/C). Arrows on the sequence chromatograms indicate heterozygotes.
General characteristics, biochemical tests, diseases, and medications.
| Parameter | Total Group (N = 447) |
|---|---|
|
| |
| Age, years | 61 ± 9 |
| Weight, kg | 85.2 ± 15.0 |
| Body mass index, kg/m2 | 28.73 (26.22–32.7) |
| Systolic blood pressure, mmHg | 131 ± 16 |
| Diastolic blood pressure, mmHg | 80 ± 9 |
| Heart rate, bpm | 68 (64–74] |
|
| |
| Total cholesterol, mmol/L | 4.98 ± 1.27 |
| LDL cholesterol, mmol/L | 3.15 ± 1.15 |
| HDL cholesterol, mmol/L | 1.00 ± 0.26 |
| Triglycerides, mmol/L | 1.56 (1.14–2.12) |
| Adiponectin, µg/mL | 7.87 (5.64–11.81) |
| Fasting glucose, mmol/L | 5.6 (5.2–6.2) |
| Insulin, µIU/mL | 10.5 (7.4–14.5) |
| HOMA-IR index | 2.66 (1.83–3.99) |
| C-reactive protein, mg/L | 2.7 (1.2–5.9) |
|
| |
| Type 2 diabetes mellitus, % | 17.2 (13.8–21.1) |
| Hypertension, % | 81.4 (77.5–84.9) |
| Unstable angina, % | 4.9 (3.1–7.4) |
| Coronary artery disease, % | 64.0 (59.3–68.4) |
|
| |
| Statins, % | 92.8 (90.0–95.1) |
| Warfarin (anticoagulants), % | 7.4 (5.1–10.2) |
| Clopidogrel (antiplatelet drugs), % | 59.7 (55.0–64.3) |
| Aspirin (antiplatelet drugs), % | 89.9 (86.8–92.6) |
| Angiotensin converting enzyme inhibitors, % | 69.6 (65.1–73.8) |
| Beta-adrenoblockers, % | 87.0 (83.6–90.0) |
| Calcium antagonists, % | 27.7 (23.6–32.1) |
| Diuretics, % | 25.3 (21.3–29.6) |
Continuous parameters that follow normal distribution are shown as the mean ± SD. Continuous parameters that are not normally distributed are shown as the median [25–75 percentile]. Categorical percentage-based parameters are shown as frequency (95% CI). LDL, low density lipoproteins; HDL, high density lipoproteins; HOMA-IR, homeostatic model assessment of insulin resistance.
Characteristics of the genotyped SNPs of the ADIPOQ gene.
| SNP | Location on Chromosome 3 a | Relation | Alleles, M/m | Genotypes, N for MM/Mm/mm | Observed MAF, % | MAF | |
|---|---|---|---|---|---|---|---|
| Mean MAF, % | Maximal MAF EUR, % | ||||||
| rs17300539 | 186841671 | Promoter | G/A | 385/60/2 | 0.07 | 0.05 | 0.07 |
| rs266729 | 186841685 | Promoter | C/G | 240/154/53 | 0.29 | 0.23 | 0.32 |
| rs182052 | 186842993 | Intron 1 | G/A | 177/196/74 | 0.38 | 0.39 | 0.56 |
| rs2241766 | 186853103 | Exon 2 coding synonymous | T/G | 391/54/2 | 0.06 | 0.05 | 0.12 |
| rs17366743 | 186854300 | Exon 3 coding nonsynonymous | T/C | 432/14/1 | 0.02 | 0.02 | 0.04 |
According to GRCh38.p12 (Genome Reference Consortium human build 38 patch release 12). M, major allele; m, minor allele; MAF, minor allele frequency; MAF EUR, European MAF according to the gnomAD genome database, dataset version 2.1.1.
Univariate nonparametric test and multivariate linear regression analysis of associations of the SNPs of the ADIPOQ gene with logarithm of serum concentration of adiponectin.
| SNP (MAF, %) | Univariate Wilcoxon–Mann–Whitney Test | Multivariate Linear Regression Parameters | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Genetic Model | Δ Log (Adiponectin Concentration) | CI 95% |
| Genetic Model | β | 95% CI |
| Adjusted | |
| rs17300539 (7%) | D | 0.11 | −0.03, 0.25 | 0.125 | D | 0.14 | −0.03, 0.31 | 0.103 | 0.199 |
| rs266729 (29%) | R | −0.16 | −0.32, –0.01 | 0.040 a | A | −0.08 | −0.16, 0.01 | 0.079 | 0.193 |
| rs182052 (38%) | D | −0.11 | −0.22, –0.01 | 0.034 a | A | −0.11 | −0.19, -0.03 | 0.006 a | 0.016 a |
| rs2241766 (6%) | D | 0.11 | −0.06, 0.27 | 0.210 | A | 0.07 | −0.1, 0.23 | 0.436 | 0.645 |
| rs17366743 (2%) | R | 0.89 | −0.92, 3.65 | 0.151 | D | 0.05 | −0.25, 0.34 | 0.763 | 0.728 |
a Significant associations at p < 0.05. A, D, and R, additive, dominant, and recessive genetic models, respectively; Δ, Hodges–Lehman estimator; β, regression coefficient; CI, confidence interval.
Univariate nonparametric test and multivariate logistic regression analysis of associations of the SNPs of the ADIPOQ gene with cardiovascular diseases and diabetes.
| Diseases | Univariate Fisher Exact Test | Multivariate Logistic Regression Parameters | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Genetic Model (N for OR) | % in Group with MM/ % in Group with mm | OR | CI 95% |
| Genetic Model | OR | 95% CI |
| Adjusted | |
| rs266729 SNP | ||||||||||
| Unstable angina | R (394/53) | 4.1%/11.3% | 3.02 | 1.04–7.74 | 0.035 a | R | 3.59 | 1.17–10.01 | 0.018 a | 0.045 a |
| Type 2 diabetes | D (240/207) | 14%/21% | 1.59 | 0.97–2.62 | 0.078 | D | 1.59 | 0.93–2.72 | 0.091 | 0.091 |
| Coronary artery disease | R (394/53) | 67%/79% | 2.07 | 1.03–4.48 | 0.033 a | A | 1.48 | 1.09–2.03 | 0.015 a | 0.045 a |
| rs182052 SNP | ||||||||||
| Unstable angina | R (373/74) | 3.8%/10.8% | 3.11 | 1.20–7.56 | 0.017 a | A | 2.55 | 1.4–4.82 | 0.003 a | 0.018 a |
| Type 2 diabetes | D (177/270) | 11%/21% | 2.1 | 1.23–3.71 | 0.007 a | D | 2.29 | 1.29–4.21 | 0.006 a | 0.024 a |
| Coronary artery disease | R (373/74) | 66%/78% | 1.93 | 1.07–3.64 | 0.024 a | A | 1.55 | 1.15–2.09 | 0.004 a | 0.021 a |
a Significant associations at p < 0.05. A, D, and R, additive, dominant, and recessive genetic models, respectively; OR, odds ratio; CI, confidence interval.
Figure 2Linkage disequilibrium of the tested SNPs of the ADIPOQ gene. The values and colors of the cells correspond to the disequilibrium levels estimated according to the r2, % coefficient.
Associations of constructed haplotypes with logarithm of serum adiponectin concentration, unstable angina, type 2 diabetes, and coronary artery disease. Haplotypes were constructed using five sequential SNPs of the ADIPOQ gene in the following order: rs17300539, rs266729, rs182052, rs2241766, and rs17366743. A total of five haplotypes with frequency >5% were analyzed.
| No | Haplotype | Frequency, % | β, Log Adiponectin | OR, Unstable Angina | OR, Type 2 Diabetes | OR, Coronary Artery Disease |
|---|---|---|---|---|---|---|
| 1 | GCGTT a | 48.7 | - | - | - | |
| 2 | GGATT | 27.4 | −0.094 ( | 2.054 ( | 1.268 ( | 1.546 ( |
| 3 | GCATT | 9.8 | −0.15 ( | 3.597 ( | 1.479 ( | 1.337 ( |
| 4 | ACGTT | 6.5 | 0.09 ( | 0.486 ( | 1.164 ( | 1.237 ( |
| 5 | GCGGT | 5.7 | 0.035 ( | 0.54 ( | 1.017 ( | 0.76 ( |
a This haplotype was used as the baseline reference. b p < 0.05. β, regression coefficient of multivariate linear regression; OR, odds ratio.