| Literature DB >> 31551619 |
M Hernández-Restrepo1, J D P Bezerra2, Y P Tan3, N Wiederhold4, P W Crous1,5,5, J Guarro6, J Gené6.
Abstract
Mycoleptodiscus includes plant pathogens, animal opportunists, saprobic and endophytic fungi. The present study presents the first molecular phylogeny and revision of the genus based on four loci, including ITS, LSU, rpb2, and tef1. An extensive collection of Mycoleptodiscus cultures, including ex-type strains from the CBS, IMI, MUCL, BRIP, clinical isolates from the USA, and fresh isolates from Brazil and Spain, was studied morphologically and phylogenetically to resolve their taxonomy. The study showed that Mycoleptodiscus sensu lato is polyphyletic. Phylogenetic analysis places Mycoleptodiscus in Muyocopronales (Dothideomycetes), together with Arxiella, Leptodiscella, Muyocopron, Neocochlearomyces, and Paramycoleptodiscus. Mycoleptodiscus terrestris, the type species, and M. sphaericus are reduced to synonyms, and one new species is introduced, M. suttonii. Mycoleptodiscus atromaculans, M. coloratus, M. freycinetiae, M. geniculatus, M. indicus, M. lateralis (including M. unilateralis and M. variabilis as its synonyms) and M. taiwanensis belong to Muyocopron (Muyocopronales, Dothideomycetes), and M. affinis, and M. lunatus to Omnidemptus (Magnaporthales, Sordariomycetes). Based on phylogenetic analyses we propose Muyocopron alcornii sp. nov., a fungus associated with leaf spots on Epidendrum sp. (Orchidaceae) in Australia, Muyocopron zamiae sp. nov. associated with leaf spots on Zamia (Zamiaceae) in the USA, and Omnidemptus graminis sp. nov. isolated from a grass (Poaceae) in Spain. Furthermore, Neomycoleptodiscus venezuelense gen. & sp. nov. is introduced for a genus similar to Mycoleptodiscus in Muyocopronaceae.Entities:
Keywords: Ascomycota; Dothideomycetes; Muyocopron; Sordariomycetes; fungal pathogen; mycoses; new taxa
Year: 2019 PMID: 31551619 PMCID: PMC6712544 DOI: 10.3767/persoonia.2019.42.08
Source DB: PubMed Journal: Persoonia ISSN: 0031-5850 Impact factor: 11.051
GenBank accession numbers included in the alignments of Dothideomycetes and Sordariomycetes.
| Species | Old names | Strains | Other collections | GenBank accession numbers | References | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| ITS | LSU | |||||||||
| | M151‡ | EU940161 | EU940084 | – | – | – | ||||
| | M152‡ | EU940162 | EU940085 | – | – | – | ||||
| | CBS 138853T | CPC 22951 | NR_137930 | KP004477 | – | |||||
| | CBS 268.65T | MH858565 | MH870201 | – | – | – | ||||
| | CBS 136918 | L113 | KU234100 | KU234100 | – | KU234115 | KU234132 | |||
| | CBS 100822 | – | GU301808 | – | GU371742 | GU349052 | ||||
| | DAOM 231303 | AFTOL-ID 274 | NR_111220 | AY544681 | – | DQ522854 | DQ497606 | |||
| | NTOU 3636‡ | KC692156 | KC692156 | – | – | KC692157 | ||||
| | R68_1‡ | JN942354 | EF175655 | – | – | – | ||||
| | A402_1B‡ | JN942349 | EF175661 | – | – | – | ||||
| | SS2113‡ | – | EF175665 | – | – | – | ||||
| | SS81.02‡ | – | EF175666 | – | – | – | ||||
| | CBS 400.65T | NR_145359 | MH870275 | – | ||||||
| | CBS 144927T | LR025180 | LR025181 | – | – | – | ||||
| | BRIP 43897T | CBS 141314 | – | This study | ||||||
| | MUCL 34983T | BPI GB1369 | – | This study | ||||||
| | MFLUCC 14-1108T | – | KU726965 | – | KY225778 | – | ||||
| | CBS 720.95T | NR_160197 | – | This study | ||||||
| | MFLUCC 14-1103T | – | KU726966 | – | KY225779 | – | ||||
| | MFLUCC 16-1370T | – | KY070274 | – | – | – | ||||
| | CBS 721.95T | – | This study | |||||||
| | CBS 141029T | BRIP 16247, ATCC 200213 | – | This study | ||||||
| IMI 324533T | – | This study | ||||||||
| CBS 719.95T | BRIP 16983, ATCC 96451 | – | This study | |||||||
| CBS 141033 | BRIP 20066 | – | This study | |||||||
| URM 7802 | – | This study | ||||||||
| URM 7801 | – | – | This study | |||||||
| CBS 127677 | UAMH 10746 | – | This study | |||||||
| CBS 145310 | UTHSC DI17-18 | – | This study | |||||||
| CBS 145315 | UTHSC DI 17-23 | – | This study | |||||||
| CBS 145313 | UTHSC DI 17-21 | – | This study | |||||||
| CBS 145309 | UTHSC DI 17-17 | – | This study | |||||||
| CBS 145314 | UTHSC DI 17-22 | – | This study | |||||||
| CBS 145311 | UTHSC DI 17-19 | – | – | This study | ||||||
| CBS 145312 | UTHSC DI 17-20 | – | This study | |||||||
| CBS 145316 | UTHSC DI 17-24 | – | This study | |||||||
| FMR 13797 | – | This study | ||||||||
| | MFLUCC 10-0041 | – | JQ036230 | – | – | – | ||||
| MFLUCC 14-1106T | – | KU726967 | – | KY225780 | – | |||||
| | CBS 203.71T | – | – | This study | ||||||
| | MFLUCC 17-0545 | NR_158860 | MG646946 | – | – | MG646985 | ||||
| | CBS 276.72T | – | This study | |||||||
| CBS 141030 | BRIP 16943, ATCC 200215 | – | – | This study | ||||||
| | CBS 231.53T | – | This study | |||||||
| IMI 159038T | ATCC 18104 | – | This study | |||||||
| | CBS 109410 | KY940790 | EU754178 | – | GU371774 | GU349075 | ||||
| | CBS 100519T | – | This study | |||||||
| | CBS 141320T | CPC 27552 | KX228279 | KX228330 | – | |||||
| | JK 5456A | GU479799 | GU479799 | – | – | GU479860 | ||||
| | CBS 714.68 | AFTOL-ID 934 | AF071345 | DQ678049 | – | DQ677943 | DQ677888 | |||
| | L82‡ | KU234112 | KU234112 | – | KU234125 | – | ||||
| | CBS 116.29 | AFTOL-ID 1300 | – | DQ678058 | – | DQ677953 | DQ677899 | |||
| | ATCC 22848 | JX134666 | DQ341492 | JX134720 | – | JX134692 | ||||
| | CBS 125232T | KM009166 | KM484951 | KM485046 | – | KM009202 | ||||
| | CBS 125863T | R-5-6-1 | FJ752606 | KJ026705 | KJ026706 | – | JN857963 | |||
| | CBS 117.83T | KM484842 | KM484959 | KM485058 | – | – | ||||
| | CBS 141385 | CPC 26033 | KX306501 | KX306571 | KX306636 | – | KX306704 | |||
| CPC 26045 | KX306505 | KX306575 | KX306640 | – | KX306708 | |||||
| | CBS 117849T | JK5528S | KM484852 | KM484968 | KM485068 | – | – | |||
| | M35‡ | JF414843 | JF414892 | JF710437 | – | JF710412 | ||||
| | M48‡ | JF414837 | – | JF710434 | – | JF710416 | ||||
| | M23‡ | JF414834 | JF414846 | JF710432 | – | JF710408 | ||||
| | CBS 252.34 | KM484862 | KM484976 | KM485078 | – | – | ||||
| | MFLUCC 11 0390T | KP744449 | KP744492 | – | – | – | ||||
| | BRIP 17195aT | ATCC 200212, IMI 353435, CBS 141031 | JX134674 | JX134686 | JX134728 | – | JX134700 | |||
| BRIP 17195bT | CBS 141032 | – | – | – | This study | |||||
| | CBS 138107T | FMR 12415 | – | – | This study | |||||
| | CM12m9T | KF689648 | KF689638 | KF689618 | – | KF689628 | ||||
| | BR0029‡ | KM484880 | KM484995 | KM485100 | – | – | ||||
| CR0024‡ | KM484882 | KM484997 | KM485102 | – | – | |||||
| | CBS 609.75T | KM484944 | KM485040 | KM485158 | – | – | ||||
1 New species are in .
2 ATCC: American Type Culture Collection, Virginia, USA; BRIP: Queensland Plant Pathology Herbarium, Brisbane, Australia; CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands; CPC: Culture collection of Pedro Crous, housed at Westerdijk Fungal Biodiversity Institute; DAOM: National Mycological Herbarium, Department of Agriculture, Ottawa, Ontario, Canada; IMI: International Mycological Institute, Kew, UK; MFLUCC: Mae Fah Luang University Culture Collection, Chiang Ria, Thailand; MUCL: Mycothèque de l’Université catholique de Louvain, Louvain-la-Neuve, Belgium; URM: Culture collection Prof. Maria Auxiliadora Cavalcanti, Recife, Brazil; UTHSC: Fungus Testing Laboratory of the University of Texas Health Science Center at San Antonio, USA; ‡ for other codes (A, BR, CR, JK, L, M, NTOU, R, SS) see References. T indicate ex-type strains.
3 ITS: internal transcribed spacers and intervening 5.8S nrDNA; LSU: partial large subunit (28S) of the nrRNA gene operon; rpb1 & rpb2: partial RNA polymerase II largest subunit gene; tef1: partial translation elongation factor 1-alpha gene. Newly generated sequences are in bold.
Fig. 1RAxML phylogram obtained from the combined ITS, LSU, rpb2, and tef1 sequences of Dothideomycetes members. The tree was rooted to Jahnulales. Taxonomic novelties described in this study are shown in bold. RAxML bootstrap support (BS) values ≥ 70 % and Bayesian posterior probability (PP) scores ≥ 0.95 are shown at the nodes. GenBank accession numbers are indicated in Table 1. T indicates ex-type.
Fig. 2RAxML phylogram obtained from the combined ITS, LSU, rpb1, and tef1 sequences of Magnaporthales members. The tree was rooted to Pyricularia grisea. The new species described in this study is shown in bold. RAxML bootstrap support (BS) values ≥ 70 % and Bayesian posterior probability (PP) scores ≥ 0.95 are shown at the nodes and thickened lines represent nodes with BS = 100 % and PP = 1.00. GenBank accession numbers are indicated in Table 1. T indicates ex-type.
Fig. 3Muyocopron alcornii sp. nov. ex-type BRIP 43897. a–d. Conidiogenous cells; e–i. conidia. — Scale bars: a = 50 μm, others = 10 μm, d applies to b–d, i applies to e–i.
Morphological features of Muyocopron, Mycoleptodiscus and Omnidemptus species treated in this paper.
| Species | Strains and/or fungarium materials | Sporodochia (μm) | Conidiogenous cells | Conidia | Appressoria | References | |||
|---|---|---|---|---|---|---|---|---|---|
| Size (μm) | Collarette (μm) | Shape & size (μm) | Septa | Appendages length (μm) | |||||
| BRIP 43879 | 36–89 × 38–60 | 12.5–18×12–18.5 | 3–6×4.5–8 | Lunate, fusiform; 17.5–20×8–9 | 0–1(–2) | Apical and basal 3–5.5 | – | This study | |
| MUCL 34983 | – | 9.5–14.5 diam | 2.5–4×2–7.5 | Broadly falcate or lunate; 15.5–23×6.5–8.5 | 0 | Apical and basal 1–3 | Broadly ellipsoid, outline entire or rarely with 1–2 short broad lobes, 0–1-septate, 10–14×7–10, base 3–4, 1 pore 0.5–1 diam | ||
| CBS 720.95 | 25–165×16–125 | 17–25×13–19(–21) | 3–10×5–8 | Broadly lunate to inaequilateral oval-ellipsoidal; 16–27×8–13(–16) | 0 | Apical 2–8; basal 1–6 | Obovoid to broadly clavate, straight or commonly curved or bent, often uncinate, sometimes curved at > 180°, unlobed, aseptate, 14–19×8–13, base 3–5.5, pore not visible in many appressoria | ||
| CBS 720.95 | – | 17–29×16.5–26 | 3.5–6×4–6 | Broadly lunate; 22–34×8–15 | 0 | Apical 2–7; basal 0–5 | – | This study | |
| IFRD 8995 | 32–55 diam | 9–18×6–12 | 2–2.5×1.5–3 | Broadly falcate to lunate;11–15×4–4.5 | 0 | Apical and basal 2–3 | – | ||
| CBS 721.95 | Up to 125 diam | 10–15 diam | 3–12×3.5–6.5 | Lunate to fusiform or fusoid-ellipsoidal; 14–20×5.5–7.5 | 0 | Apical 4–12.5; basal 1–10 | Irregularly obovoid to clavate, curved, sigmoid, unlobed, 1(–2)-septate, 9.5–15×6–7, base 3–5, 1 pore 1 diam or indistinct | ||
| BRIP 16247 Type | 25–160×20–150 | 9–16 diam | 4–6 diam | Lunate, fusiform; 15–18×6–8 | 0 | Apical (9–)15–24; basal 5–22.5; lateral 12–26 | Obovoid to clavate or irregular, straight to uncinate, outline rather irregular, (0–)1–2-septate, 9–16×7–11, base 2.5–5, 1 pore 1–2 diam | ||
| IMI 324533 Type | 27–45×13–32 | 9–12.5 diam | 3–4.5 diam | Lunate, fusiform; 15–20×6–8 | 0 | Apical 7.5–12.5; basal 5–11; lateral 7–9 | – | ||
| CBS 719.95 Type | 125–370×100–225 | 14–24×9–16 | 4–6.5 diam | Lunate, fusiform; 15–25×5.5–8 | 0 | Apical 3–21; basal 4–15; lateral 11–22 | Obovoid, straight to uncinated, 9–15×7–9, base 3.5–5, pore indistinct | ||
| CBS 719.95 Type | – | 12–16×10–15 | 1–2×3–5 | Lunate, fusiform; 16.5–22×8–9.5 | 0 | Apical and basal 2–17; lateral 9–20 | – | This study | |
| CBS 145315 | – | 12–19×7.5–11 | 3–4.5 diam | Lunate, fusiform; 16.5–21×5.5–7 | 0 | Apical, basal and lateral 8–15.5 | – | This study | |
| IMI 108220 | 200–300 diam | – | – | Lunate, fusiform; 4–10×1.7–3.3 | 0 | One at each end | – | ||
| IMI 108220 | 54–71 diam, 56–135×53–256 | 4.5–10.5 diam | – | Lunate, fusiform; 13.5–14.5×5–6 | 0 | Basal 3 | – | This study | |
| Several isolates | 30–100 diam | 7–13×3.5–7 | Up to 3 long | Lunate, fusiform; 11–18.5×4.5–7.5 | 0 | Apical 1–10; basal 0–6 | – | ||
| MFC-6T720 | – | 6–12×7–14 | – | Broadly falcate 12–21×5.5–7 | 0 | Apical and basal 1–3 | Clavate-obovoid with a broadly rounded apex, straight or slightly curved, (0–)1(–2)-septate, 9.5–13×5–6.5, base 2.5–3.5, pore indistinct | ||
| CBS 203.71 | – | 7.5–14×8.5–12 | 1×2.5–3 | Lunate, fusiform; 16–20×5.5–6.5 | 0 | Apical 2.5–6; basal 0.75–5 | – | This study | |
| ‘ | IMI 196481e | 30–45 diam | 11–17.5×5–11.5 | 3×6 | Cylindrical; 17–19×4–4.5 | 1 | Apical 19–27 | – | |
| ‘ | MFC-1P143 | 85–430 diam | 4–7×3–5 | – | Cylindrical; 17.5–25×4–5 | 1 | Apical and basal 5–8 | Variable in shape, straight or curved, lobed, 7–17×4.5–7, base 2.5–5, 1(–2) pores, 1–1.5, with short dark radial lines surrounding the pore | |
| ‘ | Holotype | 40–85 diam | 5–8.5×3.5–7 | – | Cylindrical; 20–25(–29)×3.5–4 | 0 | Apical and basal, up to 8 | – | |
| BPI 403851 (ILL31238) | 200–800 diam | Evanescent | – | Cylindrical; 20–34.8×4.4–7 | 1 | Apical and basal 8.7–18 | Obovoid to clavate or cylindrical, straight or bent, entire or broadly lobed, 0(–1)-septate, 10–28×6–11, base 3–6, 1(–2) pores, 1.5–2(–2.5) diam, circular or sometimes irregular in shape, with dark radial lines surrounding the pore | ||
| ATCC 18104 Type of | 110–187×86–144 | Obsolete | – | Cylindrical; 28.8–43.2×5–9 | 1(–2) | Apical 0–14 | Clavate to obovoid, straight or curved, entire or incised, 0–1-septate, 10–25×6–11, 1–2 pores, 1.5–2.8 diam, with dark radial lines surrounding the pore | ||
| CBS 100519 | 24–125×17–104 | 5–11×4–6.5 | – | Cylindrical; 18–27×3–5 | 1 | Apical and basal 6.5–13 | – | This study | |
| BRIP 17195b Type | 50–160 diam | 7–12 diam [ampuliform]; 11–22×6–10 [elongated] | 3–4×2–3 | Falcate; 21–30×3–4 | 1–2(–3) | – | Obovoid to clavate with sinuate margin, 7.5–14×5–8.5(–11), base 2–4, pore 1.8–2 diam | ||
| CBS 138107 | – | 10–14 diam | 1×3 | Falcate; 11–23×3–4 | 1 | – | Obovoid to clavate sinuate margin, 10–15×7.5–10, 1 pore | This study | |
| IMI 271703 | 10.5–13×6.5–11 | 3–4.5 diam | 1.5–2 diam | Falcate; 24.5–32×3.5–4.5 | 1 | – | Obovoid, clavate to irregular in shape, entire or sinuate, some lobed, but not deeply incised, 6–15×4.5–8, base 1.5–3.5, 1 pore 0.8–1.5 | ||
* Appressoria description taken from Alcorn (1994).
Fig. 4Muyocopron coloratum ex-type CBS 720.94. a–g. Conidiogenous cells; h–i. appressoria; j–r. conidia. — Scale bars: a = 50 μm, others = 10 μm, r applies to j–r.
Fig. 5Muyocopron laterale CBS 145315 (a, e–h); CBS 145316 (b–d, i–l), CBS 719.95 (m–t). a–d. Conidiogenous cells; e–t. conidia. — Scale bars: = 10 μm, c applies to b, c; t applies to d–t.
Fig. 6Muyocopron sahnii holotype IMI 108220. a. Holotype details; b–c. leaf spot with sporodochia on the substrate; d–g. sporodochia; d–e. top view; f. down view; g. lateral view; h. conidiogenous cell with collarette; i–l. conidia close to sporodochial; m. conidia. — Scale bars: d = 50 μm, others = 10 μm, f applies to e, f, l applies to i–l.
Fig. 7Muyocopron zamiae sp. nov. ex-type CBS 203.71. a. Conidiogenous cells and conidia; b–f. conidia. — Scale bars: = 10 μm, f applies to b–f.
Fig. 8Mycoleptodiscus suttonii sp. nov. holotype CBS H-14851. a. Sporodochia and conidia; b. sporodochia; c. conidia. — Scale bars: a = 50 μm, b–c = 10 μm.
Fig. 9Neomycoleptodiscus venezuelense gen. & sp. nov. ex-type CBS 100519. a–b. Sporodochia and conidiogenous cells; c. conidia. — Scale bars: a = 50 μm, others = 10 μm.
Fig. 10Omnidemptus affinis ex-type CBS 141031. a–d. Conidiogenous cells; e–f. appressoria; g–i. conidia. — Scale bars: a = 50 μm, others = 10 μm, f applies to c–f, i applies to g–i.
Fig. 11Omnidemptus graminis sp. nov., holotype CBS H-21887. a. Conidiogenous cells and appressoria in natural substrate; b–f. conidiogenous cells; g–h. appressoria; i–k. conidia. — Scale bars: a = 50 μm, others = 10 μm, f applies to c–f.