| Literature DB >> 31551618 |
K Hansen1, T Schumacher2, I Skrede2, S Huhtinen3, X-H Wang1,4.
Abstract
The Helvellaceae encompasses taxa that produce some of the most elaborate apothecial forms, as well as hypogeous ascomata, in the class Pezizomycetes (Ascomycota). While the circumscription of the Helvellaceae is clarified, evolutionary relationships and generic limits within the family are debatable. A robust phylogeny of the Helvellaceae, using an increased number of molecular characters from the LSU rDNA, RPB2 and EF-1α gene regions (4 299 bp) and a wide representative sampling, is presented here. Helvella s.lat. was shown to be polyphyletic, because Helvella aestivalis formed a distant monophyletic group with hypogeous species of Balsamia and Barssia. All other species of Helvella formed a large group with the enigmatic Pindara (/Helvella) terrestris nested within it. The ear-shaped Wynnella constitutes an independent lineage and is recognised with the earlier name Midotis. The clade of the hypogeous Balsamia and Barssia, and H. aestivalis is coherent in the three-gene phylogeny, and considering the lack of phenotypic characters to distinguish Barssia from Balsamia we combine species of Barssia, along with H. aestivalis, in Balsamia. The closed/tuberiform, sparassoid H. astieri is shown to be a synonym of H. lactea; it is merely an incidental folded form of the saddle-shaped H. lactea. Pindara is a sister group to a restricted Helvella, i.e., excluding the /leucomelaena lineage, on a notably long branch. We recognise Pindara as a separate genus and erect a new genus Dissingia for the /leucomelaena lineage, viz. H. confusa, H. crassitunicata, H. leucomelaena and H. oblongispora. Dissingia is supported by asci that arise from simple septa; all other species of Helvellaceae have asci that arise from croziers, with one exception being the /alpina-corium lineage of Helvella s.str. This suggests ascus development from croziers is the ancestral state for the Helvellaceae and that ascus development from simple septa has evolved at least twice in the family. Our phylogeny does not determine the evolutionary relationships within Helvella s.str., but it is most parsimonious to infer that the ancestor of the helvelloids produced subsessile or shortly stipitate, cup-shaped apothecia. This shape has been maintained in some lineages of Helvella s.str. The type species of Underwoodia, Underwoodia columnaris, is a sister lineage to the rest of the Helvellaceae.Entities:
Keywords: Balsamia; Barssia; Helvella aestivalis; Midotis; Pezizomycetes; ascus croziers
Year: 2019 PMID: 31551618 PMCID: PMC6712539 DOI: 10.3767/persoonia.2019.42.07
Source DB: PubMed Journal: Persoonia ISSN: 0031-5850 Impact factor: 11.051
Collections used in the molecular phylogenetic study, with voucher information and GenBank accession numbers. For type specimens (in bold) the original names are kept regardless of synonymy. Numbers in parentheses following species names indicate multiple collections of a single species. Sequences generated in this study are in bold.
| Species | Collection no. (Herb.) or Herb./Culture coll. no. | Geographical origin, Year and Collector | GenBank accession no. | |||
|---|---|---|---|---|---|---|
| hsp | LSU | |||||
| KH.10.117 (S) | Sweden, Lycksele Lappmark, 2010, K. Hansen, I. Olariaga & K. Gillen | − | − | |||
| KH.10.133 (S) | Sweden, Lycksele Lappmark, 2010, K. Hansen, K. Gillen & I. Olariaga | − | ||||
| O-253217 | Norway, Oppland, 2009, T. Carlsen, I. Skrede & T. Schumacher | KY784200 | − | |||
| JMT 13020 (OSC) | USA, CA, 1993, M. Castellano | − | U42683 | − | − | |
| AH44099; paratype | Morocco, 2014, J.L. Manjón, J. Álvarez-Jiménez & M.Á. Sanz | − | KM243654 | − | − | |
| Trappe 19921 (OSC) | USA, CA, 1997, L. Criley | − | EU669425 | − | − | |
| OSC 100014 | USA | − | AY544652 | − | − | |
| TUR206101 | Finland, Varsinais-Suomi, 2016, K. Ruokolainen with Lagotto Romagnolo | − | ||||
| AH44225 | Italy, 1999, A. Montecchi | − | KM243656 | − | − | |
| SRC868 | USA, 2005, M.E. Smith | − | JQ925659 | GU596459 | JQ954469 | |
| AH44222 | Italy, 2005, A. Montecchi | − | KM243651 | − | − | |
| − | Genome | Genome | Genome | |||
| JT31575 | Australia, 2006, J. Trappe | − | JQ925661 | − | JQ954473 | |
| O-253269 | Norway, Oppland, 2007, T. Schumacher & T. Vrålstad | − | ||||
| O-253268 | Norway, Buskerud, 2014, K. Sæbø | − | ||||
| KH.12.75 (S) | Sweden, Jämtland, 2012, K. Hansen & X.H. Wang | − | ||||
| O-253286 | Canada, British Columbia, 1994, T. Schumacher | − | ||||
| KH.06.01 (FH) | USA, MA, 2006, G. Lewis-Gentry & K. Hansen | − | KC012682 | KC109207 | JX943751 | |
| DMS-9190862 (S) | Denmark, Møn, 2017, T. Læssøe | |||||
| O-166316 | Norway, Oppland, 2004, T. E. Brandrud & E. Bendiksen | − | ||||
| OSC 130601 | Australia, 1996, S. Bobbin | − | JQ925663 | JX022555 | JQ954529 | |
| C-F-81792 | Denmark, Lolland, 2006, M. Sasa | − | ||||
| KH.14.01 (S) | Sweden, Södermanland, 2014, S. Kyrk | − | ||||
| KH.12.69 (S) | Sweden, Åsele lappmark, 2012, K. Hansen & X.H. Wang | |||||
| France, Var, 1972, J. Astier & J.-C. Donadini | − | − | ||||
| KH.10.97 (S) | Sweden, Lycksele Lappmark, 2010, K. Hansen, K. Gillen & I. Olariaga | KC122771 | ||||
| O-253261 | Norway, Oppland, Dovre, 2009, T. Carlsen, I. Skrede & T. Schumacher | − | ||||
| KH.10.277 (S) | Sweden, Gotland, 2010, K. Hansen, I. Olariaga & K. Gillen | |||||
| OSC 100019 (as | USA, OR, 2003, K. Hosaka | − | AY544655 | DQ497604 | DQ497613 | |
| PTR 763 (UC 1999259) (as | USA, CA, 2012, I. Singleton | |||||
| O-253279 | Norway, Hordaland, 2014, T. Schumacher | − | ||||
| O-68514 | Norway, Akershus, 2007, P.A. Bergersen | − | ||||
| KH.09.186 (S) | Sweden, Gotland, 2009, E.B. Jensen, K. Hansen & I. Olariaga | |||||
| MES218 (UC 1999238) | USA, CA, 2008, M.E. Smith | − | JQ925665 | GU596456 | JQ954477 | |
| KH.10.94 (S) | Sweden, Lycksele Lappmark, 2010, K. Hansen, I. Olariaga & K. Gillen | |||||
| O-253320 | Norway, Oppland, 2009, T. Carlsen, I. Skrede & T. Schumacher | − | − | |||
| O-292075 | Norway, Akershus, 2009, C. Christiansen | − | ||||
| KH.09.142 (S) | Norway, Nord-Trøndelag, 2009, K.M. Jenssen | |||||
| KH.12.05 (S) | Sweden, Lycksele Lappmark, 2012, K. Hansen & X.H. Wang | |||||
| KH.03.21 (FH) | Norway, Nordland, 2003, K. Hansen & C. Lange | DQ191678 | KC109208 | JX943752 | ||
| O-253375 | Norway, Oppland, 2009, T. Carlsen, I. Skrede & T. Schumacher | − | ||||
| KH.11.84 (S) | Sweden, Gotland, 2011, H. Knudsen & M. Sasa | |||||
| KH.10.286 (S) | Sweden, Gotland, 2010, K. Hansen, K. Gillen & I. Olariaga | − | ||||
| JT27750 | Australia | − | JQ925670 | − | JQ954480 | |
| S. Huhtinen 82/98 (TUR 078781) | Canada, Quebec, 1982, S. Huhtinen | − | − | |||
| Sch 84.51 (C-F-57385) | Switzerland, Graubünden, 1984, H. Dissing | KY784396 | ||||
| KH.12.67 (S) | Sweden, Jämtland, 2012, X.H. Wang & K. Hansen | − | ||||
| S-F327988 (dupl. UME) | Sweden, Västerbotten, 2011, N. & Z. Lipovac | − | ||||
| Finland, Perä-Pohjanmaa, 2011, T. Kekki | − | |||||
| Tbo3840 (University of Bologna Herb.) | Unknown geographic location | − | Genome | Genome | Genome | |
| NESQ01000000 | NESQ01000000 | NESQ01000000 | ||||
| INRA-Clermont-Ferrand Tuber Collection | France, Bouche-du-Rhône, 1988, L. Riousset | − | Genome | Genome | Genome | |
| strain Mel28 | NZ_CABJ00000000 | NZ_CABJ00000000 | NZ_CABJ00000000 | |||
| JT28380 | Australia | − | JQ925716 | JX022613 | JQ954528 | |
| Kanouse1951 | USA, MI | − | U42685 | − | − | |
| MES161 | Chile | − | JQ925718 | JX022615 | JQ954475 | |
| Tribel, Microfungi exs. 83 (UPS F-005952) | Germany, Bayern, 1993, A. Pillukat | − | − | |||
| KUN-HKAS 94928 | China, Sichuan, 2015, S.H. Li | − | ||||
1 Herbaria are cited according to acronyms in Index Herbariorum (http://sweetgum.nybg.org/ih/).
2 hsp: heat shock protein 90 (hsp); LSU: 28S large subunit of the nrRNA gene; EF-1α: Translation elongation factor 1-alpha; RPB2: RNA polymerase II second largest subunit.
Genomes generated by: 3 Murat et al. 2018b, 4 Murat et al. 2018a, 5 Martin et al. 2010.
6 It became apparent from our analyses that the RPB2 sequences of G. australiana and U. cf. singeri in GenBank are switched, and therefore JQ954475 (as G. australiana in GenBank) is here used for U. cf. singeri and JQ954529 (as U. cf. singeri in GenBank) is used for G. australiana.
Newly designed internal primers of RPB2 and EF-1α in this study for PCR and sequencing, and unpublished EF-1α primers (in bold by S. Rehner pers. comm.).
| Locus | Primer | Sequences (5’- 3’) | Direction | Counterpart primer |
|---|---|---|---|---|
| RPB2-Hel6Fa | TGGGGATTRGTCTGCCCYGC | forward | fRPB2-7cR | |
| RPB2-Hel6Fb | TGGGGWTTRGTYTGYCCBGC | forward | fRPB2-7cR | |
| RPB2-Hel6Fc | GTYTGYCCBGCHGARACNCCVGA | forward | fRPB2-7cR | |
| RPB2-Hel1R | CCRATRGTGATRTAAGACATCA | reverse | fRPB2-5F | |
| RPB2-Hel2R | ACRATCATRACRCCTTCCTC | reverse | RPB2-6F | |
| RPB2-Hel3F | AAGTTYGGTTGGGAAGGYYTGYT | forward | fRPB2-7cR | |
| RPB2-Hel4R | AATTTRTCTCCAATYTGDGGAA | reverse | RPB2-P7Fa | |
| RPB2-Hel5F | ACTAAYGCYGAGGGYTTRAA | forward | fRPB2-11aR | |
| forward | 1567R, EF1-Hel3R | |||
| reverse | 526F | |||
| forward | EF1-Hel6R, 2218R | |||
| EF1-Hel1F | CGTGGTATCACYATCGACATYGC | forward | 1567R, EF1-Hel3R | |
| EF1-Hel2R | CCVGCYTCGAACTCACCAGTC | reverse | 526F | |
| EF1-Hel3R | GRACCGTTCCAATACCRCC | reverse | 983F, EF1-Hel1F | |
| EF1-Hel4F | CAAGATYGGYGGTATTGGAACGG | forward | EF1-Hel6R, 2218R | |
| EF1-Hel5F | GCCCAGGTKATTYTYATGAACC | forward | 2218R | |
| EF1-Hel6R | GCRAACTTGCAVGCAATRTG | reverse | EF1-Hel4F |
Fig. 1EF-1α and RPB2 primers used in this study, with their positions shown by arrows on a schematic map of the gene region. Newly designed primers are in bold blue (see Table 2). Other primers are given in Hansen et al. (2013), or by S. Rehner (pers. comm.) for EF-1α and for RPB2 in Liu et al. (1999).
Fig. 2Maximum likelihood phylogeny of Helvellaceae; the single best tree produced from RAxML analysis of the combined LSU rDNA, RPB2 and EF-1α loci (4 299 bp). Tuber melanosporum was used as outgroup in analyses. The tree was rooted on the branch leading to Helvellaceae. Thick black branches received Bayesian posterior probabilities (PP) ≥ 0.95 and maximum likelihood bootstrap (ML-BP) ≥ 75 %. Thick grey branches received support by either PP ≥ 0.95 or ML-BP ≥ 75 %; other values are ML-BP above nodes and PP below. Support values for Dissingia (the /leucomelaena lineage) in analyses excluding U. columnaris are shown in a circle (MP-BP and PP). Taxa of Helvella s.lat. that are recognized to belong to separate distinct clades/taxa are highlighted in red. Five labelled nodes (A–E) refer to those discussed in Skrede et al. (2017).
Fig. 3Balsamia. a. Balsamia aestivalis apothecia; b. Balsamia platyspora ascomata; c–h. Balsamia aestivalis: c. ascospores; d–e. ascus base showing crozier (in CR); f. asci and paraphyses with reddish brown content; g. medullary excipulum of textura intricata (in KOH); h. outer excipulum of textura angularis, outermost cells elongated, forming short, hyphoid, fasciculate hairs with evenly brown content (in KOH); i. outermost hyphoid hairs (in water), end cell slightly club-shaped with a thin gelatinous or amorphous sheath (a, c–f: KH.10.133; b: TUR206101; g–i: KH.10.117). — Scale bars: c–f, i = 10 μm, g–h = 20 μm; a–c, f living material; d–e, g–i from dried material. — Photos: a, c–i K. Hansen; b S. Huhtinen.
Fig. 4Diversity of apothecial shapes and colours in Dissingia and Helvella s.str. a–e. Cup-shaped apothecia, subsessile to distinctly stipitate, ± blunt ribs gradually widening and branching toward the cup-attachment: a. D. leucomelaena (DMS-9190862); b. D. confusa (KH.12.75); c. H. alpina (KH.12.69); d. H. macropus (KH.09.142); e. H. corium (KH.09.25); f–g. cup-shaped apothecia with ribs extending onto the receptacle surface, but not reaching the margin, H. acetabulum (TL-12536, C); h–i. saddle shaped forms in Helvella s.str. with free margin in: h. H. carnosa (KH.10.277); or margin attached to the stipe: i. H. atra (KH.10.97). — All living material. — Photos: a, f–g T. Læssøe; b–e, h–i K. Hansen.
Fig. 5Dissingia and Helvella s.str. a–d, g. Microscopic characters shared by the two genera; e–f. distinguishing ascus features. a. Asci and paraphyses, H. capucina (KH.10.135, S); b–d. spores: b. H. macropus (KH.10.192, S); c. H. fibrosa (KH.10.132, S); d. H. levis (KH.10.185, S); e. asci developing from simple septa (at arrows), D. confusa (KH.12.75); f. ascus base showing small hook from croziers, H. carnosa (KH.10.277); g. outer excipulum of elongated cells forming hyphoid, fasciculate hairs, D. confusa (KH.12.75). — Scale bars: a–f = 10 μm, g = 20 μm; a–d living material; e–g from dried material. — Photos: all K. Hansen.
Fig. 6Midotis. a, b. Apothecia; c. part of medullary excipulum of textura intricata and outer excipulum of pigmented long angular cells placed in a palisade, outermost cell club-shaped; d. close-up of outer excipulum cells; e. asci showing two-pronged remnants from croziers formation (in CR); f. close-up of the thick-walled interwoven hyphae of the medullary excipulum (in KOH) (a: Midotis lingua PRC 3971; b: Wynnella subalpina KUN-HKAS 94928; c, e: Midotis lingua S. Huhtinen 82/98; d, f: Wynnella subalpina UPS F-005952). — Scale bars: d–f = 10 μm; c = 20 μm; a, b living material; c–f from dried material. — Photos: a O. Koukol; b S.H. Li; c–f K. Hansen.
Fig. 7Pindara terrestris. a–c. apothecia; d. asci with bi-seriate spores; e. paraphyses apices with brownish to greyish brown content and surrounded by a greyish amorphous substance; f. hooked ascus base from crozier formation (in CR); g. subhymenium, medullary and outer excipulum; h. outer excipulum cells in rows forming pustule; i. fusoid spores, with single guttule formed by coalescence of multiple smaller guttules (a, d–e, g–i : S-F327988; b: KH.12.67, S; c, f: TUR196043). — Scale bars: f, h–i = 10 μm; d–e, g = 20 μm; a–c living material; d–i from dried material. — Photos: a N. & Z. Lipovac; b, d–g K. Hansen; c T. Kekki.