Literature DB >> 31548717

Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems.

Paul D Thomas1, David P Hill2, Huaiyu Mi3, David Osumi-Sutherland4, Kimberly Van Auken5, Seth Carbon6, James P Balhoff7, Laurent-Philippe Albou3, Benjamin Good6, Pascale Gaudet8, Suzanna E Lewis6, Christopher J Mungall6.   

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Year:  2019        PMID： 31548717      PMCID： PMC7012280          DOI： 10.1038/s41588-019-0500-1

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


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  1 in total

1.  Cytoscape.js: a graph theory library for visualisation and analysis.

Authors:  Max Franz; Christian T Lopes; Gerardo Huck; Yue Dong; Onur Sumer; Gary D Bader
Journal:  Bioinformatics       Date:  2015-09-28       Impact factor: 6.937
  1 in total
  31 in total

1.  Leveraging the Comparative Toxicogenomics Database to Fill in Knowledge Gaps for Environmental Health: A Test Case for Air Pollution-induced Cardiovascular Disease.

Authors:  Allan Peter Davis; Thomas C Wiegers; Cynthia J Grondin; Robin J Johnson; Daniela Sciaky; Jolene Wiegers; Carolyn J Mattingly
Journal:  Toxicol Sci       Date:  2020-10-01       Impact factor: 4.849

2.  Knowledge-Based Biomedical Data Science.

Authors:  Tiffany J Callahan; Ignacio J Tripodi; Harrison Pielke-Lombardo; Lawrence E Hunter
Journal:  Annu Rev Biomed Data Sci       Date:  2020-04-07

3.  A structural homology approach to identify potential cross-reactive antibody responses following SARS-CoV-2 infection.

Authors:  Joseph R McGill; H A Daniel Lagassé; Nancy Hernandez; Louis Hopkins; Wojciech Jankowski; Quinn McCormick; Vijaya Simhadri; Basil Golding; Zuben E Sauna
Journal:  Sci Rep       Date:  2022-07-06       Impact factor: 4.996

4.  Exploring automatic inconsistency detection for literature-based gene ontology annotation.

Authors:  Jiyu Chen; Benjamin Goudey; Justin Zobel; Nicholas Geard; Karin Verspoor
Journal:  Bioinformatics       Date:  2022-06-24       Impact factor: 6.931

5.  Making biological knowledge useful for humans and machines.

Authors:  Valerie Wood; Paul W Sternberg; Howard D Lipshitz
Journal:  Genetics       Date:  2022-04-04       Impact factor: 4.402

6.  Automated generation of gene summaries at the Alliance of Genome Resources.

Authors:  Ranjana Kishore; Valerio Arnaboldi; Ceri E Van Slyke; Juancarlos Chan; Robert S Nash; Jose M Urbano; Mary E Dolan; Stacia R Engel; Mary Shimoyama; Paul W Sternberg; The Alliance Of Genome Resources
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

7.  The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling.

Authors:  Vasundra Touré; Åsmund Flobak; Anna Niarakis; Steven Vercruysse; Martin Kuiper
Journal:  Brief Bioinform       Date:  2021-07-20       Impact factor: 11.622

Review 8.  Modelling kidney disease using ontology: insights from the Kidney Precision Medicine Project.

Authors:  Edison Ong; Lucy L Wang; Jennifer Schaub; John F O'Toole; Becky Steck; Avi Z Rosenberg; Frederick Dowd; Jens Hansen; Laura Barisoni; Sanjay Jain; Ian H de Boer; M Todd Valerius; Sushrut S Waikar; Christopher Park; Dana C Crawford; Theodore Alexandrov; Christopher R Anderton; Christian Stoeckert; Chunhua Weng; Alexander D Diehl; Christopher J Mungall; Melissa Haendel; Peter N Robinson; Jonathan Himmelfarb; Ravi Iyengar; Matthias Kretzler; Sean Mooney; Yongqun He
Journal:  Nat Rev Nephrol       Date:  2020-09-16       Impact factor: 28.314

9.  Using Reactome to build an autophagy mechanism knowledgebase.

Authors:  Thawfeek Mohamed Varusai; Steven Jupe; Cristoffer Sevilla; Lisa Matthews; Marc Gillespie; Lincoln Stein; Guanming Wu; Peter D'Eustachio; Emmanouil Metzakopian; Henning Hermjakob
Journal:  Autophagy       Date:  2020-06-02       Impact factor: 16.016

10.  Fission stories: using PomBase to understand Schizosaccharomyces pombe biology.

Authors:  Midori A Harris; Kim M Rutherford; Jacqueline Hayles; Antonia Lock; Jürg Bähler; Stephen G Oliver; Juan Mata; Valerie Wood
Journal:  Genetics       Date:  2022-04-04       Impact factor: 4.402
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