Literature DB >> 31547354

Large-Scale Production of Bioactive Terrein by Aspergillus terreus Strain S020 Isolated from the Saudi Coast of the Red Sea.

Hani Z Asfour1, Zuhier A Awan2, Alaa A Bagalagel3, Mahmoud A Elfaky4, Reda F A Abdelhameed5, Sameh S Elhady6,7.   

Abstract

The diversity of symbiotic fungi derived from two marine sponges and sediment collected off Obhur, Jeddah (Saudi Arabia), was investigated in the current study. A total of 23 isolates were purified using a culture-dependent approach. Using the morphological properties combined with internal transcribed spacer-rDNA (ITS-rDNA) sequences, 23 fungal strains (in the majority Penicillium and Aspergillus) were identified from these samples. The biological screening (cytotoxic and antimicrobial activities) of small-scale cultures of these fungi yielded several target fungal strains which produced bioactive secondary metabolites. Amongst these isolates, the crude extract of Aspergillus terreus strain S020, which was cultured in fermentation static broth, 21 L, for 40 days at room temperature on potato dextrose broth, displayed strong antimicrobial activities against Pseudomonas aeruginosa and Staphylococcus aureus and significant antiproliferative effects on human carcinoma cells. Chromatographic separation of the crude extract by silica gel column chromatography indicated that the S020 isolate could produce a series of chemical compounds. Among these, pure crystalline terrein was separated with a high yield of 537.26 ± 23.42 g/kg extract, which represents the highest fermentation production of terrein to date. Its chemical structure was elucidated on the basis of high-resolution electrospray ionization mass spectrometry (HRESIMS) or high-resolution mass spectrometry (HRMS), 1D, and 2D NMR spectroscopic analyses and by comparison with reported data. The compound showed strong cytotoxic activity against colorectal carcinoma cells (HCT-116) and hepatocellular carcinoma cells (HepG2), with IC50 values of 12.13 and 22.53 µM, respectively. Our study highlights the potential of A. terreus strain S020 for the industrial production of bioactive terrein on a large scale and the importance of future investigations of these strains to identify the bioactive leads in these fungal extracts.

Entities:  

Keywords:  Aspergillus terreus; Red Sea; antimicrobial; cytotoxic; deep sediment; phylogenetic diversity; sponges; terrein

Year:  2019        PMID: 31547354      PMCID: PMC6769563          DOI: 10.3390/biom9090480

Source DB:  PubMed          Journal:  Biomolecules        ISSN: 2218-273X


1. Introduction

The marine habitat is an attractive source of both biological and chemical diversity. It has been reported that oceans contain nearly 291,000 described species, representing only a small number of the total species that have yet to be discovered [1,2,3]. Almost all macro-organisms in marine habitats, e.g., sediment, fish, algae, sponges, corals, ascidians, have been investigated for their content of natural product entities [4,5]. A bioactive compound with unique structures has been isolated and was shown to possess novel anti-inflammatory, antitumor, and antimicrobial properties [6,7,8,9,10,11,12,13,14]. As interests have turned to marine symbionts, fungi have now begun to be recognized as a likely source of bioactive natural products after having received little attention from natural products chemists [15]. Recently, marine-associated fungi have proved to be a gorgeous source of pharmacologically active natural compounds [14,16,17,18,19,20,21,22,23,24,25,26,27]. Most of these micro-organisms grow in a unique, extreme, and stressful environment; therefore, they have the ability to yield unusual and unique secondary metabolites [15]. Fungi belonging to the Aspergillus genus are one of the major contributors to the secondary metabolites of fungal origin [14]. Marine-derived isolates of Aspergillus terreus are well known for the production of structurally diverse and biologically active natural products [28,29]. Terrein, a fungal metabolite isolated from A. terreus, has been proven to perform diverse biological activities [30,31,32,33,34,35]. Although terrein has application value in the fields of medicine, cosmetology, and agriculture, large-scale production of pure (+)-terrein cannot be achieved easily. The production of terrein by chemical synthesis is difficult due to its stereoselectivity [36,37,38,39] and high-cost chemical reagents [40,41]. In this study, we aimed to use fungal fermentation as a method of low-cost production of terrein in high yield. To our knowledge, the present study describes the highest fermentation production of terrein to date [29,42,43,44,45,46,47,48,49]. The static culture broth and mycelia of A. terreus S020 fungus were extracted, and the combined extracts were partitioned by silica gel column chromatography. The pure compound terrein was finally purified using a C18 semi-preparative HPLC column. As part of our ongoing study to isolate and identify compounds from a marine host [50,51,52,53,54], we cultured and identified fungi from a marine source, assessed bioactive activity against Pseudomona aeruginosa ATCC27853, Bacillus subtilis ATCC6633, Staphylococcus aureus, ATCC25923 and Candida albicansATCC76615, and cytotoxic effects on breast adenocarcinoma (MCF-7), hepatocellular carcinoma (HepG2), and colorectal carcinoma (HCT-116) cells, using crude extracts of the cultured fungal isolates. Further separation, structure determination, and bioactive assessment of the yielded metabolites of selected target strains were performed. A compound, terrein, was separated and purified from the static culture broth of A. terreus strain S020 (Figures S1 and S2). Its chemical structure was elucidated on the basis of HRMS, 1D, and 2D NMR spectroscopic analysie and by comparison with reported data. The isolated compound was tested for its antiproliferative activity.

2. Experimental Section

2.1. Biological Materials

The deep-sea sediment and the marine sponge specimens used in this study were collected from the Red Sea at Obhur, Jeddah, Saudi Arabia, in January 2016 by SCUBA diving at depths of 17 and 27 m. After collection, the materials were kept at −25 °C until investigation.

2.2. Fungi Isolation

2.2.1. Sponge Samples

Surface sterilization of the sponge samples was performed. The sponge samples were disinfected with 5% sodium hypochlorite, followed by 70% ethanol [55]. The inner tissues of sponge materials were cut into pieces of approximately 2 cm3 and homogenized aseptically with sterile, artificial seawater. Three dilutions (1:10, 1:100, and 1:1000) of the resulting homogenate were made with sterile seawater.

2.2.2. Sediment Samples

The deep-sea sediment sample was homogenized aseptically with 15 mL of sterile water, and the resulting solution was diluted by a serial dilution method. For fungal cultivation, 90 μL of each diluted homogenate was transferred onto plates of each of the following media in triplicate (HiMedia Laboratories, Mumbai, India): Czapek–Dox yeast agar medium (CYE), malt agar medium (ME), and Sabouraud dextrose agar medium (SD). All media were supplemented with an antibiotic (0.25% chloramphenicol) and 2% NaCl. According to Wei’s morphological criteria [56], the fungal isolates were identified morphologically on agar plates after 7–14 days incubation at 29 °C. A series of purification and subculture steps were carried out to obtain purified fungal isolates, and photos were taken of each pure isolate (Figure 1).
Figure 1

Morphological photos of the 23 derived fungal isolates (S001–S023).

2.3. DNA Genome Extraction from Pure Subcultured Fungal Isolates

The distinct, pure fungal isolates described above were subcultured in Sabouraud dextrose liquid medium for 3–7 days at 29 °C. The mycelia were separated by filtration and dried using a freeze dryer. According to the manufacturer’s instructions, the fungal DNA extraction of the resulting tissues was performed using the QIAamp DNA Mini Kit (Qiagen, Valencia, CA, USA). The integrity of the extracted DNA was checked and confirmed by gel electrophoresis.

2.4. Internal Transcribed Spacer-rDNA (ITS-rDNA) Fragments Amplification, Sequencing, and Phylogenetic Analysis of Fungal Isolates

Using the primers ITS1 (5′-TCCGTAGGTGAACCTGCG-3′) and ITS4 (5′-TCCTCCGCTTATTGATATGC-3′) [57], the genomic DNA of the fungal isolates was used as the template to amplify fungal ITS-rDNA fragments. For preliminary identification, the sequences of fungal ITS-rDNA regions were compared with related sequences at the National Center for Biotechnology Information (NCBI) as previously described [58,59,60].

2.5. Fermentation and Preparation of Extracts of the Fungal Isolate S020

A. terreus strain S020 was cultured under static conditions at room temperature in 2 L Erlenmeyer flasks containing 500 mL of potato dextrose liquid culture medium (PDB). After 40 days of cultivation, 21 L of whole broth was filtered through cheesecloth to separate the culture broth from the mycelia. The broth was extracted three times with ethyl acetate (EtOAc), while the mycelia were extracted three times with methanol (MeOH). Both EtOAc and MeOH extracts showed a similar TLC pattern and so were combined and concentrated to generate a crude extract (17.49 g) for further separation.

2.6. Isolation and Purification of Terrein

The total crude extract (17.49 g) of A. terreus strain S020 was subjected to silica gel column chromatography (CC) using gradient elution of n-hexane, CHCl3, and MeOH at a flow rate of about 20 mL/min. Fractions of 100 mL were collected and examined by TLC; similar fractions were combined and evaporated under reduced pressure to obtain fractions 1–10. Fraction 5 (CHCl3 fraction, 13.50 g) was subjected to silica gel CC with CHCl3MeOH gradient elution to afford seven further fractions. Of these, the bioactive fractions eluted with CHCl3MeOH (20:1) were concentrated to yield a terrein precipitate (9.20 g, purity 85%) which was finally purified by HPLC (XDB-C18 Zorbax, 5 µm, 250 mm × 4.6 mm) using 20% CH3CN/H2O at a flow rate of 1 mL/min and UV detection at 281 nm. Terrein was characterized as follows: Colorless crystal needles (10.3 mg); + 151.0 (c 0.5, MeOH); UV (λmax, MeOH) (log ε): 227 (4.31), 281 (2.51) nm; spectroscopic NMR data: (see Supplementary Materials); ESI-MS: m/z 155.07 [M + H]⁺; high-resolution electrospray ionization mass spectrometry (HRESIMS): m/z 155.0698 (calculated for C8H11O3 [M + H]⁺, 155.0708).

2.7. Biological Activity

2.7.1. Preparation of the Extracts of Isolates S001–S023

The fungal strains S001–S023 were inoculated into 250 mL Erlenmeyer flasks containing 50 mL of the corresponding liquid media (Table 1), incubated at 29 °C, and continuously shaken at 150 rounds per minute (rpm) in an orbital shaker for 14 days. After incubation, 50 mL of EtOAc was added to each flask and left overnight to stop cell growth. The mycelia were separated by filtration, and the filtrate was extracted three times (3 × 50 mL) with EtOAc. The organic portion (combined extracts) was evaporated under vacuum, and the residues obtained were washed with water and then taken to dryness to obtain colored crude extracts (broth extract). Other crude extracts (mycelia extract) were obtained by extraction of mycelia with MeOH and evaporation of the solvent under a vacuum. The resulting EtOAc and MeOH extracts were lyophilized and stored for biological screening.
Table 1

Antimicrobial activities of isolated fungal strains’ (S001–S023) crude extracts of both fermentation broth and mycelia.

Marine.HostFungal StrainCulture Media Pseudomonas aeruginosa Bacillus subtilis Staphylococcus aureus Candida albicans
GenusStrainBrothMyceliaBrothMyceliaBrothMyceliaBrothMycelia
Stylissa carteri Penicillium S001CZYB+++++++++++
Aspergillus S002CZYB+++++++++++
Sediment Penicillium S003CZYB+++++++++++
Aspergillus S004CZYB+++++++
Aspergillus S005CZYB+++++++++++++++
Aspergillus S006CZYB++++++++
Aspergillus S007CZYB++++++++
Pleosporaceae S008CZYB++++++++
Hyrtios erectus Aspergillus S009MEB+++
Penicillium S010MEB+++
Penicillium S011MEB+++++++
Sediment Aspergillus S012MEB++++++++++++++
Sediment Aspergillus S013MEB++++++++++++
H. erectus Penicillium S014SDB+++++++++
S. carteri Penicillium S015SDB+++++++++++++++
Deep Sea Aspergillus S016SDB+++++++++++
Aspergillus S017SDB+++++++++++++++++
Aspergillus S018SDB++++++++
Sediment Aspergillus S019SDB+++++++++++++
Aspergillus S020SDB++++++++
Aspergillus S021SDB+++++++++++
Aspergillus S022SDB++++++++++++
Aspergillus S023SDB+++++++++

Sabouraud dextrose broth (SDB); malt extract broth (MEB); Czapek–Dox broth (CZYB). Extracts tested at concentrations of 2 mg/mL; inhibition zone in mm including disc. Inhibition diameters were used to describe the groups of microbial growth inhibition: growth inhibition diameter more than 15 mm (++++); between 15 and 10 mm (+++); and less than 7 mm (+); no inhibition noticed (−).

2.7.2. Antimicrobial and Cytotoxic Activities of Fungal Extracts of Isolates S001–S023

The crude extracts of the broth and mycelial biomass were subjected to antimicrobial activity assessment against four pathogenic microorganisms: P. aeruginosa (ATCC27853), B. subtilis (ATCC6633), S. aureus (ATCC25923) and C. albicans (ATCC76615). Assays were performed by placing 50 µL of the test extract solution (2 mg/mL, DMSO) into each hole on the plates and allowing solutions to stand overnight into an incubator at an appropriate temperature. Activity is indicated by the presence of a clear zone of growth inhibition surrounding the holes. Inhibition zones were measured in mm, and the results are reported in Table 1. The cytotoxic activity of the test extracts on MCF-7, HCT-116, and HepG2 carcinoma cells was tested using the sulforhodamine B (SRB) assay, as previously described in our studies [54], and the results are presented in Table 2.
Table 2

In vitro antiproliferative activities (IC50, μg/mL) of isolated fungal strains’ (S001–S023) crude extracts of both fermentation broth and mycelia against human carcinoma cells (MCF-7, HCT-116, and HepG2).

MarineHostFungal StrainCulture MediaCell Lines
GenusStrain BreastMCF-7Hepatocellular HepG2ColorectalHCT-116
BrothMyceliaBrothMyceliaBrothMycelia
S. carteri Penicillium S001CZYB75.44˃10079.26˃100˃10092.60
Aspergillus S002CZYB73.28˃10061.96˃100˃10048.00
Sediment Penicillium S003CZYB55.16˃10048.96˃100˃10068.40
Aspergillus S004CZYB22.7281.9513.55˃10042.7551.40
Aspergillus S005CZYB70.29˃10060.22˃100˃10070.66
Aspergillus S006CZYB34.2792.1540.20˃10062.20˃100
Aspergillus S007CZYB60.50˃10065.63˃10087.0080.00
Pleosporaceae S008CZYB92.00˃100˃100˃100˃100˃100
H. erectus Aspergillus S009MEB˃100˃100˃100˃100˃100˃100
Penicillium S010MEB73.60˃100˃100˃100˃100˃100
Penicillium S011MEB57.67˃10083.20˃100˃100˃100
Sediment Aspergillus S012MEB˃10092.0092.00˃100˃10097.00
Sediment Aspergillus S013MEB39.0079.9254.8186.7673.6092.60
H. erectus Penicillium S014SDB79.53˃10092.80˃100˃100˃100
S. carteri Penicillium S015SDB64.70˃10066.26˃10074.2015.00
Deep Sea Aspergillus S016SDB23.2793.5041.7067.4462.0081.00
Aspergillus S017SDB42.26˃10054.4099.0853.16˃100
Aspergillus S018SDB60.48˃10097.70˃10090.00˃100
Sediment Aspergillus S019SDB51.00˃10086.72˃10049.80˃100
Aspergillus S020SDB44.0081.9557.00˃10047.8367.00
Aspergillus S021SDB89.9368.1563.29˃10074.6089.66
Aspergillus S022SDB65.1287.0091.80˃10081.60˃100
Aspergillus S023SDB˃100˃100˃100˃100˃100˃100
Doxorubicin 0.41 ± 0.10.85 ± 0.10.11 ± 0.04

Doxorubicin positive cytotoxic control, presented as the mean ± SD; n = 3.

3. Results and Discussion

3.1. Diversity of Culturable Fungal Strains Derived from the Marine Samples

The cultivation of fungal strains from two marine sponges (Stylissa carteri and Hyrtios erectus) and deep-sea sediment of the Red Sea yielded a total of 36 isolates. Based on morphological traits as well as DNA analysis of the ITS regions [57,61], the redundant strains were excluded, and 23 distinct, pure isolates, were identified (S001–S023; Table 3, Figure 1). The strains from Penicillium spp. and Aspergillus spp. accounted for a large proportion of the total isolates. Twenty-three isolates were identified on the basis of morphological traits at the genus and species levels via genomic DNA extraction and sequencing analysis.
Table 3

Identification of the isolated fungal strains (S001–S023). The closest relatives to fungal strains according to a BLAST search are presented.

IsolateGenus IdentificationSequence Length (bp)Related Strain(BLAST)Access No.Similarity (%)
S001Penicillium sp.522 Penicillium chrysogenum KU55630199%
S002Aspergillus sp.490 Aspergillus cristatus KT15156598%
S003Penicillium sp.524 P. chrysogenum KX26683198%
S004Aspergillus sp.531 Aspergillus niger KJ88137795%
S005Aspergillus sp.530 A. niger KU90448096%
S006Aspergillus sp.532 Aspergillus flavus HQ64594099%
S007Aspergillus sp.530 Aspergillus tubingensis KX01598897%
S008Pleosporaceae sp505Pleosporaceae sp.KJ44326497%
S009Aspergillus sp.629Aspergillus sp.HQ02322798%
S010Penicillium sp.534 Penicillium polonicum KF49414899%
S011Penicillium sp.525 P. polonicum KP79407498%
S012Aspergillus sp.527Aspergillus sp.KX01599497%
S013Aspergillus sp.502 Aspergillus foveolatus KU86661599%
S014Penicillium sp.519 P.chrysogenum KX01599898%
S015Penicillium sp.526 P. chrysogenum KU74390098%
S016Aspergillus sp.523 A. flavus FJ21638898%
S017Aspergillus sp.529 A. flavus KX01598695%
S018Aspergillus sp.644 A. niger KT37725099%
S019Aspergillus sp.438 A. niger LC19500398%
S020Aspergillus sp.538 Aspergillus terreus KX69414898%
S021Aspergillus sp.330Aspergillus sp.KX00026994%
S022Aspergillus sp.536 Aspergillus fumigatus KU74388998%
S023Aspergillus sp.531Aspergillus sp.KU84242699%
The phylogenetic tree of fungal strains (Figure 2) represents those fungi that are easily cultivable and could be recovered when culture-dependent techniques are applied [62]. Representative fungal isolates of these strains that have been previously cultured from marine samples include sponges, algae, cnidarians, and sea grasses [63]. The marine invertebrate symbiotic fungi have been reported as a rich source of bioactive secondary metabolites, such as polyketides, with antimicrobial and/or antitumor activities [14,62,63,64]. Our study revealed that the diversity of symbiotic fungal isolates (Penicillium, 6 strains; Aspergillus, 17 strains; Pleosporaceae, 1 strain) obtained from the marine samples was high.
Figure 2

Phylogenetic tree of isolated fungal strains S001–S023.

3.2. Large-Scale Production and Purification of Terrein from A. terreus Strain S020

The culture broth and mycelia of A. terreus strain S020 were extracted using organic solvents, and the combined extracts were fractionated using silica gel column chromatography. The compound terrein was finally purified using a C18 semi-preparative HPLC column.

3.3. Structure Elucidation of the Isolated Terrein

Terrein (Figure 3) was isolated and purified as pale yellow crystal needles. The molecular formula, C8H10O3, was determined to be m/z 154.06 by HRESIMS at m/z 155.0698 [M + H]⁺ and m/z 177.0529 [M + Na]⁺. Interpretation of NMR and HRMS data (Figures S4–S8) suggested that the compound isolated was terrein, as previously reported [28,42].
Figure 3

The structure of terrein.

3.4. Biological Activities

3.4.1. Antimicrobial Activities of the Fungal Extracts

All 23 fungal isolates were cultured on a small scale, and the crude extracts of their broth and mycelia were tested for antimicrobial activity (against P. aeruginosa ATCC27853, B. subtilis ATCC6633, S. aureus ATCC25923 and C. albicans ATCC76615) using the agar diffusion assay [65]. Fungal isolate extracts displayed different levels of antimicrobial activities against at least one pathogen (Table 1). It is worth pointing out that the extracts of most fungal strains displayed exceptionally high antibacterial activities against P. aeruginosa and S. aureus (inhibition diameters more than 15 mm). Amongst these, the extract of fungal strain S013 exhibited high activity against C. albicans, while other extracts were inactive (Table 1). From our investigation in this study, we found that extracts of some fungal broths and/or mycelia have antimicrobial effects and that different fungal strains could secrete intracellular and extracellular bioactive metabolic products [66]. Because of the efficacy of these extracts against P. aeruginosa and S. aureus, these extracts might have the potential to serve as drug leads to treat a wide variety of diseases. The results of the antimicrobial assay revealed that fungi derived from the marine source isolated in this study might be a prolific source of active compounds, which may hold potential as antibacterial and antifungal natural compounds.

3.4.2. Antiproliferative Activities of the Fungal Extracts

All 23 fungal isolates were cultured on a small scale, and the crude extracts of their fungal broth and mycelia were tested for antiproliferative activity against MCF-7, HepG2, and HCT-116 cell lines using the SRB-U assay [67]. The extracts showed variable antiproliferative activity against the cell lines under investigation. Amongst these, extracts of S004, S006, S016, S017, and S020 presented the most promising antiproliferative profile (IC50 values of < 50 µg/mL) (Table 2). The present study revealed the diversity of the antiproliferative potential of marine fungal extracts and, hence, demonstrated their strong potential to produce cytotoxic compounds. Marine fungi and their purified extracts have been shown to be good producers of antiproliferative and cytotoxic compounds. This property could be attributed to different classes of secondary metabolites, as reported previously [20,25,26,27,68,69,70,71].

3.4.3. Cytotoxic Activity of the Isolated Compound Terrein

The cytotoxic effect of terrein (Table 4) against HCT-116 and HepG2 cancer cell lines (concentration range 0.01–100 μM) was assessed using the SRB-U assay [67]. The compound displayed strong antiproliferative activity against the two cell lines under investigation, with IC50 values of 12.13 μM and 22.53 μM for HCT-116 and HepG2 cells, respectively. Doxorubicin was used as a standard cytotoxic control.
Table 4

In vitro cytotoxic activity (IC50, µM) of terrein against human carcinoma cells (HCT-116 and HepG2).

Cell TypeCell LineDoxorubicin Terrein
ColorectalHCT-1160.11 ± 0.0412.13
HepatocellularHepG20.85 ± 0.122.53

Doxorubicin positive cytotoxic control, presented as the mean ± SD; n = 3.

4. Conclusions

In conclusion, a total of 23 symbiotic fungi distributed among 3 genera were identified and isolated from marine sponges and sediment collected off Obhur (Saudi Arabia). The biological screening of small-scale cultures of these fungi yielded several target fungal strains which produced secondary bioactive metabolites. Amongst these isolates, the chromatographic separation of the crude extract of A. terreus strain S020 by silica gel column chromatography led to the isolation of pure crystalline terrain, with a high yield of 537.26 ± 23.42 g/kg dried crude extract; this represents the highest fermentation production of terrein to date. The chemical structure was elucidated on the basis of HRMS, 1D, and 2D NMR spectroscopic analyses, and by comparison with reported data. The isolated compound, terrein, showed strong cytotoxic activity against colorectal carcinoma cells and hepatocellular carcinoma cells, with IC50 values of 12.13 and 22.53 µM, respectively. Our study contributes to the understanding of fungal diversity and provides the basis for future investigations of these symbionts with respect to identifying and purifying the bioactive leads in these fungal extracts. This study also describes an efficient approach for producing bioactive terrein in a very high yield. Currently, there is great demand for the development of new drugs to combat the emergence of bacterial resistance to traditional antibiotics.
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