Literature DB >> 31543209

Research Techniques Made Simple: Feature Selection for Biomarker Discovery.

Rodrigo Torres1, Robert L Judson-Torres2.   

Abstract

Molecular biomarkers can be powerful tools for aiding in the efficiency and precision of clinical decision-making. Feature selection methods, machine-learning, and biostatistics have been applied to discover subsets of molecular markers that identify target classes of clinical cases. For example, in the field of dermatology, these approaches have been used to develop predictive models that identify skin diseases, ranging from melanoma to psoriasis, based upon a variety of biomarkers. However, a continuous increase in the variety and size of datasets from which candidate biomarkers can be derived, and limitations in the computational tools used to analyze them, have hindered the interpretability of biomarker discovery studies. In this article, the various methods of feature selection are described along with the important steps needed to properly validate the performance of the selected methods. Limitations and suggestions toward uses of these methods are discussed.
Copyright © 2019 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2019        PMID: 31543209     DOI: 10.1016/j.jid.2019.07.682

Source DB:  PubMed          Journal:  J Invest Dermatol        ISSN: 0022-202X            Impact factor:   8.551


  5 in total

1.  Supervised Methods for Biomarker Detection from Microarray Experiments.

Authors:  Angela Serra; Luca Cattelani; Michele Fratello; Vittorio Fortino; Pia Anneli Sofia Kinaret; Dario Greco
Journal:  Methods Mol Biol       Date:  2022

2.  LBD: a manually curated database of experimentally validated lymphoma biomarkers.

Authors:  Bin Tan; Saige Xin; Yanshi Hu; Cong Feng; Ming Chen
Journal:  Database (Oxford)       Date:  2022-07-05       Impact factor: 4.462

3.  Identification of Biomarkers and Critical Evaluation of Biomarker Validation in Hidradenitis Suppurativa: A Systematic Review.

Authors:  Samuel Der Sarkissian; Schapoor Hessam; Joslyn S Kirby; Michelle A Lowes; Dillon Mintoff; Haley B Naik; Hans Christian Ring; Nisha Suyien Chandran; John W Frew
Journal:  JAMA Dermatol       Date:  2022-03-01       Impact factor: 11.816

4.  Isotypes of autoantibodies against novel differential 4-hydroxy-2-nonenal-modified peptide adducts in serum is associated with rheumatoid arthritis in Taiwanese women.

Authors:  Kai-Leun Tsai; Che-Chang Chang; Yu-Sheng Chang; Yi-Ying Lu; I-Jung Tsai; Jin-Hua Chen; Sheng-Hong Lin; Chih-Chun Tai; Yi-Fang Lin; Hui-Wen Chang; Ching-Yu Lin; Emily Chia-Yu Su
Journal:  BMC Med Inform Decis Mak       Date:  2021-02-10       Impact factor: 2.796

5.  Scale space detector for analyzing spatiotemporal ventricular contractility and nuclear morphogenesis in zebrafish.

Authors:  Tanveer Teranikar; Cameron Villarreal; Nabid Salehin; Toluwani Ijaseun; Jessica Lim; Cynthia Dominguez; Vivian Nguyen; Hung Cao; Cheng-Jen Chuong; Juhyun Lee
Journal:  iScience       Date:  2022-08-05
  5 in total

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