Literature DB >> 31539253

Quantum Mechanics/Extremely Localized Molecular Orbital Method: A Fully Quantum Mechanical Embedding Approach for Macromolecules.

Giovanni Macetti1, Alessandro Genoni1.   

Abstract

The development of methods for the quantum mechanical study of macromolecules has always been an important challenge in theoretical chemistry. Nowadays, the techniques proposed in this context can be used to investigate very large systems and can be subdivided into two main categories: fragmentation and embedding strategies. In this paper, by modifying and improving the local self-consistent field approach originally proposed for quantum mechanics/molecular mechanics techniques, we introduce the new multiscale embedding quantum mechanics/extremely localized molecular orbital (QM/ELMO) method. The new strategy enables treatment of chemically relevant regions of large biological molecules through usual methods of quantum chemistry while describing the remaining parts of the systems by means of frozen extremely localized molecular orbitals transferred from properly constructed libraries. Test calculations have shown the correct functioning and the high reliability of the new approach, thus anticipating its possible applications to different fields of physical chemistry, such as rational drug design and structural refinements of proteins.

Year:  2019        PMID: 31539253     DOI: 10.1021/acs.jpca.9b08882

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  4 in total

1.  Linear-Scaling Implementation of Multilevel Hartree-Fock Theory.

Authors:  Linda Goletto; Eirik F Kjønstad; Sarai D Folkestad; Ida-Marie Høyvik; Henrik Koch
Journal:  J Chem Theory Comput       Date:  2021-11-07       Impact factor: 6.006

2.  Fragmentation and transferability in Hirshfeld atom refinement.

Authors:  Michał Chodkiewicz; Sylwia Pawlędzio; Magdalena Woińska; Krzysztof Woźniak
Journal:  IUCrJ       Date:  2022-02-26       Impact factor: 4.769

3.  Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement.

Authors:  Michal L Chodkiewicz; Roman Gajda; Barbara Lavina; Sergey Tkachev; Vitali B Prakapenka; Przemyslaw Dera; Krzysztof Wozniak
Journal:  IUCrJ       Date:  2022-07-16       Impact factor: 5.588

4.  The advanced treatment of hydrogen bonding in quantum crystallography.

Authors:  Lorraine A Malaspina; Alessandro Genoni; Dylan Jayatilaka; Michael J Turner; Kunihisa Sugimoto; Eiji Nishibori; Simon Grabowsky
Journal:  J Appl Crystallogr       Date:  2021-04-16       Impact factor: 3.304

  4 in total

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