Literature DB >> 31536774

Mind the gap: Micro-expansion joints drastically decrease the bending of FIB-milled cryo-lamellae.

Georg Wolff1, Ronald W A L Limpens1, Shawn Zheng2, Eric J Snijder3, David A Agard2, Abraham J Koster1, Montserrat Bárcena4.   

Abstract

Cryo-focused ion beam (FIB)-milling of biological samples can be used to generate thin electron-transparent slices from cells grown or deposited on EM grids. These so called cryo-lamellae allow high-resolution structural studies of the natural cellular environment by in situ cryo-electron tomography. However, the cryo-lamella workflow is a low-throughput technique and can easily be hindered by technical issues like the bending of the lamellae during the final cryo-FIB-milling steps. The severity of lamella bending seems to correlate with crinkling of the EM grid support film at cryogenic temperatures, which could generate tensions that may be transferred onto the thin lamella, leading to its bending and breakage. To protect the lamellae from such forces, we milled "micro-expansion joints" alongside the lamellae, creating gaps in the support that can act as physical buffers to safely absorb material motion. We demonstrate that the presence of micro-expansion joints drastically decreases bending of lamellae milled from eukaryotic cells grown and frozen on EM grids. Furthermore, we show that this adaptation does not create additional instabilities that could impede subsequent parts of the cryo-lamella workflow, as we obtained high-quality Volta phase plate tomograms revealing macromolecules in their natural structural context. The minimal additional effort required to implement micro-expansion joints in the cryo-FIB-milling workflow makes them a straightforward solution against cryo-lamella bending to increase the throughput of in situ structural biology studies.
Copyright © 2019 The Authors. Published by Elsevier Inc. All rights reserved.

Keywords:  Cellular cryotomography; Cryo-FIB-milling; Cryo-electron tomography; Cryo-lamella; Frozen-hydrated cells; Lamella bending

Year:  2019        PMID: 31536774     DOI: 10.1016/j.jsb.2019.09.006

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  18 in total

1.  Preparing samples from whole cells using focused-ion-beam milling for cryo-electron tomography.

Authors:  Felix R Wagner; Reika Watanabe; Ruud Schampers; Digvijay Singh; Hans Persoon; Miroslava Schaffer; Peter Fruhstorfer; Jürgen Plitzko; Elizabeth Villa
Journal:  Nat Protoc       Date:  2020-05-13       Impact factor: 13.491

2.  Membrane-anchored HDCR nanowires drive hydrogen-powered CO2 fixation.

Authors:  Helge M Dietrich; Ricardo D Righetto; Anuj Kumar; Wojciech Wietrzynski; Raphael Trischler; Sandra K Schuller; Jonathan Wagner; Fabian M Schwarz; Benjamin D Engel; Volker Müller; Jan M Schuller
Journal:  Nature       Date:  2022-07-20       Impact factor: 69.504

3.  A modular platform for automated cryo-FIB workflows.

Authors:  Sven Klumpe; Herman Kh Fung; Sara K Goetz; Ievgeniia Zagoriy; Bernhard Hampoelz; Xiaojie Zhang; Philipp S Erdmann; Janina Baumbach; Christoph W Müller; Martin Beck; Jürgen M Plitzko; Julia Mahamid
Journal:  Elife       Date:  2021-12-24       Impact factor: 8.140

4.  Investigating eukaryotic cells with cryo-ET.

Authors:  Cai Tong Ng; Lu Gan
Journal:  Mol Biol Cell       Date:  2020-01-15       Impact factor: 4.138

5.  Post-correlation on-lamella cryo-CLEM reveals the membrane architecture of lamellar bodies.

Authors:  Steffen Klein; Benedikt H Wimmer; Sophie L Winter; Androniki Kolovou; Vibor Laketa; Petr Chlanda
Journal:  Commun Biol       Date:  2021-01-29

6.  Practical Approaches for Cryo-FIB Milling and Applications for Cellular Cryo-Electron Tomography.

Authors:  Vinson Lam; Elizabeth Villa
Journal:  Methods Mol Biol       Date:  2021

7.  Fully automated, sequential focused ion beam milling for cryo-electron tomography.

Authors:  Tobias Zachs; Andreas Schertel; João Medeiros; Gregor L Weiss; Jannik Hugener; Joao Matos; Martin Pilhofer
Journal:  Elife       Date:  2020-03-09       Impact factor: 8.140

8.  SARS-CoV-2 structure and replication characterized by in situ cryo-electron tomography.

Authors:  Steffen Klein; Mirko Cortese; Sophie L Winter; Moritz Wachsmuth-Melm; Christopher J Neufeldt; Berati Cerikan; Megan L Stanifer; Steeve Boulant; Ralf Bartenschlager; Petr Chlanda
Journal:  Nat Commun       Date:  2020-11-18       Impact factor: 14.919

Review 9.  Considerations of Antibody Geometric Constraints on NK Cell Antibody Dependent Cellular Cytotoxicity.

Authors:  Charles D Murin
Journal:  Front Immunol       Date:  2020-07-30       Impact factor: 7.561

10.  An introduction to cryo-FIB-SEM cross-sectioning of frozen, hydrated Life Science samples.

Authors:  M F Hayles; D A M DE Winter
Journal:  J Microsc       Date:  2020-08-24       Impact factor: 1.758

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