Literature DB >> 31536012

Computerized Classification of Prostate Cancer Gleason Scores from Whole Slide Images.

Hongming Xu, Sunho Park, Tae Hyun Hwang.   

Abstract

Histological Gleason grading of tumor patterns is one of the most powerful prognostic predictors in prostate cancer. However, manual analysis and grading performed by pathologists are typically subjective and time-consuming. In this paper, we present an automatic technique for Gleason grading of prostate cancer from H&E stained whole slide pathology images using a set of novel completed and statistical local binary pattern (CSLBP) descriptors. First, the technique divides the whole slide image (WSI) into a set of small image tiles, where salient tumor tiles with high nuclei densities are selected for analysis. The CSLBP texture features that encode pixel intensity variations from circularly surrounding neighborhoods are extracted from salient image tiles to characterize different Gleason patterns. Finally, the CSLBP texture features computed from all tiles are integrated and utilized by the multi-class support vector machine (SVM) that assigns patient slides with different Gleason scores such as 6, 7, or ≥ 8. Experiments have been performed on 312 different patient cases selected from the cancer genome atlas (TCGA) and have achieved superior performances over state-of-the-art texture descriptors and baseline methods including deep learning models for prostate cancer Gleason grading.

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Year:  2020        PMID: 31536012     DOI: 10.1109/TCBB.2019.2941195

Source DB:  PubMed          Journal:  IEEE/ACM Trans Comput Biol Bioinform        ISSN: 1545-5963            Impact factor:   3.710


  6 in total

1.  Spatial heterogeneity and organization of tumor mutation burden with immune infiltrates within tumors based on whole slide images correlated with patient survival in bladder cancer.

Authors:  Hongming Xu; Jean René Clemenceau; Sunho Park; Jinhwan Choi; Sung Hak Lee; Tae Hyun Hwang
Journal:  J Pathol Inform       Date:  2022-05-21

2.  Comparison of texture-based classification and deep learning for plantar soft tissue histology segmentation.

Authors:  Lynda Brady; Yak-Nam Wang; Eric Rombokas; William R Ledoux
Journal:  Comput Biol Med       Date:  2021-05-15       Impact factor: 6.698

3.  Resolution-agnostic tissue segmentation in whole-slide histopathology images with convolutional neural networks.

Authors:  Péter Bándi; Maschenka Balkenhol; Bram van Ginneken; Jeroen van der Laak; Geert Litjens
Journal:  PeerJ       Date:  2019-12-17       Impact factor: 2.984

4.  Predictive models of response to neoadjuvant chemotherapy in muscle-invasive bladder cancer using nuclear morphology and tissue architecture.

Authors:  Haoyang Mi; Trinity J Bivalacqua; Max Kates; Roland Seiler; Peter C Black; Aleksander S Popel; Alexander S Baras
Journal:  Cell Rep Med       Date:  2021-08-27

Review 5.  Artificial intelligence as a tool for diagnosis in digital pathology whole slide images: A systematic review.

Authors:  João Pedro Mazuco Rodriguez; Rubens Rodriguez; Vitor Werneck Krauss Silva; Felipe Campos Kitamura; Gustavo Cesar Antônio Corradi; Ana Carolina Bertoletti de Marchi; Rafael Rieder
Journal:  J Pathol Inform       Date:  2022-09-08

6.  A Deep Learning Model for Prostate Adenocarcinoma Classification in Needle Biopsy Whole-Slide Images Using Transfer Learning.

Authors:  Masayuki Tsuneki; Makoto Abe; Fahdi Kanavati
Journal:  Diagnostics (Basel)       Date:  2022-03-21
  6 in total

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