Literature DB >> 31530139

Fluctuating fortunes: genomes and habitat reconstructions reveal global climate-mediated changes in bats' genetic diversity.

Balaji Chattopadhyay1, Kritika M Garg1, Rajasri Ray2,3, Frank E Rheindt1.   

Abstract

Over the last approximately 2.6 Myr, Earth's climate has been dominated by cyclical ice ages that have profoundly affected species' population sizes, but the impact of impending anthropogenic climate change on species' extinction potential remains a worrying problem. We investigated 11 bat species from different taxonomic, ecological and geographical backgrounds using combined information from palaeoclimatic habitat reconstructions and genomes to analyse biotic impacts of historic climate change. We discover tightly correlated fluctuations between species' historic distribution and effective population size, identify frugivores as particularly susceptible to global warming, pinpoint large insectivores as having overall low effective population size and flag the onset of the Holocene (approx. 10-12 000 years ago) as the period with the generally lowest effective population sizes across the last approximately 1 Myr. Our study shows that combining genomic and palaeoclimatological approaches reveals effects of climatic shifts on genetic diversity and may help predict impacts of future climate change.

Keywords:  Chiroptera; climate change; demographic history; ecological niche model; global warming; pairwise sequentially Markovian coalescent

Mesh:

Year:  2019        PMID: 31530139      PMCID: PMC6784725          DOI: 10.1098/rspb.2019.0304

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  46 in total

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Authors:  G Hewitt
Journal:  Nature       Date:  2000-06-22       Impact factor: 49.962

2.  Generation time: a reliable metric to measure life-history variation among mammalian populations.

Authors:  Jean-Michel Gaillard; Nigel G Yoccoz; Jean-Dominique Lebreton; Christophe Bonenfant; Sébastien Devillard; Anne Loison; Dominique Pontier; Dominique Allaine
Journal:  Am Nat       Date:  2005-05-31       Impact factor: 3.926

3.  Demographic inference using genetic data from a single individual: Separating population size variation from population structure.

Authors:  Olivier Mazet; Willy Rodríguez; Lounès Chikhi
Journal:  Theor Popul Biol       Date:  2015-06-25       Impact factor: 1.570

4.  The effects of Pleistocene climate change on biotic differentiation in a montane songbird clade from Wallacea.

Authors:  Nathaniel S R Ng; Peter R Wilton; Dewi Malia Prawiradilaga; Ywee Chieh Tay; Mochamad Indrawan; Kritika M Garg; Frank E Rheindt
Journal:  Mol Phylogenet Evol       Date:  2017-05-10       Impact factor: 4.286

5.  Mutation rates in mammalian genomes.

Authors:  Sudhir Kumar; Sankar Subramanian
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-15       Impact factor: 11.205

Review 6.  Inferring population size changes with sequence and SNP data: lessons from human bottlenecks.

Authors:  L M Gattepaille; M Jakobsson; M G B Blum
Journal:  Heredity (Edinb)       Date:  2013-02-20       Impact factor: 3.821

7.  The complex evolutionary history of big-eared horseshoe bats (Rhinolophus macrotis complex): insights from genetic, morphological and acoustic data.

Authors:  Keping Sun; Rebecca T Kimball; Tong Liu; Xuewen Wei; Longru Jin; Tinglei Jiang; Aiqing Lin; Jiang Feng
Journal:  Sci Rep       Date:  2016-10-17       Impact factor: 4.379

8.  Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly.

Authors:  Soonok Kim; Yun Sung Cho; Hak-Min Kim; Oksung Chung; Hyunho Kim; Sungwoong Jho; Hong Seomun; Jeongho Kim; Woo Young Bang; Changmu Kim; Junghwa An; Chang Hwan Bae; Youngjune Bhak; Sungwon Jeon; Hyejun Yoon; Yumi Kim; JeHoon Jun; HyeJin Lee; Suan Cho; Olga Uphyrkina; Aleksey Kostyria; John Goodrich; Dale Miquelle; Melody Roelke; John Lewis; Andrey Yurchenko; Anton Bankevich; Juok Cho; Semin Lee; Jeremy S Edwards; Jessica A Weber; Jo Cook; Sangsoo Kim; Hang Lee; Andrea Manica; Ilbeum Lee; Stephen J O'Brien; Jong Bhak; Joo-Hong Yeo
Journal:  Genome Biol       Date:  2016-10-11       Impact factor: 13.583

9.  Fast and accurate long-read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2010-01-15       Impact factor: 6.937

10.  Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation.

Authors:  Paulo De Marco; Caroline Corrêa Nóbrega
Journal:  PLoS One       Date:  2018-09-11       Impact factor: 3.240

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  2 in total

1.  Life-history traits and habitat availability shape genomic diversity in birds: implications for conservation.

Authors:  Anna Brüniche-Olsen; Kenneth F Kellner; Jerrold L Belant; J Andrew DeWoody
Journal:  Proc Biol Sci       Date:  2021-10-27       Impact factor: 5.349

2.  Population dynamics of caribou shaped by glacial cycles before the last glacial maximum.

Authors:  Rebecca S Taylor; Micheline Manseau; Cornelya F C Klütsch; Jean L Polfus; Audrey Steedman; Dave Hervieux; Allicia Kelly; Nicholas C Larter; Mary Gamberg; Helen Schwantje; Paul J Wilson
Journal:  Mol Ecol       Date:  2021-09-17       Impact factor: 6.622

  2 in total

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