Literature DB >> 31520683

A new solid matrix for preservation of viral nucleic acid from clinical specimens at ambient temperature.

Theresa Cromeans1, Narayanan Jothikumar2, Jeongsu Lee3, Nikail Collins4, Cara C Burns5, Vincent R Hill2, Jan Vinjé6.   

Abstract

Stabilizing paper matrix methods for retaining nucleic acid from inactivated clinical specimens offer a solution for molecular diagnostics when specimens may be stored or shipped at ambient temperature. We developed cellulose disks (UNEXP) saturated with a total nucleic acid extraction buffer (UNEX) modified from a previously developed lysis buffer for multiple enteric pathogens. Infectivity of hepatitis A virus, adenovirus and poliovirus was destroyed after 2-3 h incubation at room temperature on the UNEXP disks. Norovirus RNA could be detected in UNEXP-eluted nucleic acids by reverse transcription-quantitative PCR (RT-qPCR) from 54 stool samples after 2 weeks storage at room temperature on disks; a subset of seven samples were positive after 3 months storage. Genotyping was successful in 76% of 54 samples tested including six of seven samples stored on the UNEXP disks for up to one month. Comparison of UNEXP with the FTA elute card in a subset of 10 samples demonstrated similar detection and genotyping rates after two weeks of storage at room temperature. UNEXP disks could be useful for epidemiologic investigations of disease outbreaks in resource-limited areas by simplifying specimen transport to regional diagnostic laboratories or shipment to international centers without the need to ship samples on dry ice. Published by Elsevier B.V.

Entities:  

Keywords:  Norovirus; Nucleic acid preservation; Safe transport; Virus inactivation

Mesh:

Substances:

Year:  2019        PMID: 31520683      PMCID: PMC8974402          DOI: 10.1016/j.jviromet.2019.113732

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  37 in total

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Journal:  Environ Sci Technol       Date:  2010-09-15       Impact factor: 9.028

2.  Improving molecular tools for global surveillance of measles virus.

Authors:  Bettina Bankamp; Lauren A Byrd-Leotis; Elena N Lopareva; Gibson K S Woo; Chunyu Liu; Youngmee Jee; Hinda Ahmed; Wilina W Lim; Nalini Ramamurty; Mick N Mulders; David Featherstone; William J Bellini; Paul A Rota
Journal:  J Clin Virol       Date:  2013-06-24       Impact factor: 3.168

3.  Microevolution of Sabin 1 strain in vitro and genetic stability of oral poliovirus vaccine.

Authors:  G V Rezapkin; K M Chumakov; Z Lu; Y Ran; E M Dragunsky; I S Levenbook
Journal:  Virology       Date:  1994-07       Impact factor: 3.616

4.  Stability of hepatitis A virus.

Authors:  G Siegl; M Weitz; G Kronauer
Journal:  Intervirology       Date:  1984       Impact factor: 1.763

5.  Inactivation of adenoviruses, enteroviruses, and murine norovirus in water by free chlorine and monochloramine.

Authors:  Theresa L Cromeans; Amy M Kahler; Vincent R Hill
Journal:  Appl Environ Microbiol       Date:  2009-12-18       Impact factor: 4.792

6.  Replication kinetics and cytopathic effect of hepatitis A virus.

Authors:  T Cromeans; H A Fields; M D Sobsey
Journal:  J Gen Virol       Date:  1989-08       Impact factor: 3.891

7.  Development of a nucleic Acid extraction procedure for simultaneous recovery of DNA and RNA from diverse microbes in water.

Authors:  Vincent R Hill; Jothikumar Narayanan; Rachel R Gallen; Karen L Ferdinand; Theresa Cromeans; Jan Vinjé
Journal:  Pathogens       Date:  2015-05-26

8.  Establishing conditions for the storage and elution of rabies virus RNA using FTA(®) cards.

Authors:  Takeo Sakai; Ayako Ishii; Takao Segawa; Yukihiko Takagi; Yuki Kobayashi; Takuya Itou
Journal:  J Vet Med Sci       Date:  2014-12-27       Impact factor: 1.267

9.  Evaluation of Nucleic Acid Preservation Cards for West Nile Virus Testing in Dead Birds.

Authors:  Leslie Foss; William K Reisen; Ying Fang; Vicki Kramer; Kerry Padgett
Journal:  PLoS One       Date:  2016-06-24       Impact factor: 3.240

10.  Comparison of stool collection and storage on Whatman FTA Elute cards versus frozen stool for enteropathogen detection using the TaqMan Array Card PCR assay.

Authors:  Tahaniyat Lalani; Michele D Tisdale; Jie Liu; Indrani Mitra; Cliff Philip; Elizabeth Odundo; Faviola Reyes; Mark P Simons; Jamie A Fraser; Emma Hutley; Patrick Connor; Brett E Swierczewski; Eric Houpt; David R Tribble; Mark S Riddle
Journal:  PLoS One       Date:  2018-08-30       Impact factor: 3.240

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  2 in total

Review 1.  Acute Viral Gastrointestinal (GI) Infections in the Tropics-A Role for Cartridge-Based Multiplex PCR Panels?

Authors:  Stefanie Kramme; Theo Dähne; Alexey Fomenko; Marcus Panning
Journal:  Trop Med Infect Dis       Date:  2022-05-19

2.  Use of guanidine thiocyanate-based nucleic acid extraction buffers to inactivate poliovirus in potentially infectious materials.

Authors:  Michelle J Honeywood; Stacey Jeffries-Miles; Kimberly Wong; Chelsea Harrington; Cara C Burns; M Steven Oberste; Michael D Bowen; Everardo Vega
Journal:  J Virol Methods       Date:  2021-08-09       Impact factor: 2.623

  2 in total

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