Literature DB >> 31519704

GATA3-Controlled Nucleosome Eviction Drives MYC Enhancer Activity in T-cell Development and Leukemia.

Alexander Y Yang1, Robert Albero1, Laura Belver1, Daniel Herranz2,3, Francesco G Brundu4, S Aidan Quinn1, Pablo Pérez-Durán1, Silvia Álvarez1, Francesca Gianni1, Marissa Rashkovan1, Devya Gurung1, Pedro P Rocha5, Ramya Raviram6,7, Clara Reglero1, Jose R Cortés1, Anisha J Cooke1, Agnieszka A Wendorff1, Valentina Cordó8, Jules P Meijerink8, Raúl Rabadan3,9, Adolfo A Ferrando10,3,11,12.   

Abstract

Long-range enhancers govern the temporal and spatial control of gene expression; however, the mechanisms that regulate enhancer activity during normal and malignant development remain poorly understood. Here, we demonstrate a role for aberrant chromatin accessibility in the regulation of MYC expression in T-cell lymphoblastic leukemia (T-ALL). Central to this process, the NOTCH1-MYC enhancer (N-Me), a long-range T cell-specific MYC enhancer, shows dynamic changes in chromatin accessibility during T-cell specification and maturation and an aberrant high degree of chromatin accessibility in mouse and human T-ALL cells. Mechanistically, we demonstrate that GATA3-driven nucleosome eviction dynamically modulates N-Me enhancer activity and is strictly required for NOTCH1-induced T-ALL initiation and maintenance. These results directly implicate aberrant regulation of chromatin accessibility at oncogenic enhancers as a mechanism of leukemic transformation. SIGNIFICANCE: MYC is a major effector of NOTCH1 oncogenic programs in T-ALL. Here, we show a major role for GATA3-mediated enhancer nucleosome eviction as a driver of MYC expression and leukemic transformation. These results support the role of aberrant chromatin accessibility and consequent oncogenic MYC enhancer activation in NOTCH1-induced T-ALL.This article is highlighted in the In This Issue feature, p. 1631. ©2019 American Association for Cancer Research.

Entities:  

Year:  2019        PMID: 31519704      PMCID: PMC6891196          DOI: 10.1158/2159-8290.CD-19-0471

Source DB:  PubMed          Journal:  Cancer Discov        ISSN: 2159-8274            Impact factor:   39.397


  62 in total

1.  Activating mutations of NOTCH1 in human T cell acute lymphoblastic leukemia.

Authors:  Andrew P Weng; Adolfo A Ferrando; Woojoong Lee; John P Morris; Lewis B Silverman; Cheryll Sanchez-Irizarry; Stephen C Blacklow; A Thomas Look; Jon C Aster
Journal:  Science       Date:  2004-10-08       Impact factor: 47.728

2.  NOTCH1 directly regulates c-MYC and activates a feed-forward-loop transcriptional network promoting leukemic cell growth.

Authors:  Teresa Palomero; Wei Keat Lim; Duncan T Odom; Maria Luisa Sulis; Pedro J Real; Adam Margolin; Kelly C Barnes; Jennifer O'Neil; Donna Neuberg; Andrew P Weng; Jon C Aster; Francois Sigaux; Jean Soulier; A Thomas Look; Richard A Young; Andrea Califano; Adolfo A Ferrando
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-17       Impact factor: 11.205

3.  featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.

Authors:  Yang Liao; Gordon K Smyth; Wei Shi
Journal:  Bioinformatics       Date:  2013-11-13       Impact factor: 6.937

4.  E-CRISP: fast CRISPR target site identification.

Authors:  Florian Heigwer; Grainne Kerr; Michael Boutros
Journal:  Nat Methods       Date:  2014-02       Impact factor: 28.547

5.  A quantitative proteomics approach identifies ETV6 and IKZF1 as new regulators of an ERG-driven transcriptional network.

Authors:  Ashwin Unnikrishnan; Yi F Guan; Yizhou Huang; Dominik Beck; Julie A I Thoms; Sofie Peirs; Kathy Knezevic; Shiyong Ma; Inge V de Walle; Ineke de Jong; Zara Ali; Ling Zhong; Mark J Raftery; Tom Taghon; Jonas Larsson; Karen L MacKenzie; Pieter Van Vlierberghe; Jason W H Wong; John E Pimanda
Journal:  Nucleic Acids Res       Date:  2016-09-06       Impact factor: 16.971

6.  Expression of the transcription factor GATA-3 is required for the development of the earliest T cell progenitors and correlates with stages of cellular proliferation in the thymus.

Authors:  R W Hendriks; M C Nawijn; J D Engel; H van Doorninck; F Grosveld; A Karis
Journal:  Eur J Immunol       Date:  1999-06       Impact factor: 5.532

Review 7.  Enhancer function: new insights into the regulation of tissue-specific gene expression.

Authors:  Chin-Tong Ong; Victor G Corces
Journal:  Nat Rev Genet       Date:  2011-03-01       Impact factor: 53.242

Review 8.  The hardwiring of development: organization and function of genomic regulatory systems.

Authors:  M I Arnone; E H Davidson
Journal:  Development       Date:  1997-05       Impact factor: 6.868

9.  Involvement of transcription factors TCF-1 and GATA-3 in the initiation of the earliest step of T cell development in the thymus.

Authors:  N Hattori; H Kawamoto; S Fujimoto; K Kuno; Y Katsura
Journal:  J Exp Med       Date:  1996-09-01       Impact factor: 14.307

10.  Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees.

Authors:  Ivica Letunic; Peer Bork
Journal:  Nucleic Acids Res       Date:  2016-04-19       Impact factor: 16.971

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  16 in total

1.  Intracellular Cholesterol Pools Regulate Oncogenic Signaling and Epigenetic Circuitries in Early T-cell Precursor Acute Lymphoblastic Leukemia.

Authors:  Marissa Rashkovan; Robert Albero; Francesca Gianni; Pablo Perez-Duran; Hannah I Miller; Adam L Mackey; Elisabeth M Paietta; Martin S Tallman; Jacob M Rowe; Mark R Litzow; Peter H Wiernik; Selina Luger; Maria Luisa Sulis; Rajesh K Soni; Adolfo A Ferrando
Journal:  Cancer Discov       Date:  2022-03-01       Impact factor: 38.272

2.  Firing up chromatin to forge T-ALL.

Authors:  Mark Y Chiang
Journal:  Blood       Date:  2022-04-21       Impact factor: 25.476

Review 3.  Deregulation of enhancer structure, function, and dynamics in acute lymphoblastic leukemia.

Authors:  Laura Belver; Robert Albero; Adolfo A Ferrando
Journal:  Trends Immunol       Date:  2021-04-12       Impact factor: 16.687

4.  A Tumor Suppressor Enhancer of PTEN in T-cell development and leukemia.

Authors:  Olga Lancho; Jui-Wan Loh; Amartya Singh; Shunsuke Kimura; Luca Tottone; Juliette Roels; Anna Kuchmiy; Steven Strubbe; Matthew A Lawlor; Victoria da Silva-Diz; Shirley Luo; Stéphanie Gachet; Carlos A García-Prieto; Rico Hagelaar; Manel Esteller; Jules P P Meijerink; Jean Soulier; Tom Taghon; Pieter Van Vlierberghe; Charles G Mullighan; Hossein Khiabanian; Pedro P Rocha; Daniel Herranz
Journal:  Blood Cancer Discov       Date:  2020-11-24

5.  Noncoding genetic variation in GATA3 increases acute lymphoblastic leukemia risk through local and global changes in chromatin conformation.

Authors:  Hongbo Yang; Hui Zhang; Yu Luan; Tingting Liu; Wentao Yang; Kathryn G Roberts; Mao-Xiang Qian; Bo Zhang; Wenjian Yang; Virginia Perez-Andreu; Jie Xu; Sriranga Iyyanki; Da Kuang; Lena A Stasiak; Shalini C Reshmi; Julie Gastier-Foster; Colton Smith; Ching-Hon Pui; William E Evans; Stephen P Hunger; Leonidas C Platanias; Mary V Relling; Charles G Mullighan; Mignon L Loh; Feng Yue; Jun J Yang
Journal:  Nat Genet       Date:  2022-02-03       Impact factor: 41.307

Review 6.  The role of noncoding mutations in blood cancers.

Authors:  Sunniyat Rahman; Marc R Mansour
Journal:  Dis Model Mech       Date:  2019-11-26       Impact factor: 5.758

7.  Combinatorial ETS1-dependent control of oncogenic NOTCH1 enhancers in T-cell leukemia.

Authors:  Anna C McCarter; Giusy Della Gatta; Ashley Melnick; Erin Kim; Cher Sha; Qing Wang; Jahnavi K Nalamolu; Yiran Liu; Theresa M Keeley; Ran Yan; Mengxi Sun; Rohan Kodgule; Nicholas Kunnath; Alberto Ambesi-Impiombato; Rork Kuick; Arvind Rao; Russell J H Ryan; Barbara L Kee; Linda C Samuelson; Michael C Ostrowski; Adolfo A Ferrando; Mark Y Chiang
Journal:  Blood Cancer Discov       Date:  2020-09

Review 8.  Determinants and role of chromatin organization in acute leukemia.

Authors:  Celestia Fang; Sridhar Rao; John D Crispino; Panagiotis Ntziachristos
Journal:  Leukemia       Date:  2020-07-20       Impact factor: 11.528

9.  EBF1 and PAX5 control pro-B cell expansion via opposing regulation of the Myc gene.

Authors:  Rajesh Somasundaram; Christina T Jensen; Johanna Tingvall-Gustafsson; Josefine Åhsberg; Kazuki Okuyama; Mahadesh Prasad; James R Hagman; Xun Wang; Shamit Soneji; Tobias Strid; Jonas Ungerbäck; Mikael Sigvardsson
Journal:  Blood       Date:  2021-06-03       Impact factor: 22.113

Review 10.  The Genome in a Three-Dimensional Context: Deciphering the Contribution of Noncoding Mutations at Enhancers to Blood Cancer.

Authors:  Llorenç Rovirosa; Alberto Ramos-Morales; Biola M Javierre
Journal:  Front Immunol       Date:  2020-10-07       Impact factor: 7.561

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