| Literature DB >> 31519163 |
Kelly Osezele Elimian1,2, Anwar Musah3, Somto Mezue4, Oyeronke Oyebanji5, Sebastian Yennan5, Arisekola Jinadu5, Nanpring Williams5, Adesola Ogunleye5, Ibrahima Soce Fall6, Michel Yao6, Womi-Eteng Eteng5, Patrick Abok6, Michael Popoola5, Martin Chukwuji7, Linda Haj Omar6, Eme Ekeng5, Thieno Balde6, Ibrahim Mamadu7, Ayodele Adeyemo8, Geoffrey Namara7, Ifeanyi Okudo7, Wondimagegnehu Alemu7, Clement Peter7, Chikwe Ihekweazu5.
Abstract
BACKGROUND: The cholera outbreak in 2018 in Nigeria reaffirms its public health threat to the country. Evidence on the current epidemiology of cholera required for the design and implementation of appropriate interventions towards attaining the global roadmap strategic goals for cholera elimination however seems lacking. Thus, this study aimed at addressing this gap by describing the epidemiology of the 2018 cholera outbreak in Nigeria.Entities:
Keywords: Attack rate; Case fatality rate; Cholera; Global roadmap; Multi-sectoral; Nigeria; Outbreak
Mesh:
Year: 2019 PMID: 31519163 PMCID: PMC6743111 DOI: 10.1186/s12889-019-7559-6
Source DB: PubMed Journal: BMC Public Health ISSN: 1471-2458 Impact factor: 3.295
Fig. 1The Selection Process of Study Records, January 1st-November 19th, 2018
Definition of key study variables
| Variable | Definition |
|---|---|
| Epidemiological week | The first epidemiological week [herein: week] was defined as the week ending on the first Saturday of January 2018; subsequent weeks however began on Sunday and ended on Saturday. The current study covered week 1 to 47 out of the 52 weeks. |
| Epidemiological wave | In line with 2018 epidemiological weeks and a previous study [ |
| Age | Age was defined in years and presented as a categorical variable. |
| Season | Dry season was defined as the period between week 1 and 12 and week 45 to 47, while rainy season was defined as the period between week 13 and 44. |
| Time to health seeking | This was defined as the difference between the reported date of health seeking and reported date of illness onset. It was classified as a categorical variable: same day, 1–2 days, and more than 2 days. |
| Location health care was sought | This was defined as primary healthcare centre, secondary hospital, tertiary hospital, cholera treatment centre (in any of the aforementioned health facilities), private clinic, and home. Information for its classification was validated by the DSNOs or State Epidemiologists of each affected state. |
| Outbreak setting | The affected LGAs were classified as rural, peri-urban or urban, using criteria of the population division of the United Nations which classifies an urban area as a settlement with 20,000 or more inhabitants, of which 75% or more are engaged in work other than agriculture, and a rural area as a settlement with fewer than 20,000 inhabitants whose primary occupation is agriculture. However, in the absence of a standard classification scheme, we classified a peri-urban area as a transition zone that is neither urban nor rural in the traditional sense. The provisional classifications were then validated using the respective state DSNOs’ or Epidemiologists’ final classifications. |
| Hospitalization | Hospitalization was defined as the admission of a cholera case to a formal health facility for at least one night. |
| Cholera death | Cholera death was defined as death of an individual classified as having cholera case in line with the case definition in the NCDC guidelines. |
| Attack Rate (AR) | AR was defined as the ratio of cholera cases in a defined area (e.g. state) to the estimated population of that area. AR for each reporting state was calculated using the estimated population of 2018, which was based on a 3.3% projected growth rate from the 2006 national census results; the values were multiplied by 100,000 for easier interpretation of small values. |
| Case Fatality Rate (CFR) | CFR was defined as the ratio of individuals classified as cholera cases who die to all those classified as cholera cases (alive and dead). CFR was expressed in percentage (%). |
Fig. 2Reported cholera cases and deaths by epidemiological week, wk01–47, 2018
Fig. 3Spatial distribution of cholera in terms of attack rates (a) and case fatality rates (b). Map generated using QGIS version 3.2.3 software
Baseline characteristics of cases during the 2018 cholera outbreak in Nigeria (N = 43,996)
| Baseline characteristic | Frequency (%) |
|---|---|
| Sociodemographic characteristic | |
| Sex | |
| Female | 22,322 (50.74) |
| Male | 21,674 (49.26) |
| Median (IQR) age, yearsa | 14 (5–30) |
| Age, years | |
| < 2 | 2602 (5.91) |
| 2–4 | 7651 (17.39) |
| 5–10 | 8068 (18.34) |
| 10–14 | 3300 (7.50) |
| > 15 | 21,014 (47.76) |
| Missing | 1361 (3.09) |
| Geopolitical zone | |
| South-east | 205 (0.47) |
| North-central | 1335 (3.03) |
| North-west | 19,850 (45.12) |
| North-east | 22,606 (51.38) |
| Epidemiological wave | |
| First wave (week 1–9 of 2018) | 1119 (2.54) |
| Second wave (week 10–28 of 2018) | 17,528 (39.84) |
| Third wave (week 29–34 of 2018) | 7454 (16.94) |
| Fourth wave (week 35–47 of 2018) | 17,895 (40.67) |
| Season | |
| Dry | 2427 (5.52) |
| Rainy | 41,569 (94.48) |
| Outbreak setting | |
| Rural | 15,501 (35.23) |
| Peri-urban | 5941 (13.50) |
| Urban | 22,077 (50.18) |
| Missing | 477 (1.08) |
| Clinical characteristic | |
| Time to healthcare seeking | |
| Same day | 27,470 (62.44) |
| 1–2 days | 10,159 (23.09) |
| > 2 days | 1695 (3.85) |
| Missing | 4672 (10.62) |
| Location healthcare was sought | |
| Primary healthcare centre | 8464 (19.24) |
| Secondary hospital | 6294 (14.31) |
| Tertiary hospital | 58 (0.13) |
| Private clinic | 143 (0.33) |
| Cholera treatment centre (including IDP camps) | 730 (1.66) |
| Home | 9 (0.02) |
| Missing | 28,298 (64.32) |
| Hospitalisation | |
| No | 6096 (13.86) |
| Yes | 20,224 (45.97) |
| Missing | 17,676 (40.18) |
| Stool sample collected for microbial test | |
| No | 21,597 (49.09) |
| Yes | 1139 (2.59) |
| Missing | 21,260 (48.32) |
| Stool sample tested for | |
| No | 42,928 (97.57) |
| Yes | 1068 (2.43) |
| Rapid diagnostic test outcome | |
| Negative | 205 (0.47) |
| Positive | 888 (2.02) |
| Pending | 3 (0.01) |
| Unknown | 42,900 (97.51) |
| Culture outcome | |
| Negative | 41 (0.09) |
| Positive | 92 (0.21) |
| Pending | 4 (0.01) |
| Unknown | 43,859 (99.69) |
| Clinical outcome | |
| Alive | 43,160 (98.10) |
| Died | 836 (1.90) |
aIQR Interquartile range
Distribution of cholera attack rates and case fatality rates by state, Nigeria, 2018
| State | Projected 2018 population | Cases | Deaths | Attack rate/100,000 population | CFR (%) |
|---|---|---|---|---|---|
| Adamawa | 4,464,609.877 | 2748 | 41 | 61.55 | 1.50 |
| Anambra | 5,825,118.003 | 23 | 1 | 0.40 | 4.35 |
| Bauchi | 6,984,963.699 | 9405 | 35 | 134.65 | 0.37 |
| Borno | 6,200,395.472 | 7626 | 74 | 123.00 | 0.97 |
| Ebonyi | 3,027,451.68 | 182 | 7 | 6.01 | 3.85 |
| FCTa | 4,084,890.258 | 221 | 14 | 5.41 | 6.33 |
| Gombe | 3,435,108.839 | 552 | 18 | 16.07 | 3.26 |
| Jigawa | 6,128,283.561 | 15 | 1 | 0.24 | 6.67 |
| Kaduna | 8,649,466.817 | 401 | 25 | 4.64 | 6.23 |
| Kano | 13,854,062.42 | 1905 | 73 | 13.75 | 3.83 |
| Katsina | 8,258,831.146 | 7400 | 190 | 89.60 | 2.57 |
| Kebbi | 4,671,593.545 | 198 | 7 | 4.24 | 3.54 |
| Kogi | 4,674,338.533 | 102 | 8 | 2.18 | 7.84 |
| Kwara | 3,380,605.955 | 10 | 0 | 0.30 | 0.00 |
| Nasarawa | 2,656,584.616 | 71 | 5 | 2.67 | 7.04 |
| Niger | 5,900,257.11 | 584 | 29 | 9.90 | 4.97 |
| Plateau | 4,376,193.378 | 347 | 6 | 7.93 | 1.73 |
| Sokoto | 5,271,036.573 | 1602 | 84 | 30.40 | 5.24 |
| Yobe | 3,508,083.395 | 2275 | 83 | 64.85 | 3.65 |
| Zamfara | 4,757,222.358 | 8329 | 135 | 175.08 | 1.62 |
| Total | 34,524,321.92 | 43,996 | 836 | 127.43 | 1.90 |
a Federal Capital Territory of Nigeria (Abuja)
Distribution of cholera cases by epidemiological wave, Nigeria, 2018
| Characteristic | Epidemiological wave | ||||
|---|---|---|---|---|---|
| First wave | Second wave | Third wave | Fourth wave | Total | |
| Age (years) | |||||
| < 5 | 386 (34.50) | 4551 (25.96) | 1422 (19.08) | 3899 (21.79) | 10,258 (23.32) |
| ≥ 5 | 731 (65.33) | 12,955 (73.91) | 5744 (77.06) | 12,947 (72.35) | 32,377 (73.59) |
| Missing | 2 (0.18) | 22 (0.13) | 288 (3.86) | 1049 (5.86)† | 1361 (3.09) |
| Sex | |||||
| Female | 567 (50.67) | 8782 (50.10) | 3773 (50.62) | 9200 (51.41) | 22,322 (50.74) |
| Male | 552 (49.33) | 8746 (49.90) | 3681 (49.38) | 8695 (48.59)NS | 21,674 (49.26) |
| Geo-political zone | |||||
| South-east | 3 (0.27) | 188 (1.07) | 14 (0.19) | 0 (0.00) | 205 (0.47) |
| North-central | 3 (0.27) | 1083 (6.18) | 158 (2.12) | 91 (0.51) | 1335 (3.03) |
| North-west | 239 (21.36) | 3885 (22.16) | 6475 (86.87) | 9251 (51.70) | 19,850 (45.12) |
| North-east | 874 (78.11) | 12,372 (70.58) | 807 (10.83) | 8553 (47.80)† | 22,606 (51.38) |
| Season | |||||
| Rainy | 0 (0.00) | 997 (5.69) | 7454 (100.00) | 311 (1.74) | 2427 (5.52) |
| Dry | 1119 (100.00) | 16,531 (94.31) | 0 (0.00) | 17,584 (98.26)† | 41,569 (94.48) |
| Outbreak setting | |||||
| Rural | 887 (79.27) | 3073 (17.53) | 4093 (54.91) | 7448 (41.62) | 15,501 (35.23) |
| Peri-urban | 53 (4.74) | 918 (5.24) | 1333 (17.88) | 3637 (20.32) | 5941 (13.50) |
| Urban | 146 (13.05) | 13,464 (76.81) | 1985 (26.63) | 6482 (36.22) | 22,077 (50.18) |
| Missing | 33 (2.95) | 73 (0.42) | 43 (0.58) | 328 (1.83)† | 477 (1.08) |
| Location care was sought | |||||
| Primary healthcare centre | 52 (4.65) | 656 (3.74) | 2118 (28.41) | 5638 (31.51) | 8464 (19.24) |
| Secondary hospital | 7 (0.63) | 5219 (29.78) | 390 (5.23) | 678 (3.79) | 6294 (14.31) |
| Tertiary hospital | 1 (0.09) | 8 (0.05) | 14 (0.19) | 35 (0.20) | 58 (0.13) |
| Private clinic | 0 (0.00) | 107 (0.61) | 29 (0.39) | 7 (0.04) | 143 (0.33) |
| Cholera treatment centre* | 0 (0.00) | 19 (0.11) | 28 (0.38) | 683 (3.82) | 730 (1.66) |
| Home | 0 (0.00) | 5 (0.03) | 3 (0.04) | 1 (0.01) | 9 (0.02) |
| Missing | 1059 (94.64) | 11,514 (65.69) | 4872 (65.36) | 10,853 (60.65)† | 28,298 (64.32) |
| Time to health seeking | |||||
| Same day | 862 (77.03) | 8118 (46.31) | 4691 (62.93) | 13,799 (77.11) | 27,470 (62.44) |
| 1–2 days | 50 (4.47) | 6597 (37.64) | 1622 (21.76) | 1890 (10.56) | 10,159 (23.09) |
| > 2 days | 62 (5.54) | 1252 (7.14) | 216 (2.90) | 165 (0.92) | 1695 (3.85) |
| Missing | 145 (12.96) | 1561 (8.91) | 925 (12.41) | 2041 (11.41)† | 4672 (10.62) |
| Hospitalised | |||||
| No | 53 (4.74) | 4418 (25.21) | 334 (4.48) | 1291 (7.21) | 6096 (13.86) |
| Yes | 81 (7.24) | 8884 (50.68) | 2073 (27.81) | 9186 (51.33) | 20,224 (45.97) |
| Missing | 985 (88.03) | 4226 (24.11) | 5047 (67.71) | 7418 (41.45)† | 17,676 (40.18) |
| Clinical outcome | |||||
| Alive | 1107 (98.93) | 17,295 (98.67) | 7158 (96.03) | 17,600 (98.35) | 43,160 (98.10) |
| Dead | 12 (1.07) | 233 (1.33) | 296 (3.97) | 295 (1.65)† | 836 (1.90) |
* Including Internally Displaced Persons’ camps
†p-value < 0.001; NS (Not Significant) =0.106; p-values cover the four epidemic waves