Literature DB >> 31515628

The Draft Genome Sequence of Methylophilus sp. D22, Capable of Growing Under High Concentration of Methanol.

Zhongxue Dai1, Feng Guo1, Jiangfeng Ma1,2, Weiliang Dong1,2, Jie Zhou1,2, Min Jiang3,4, Wenming Zhang5,6, Fengxue Xin7,8.   

Abstract

In this study, a wild type Methylophilus sp. strain D22 belonging to the family Methylophilus was isolated and characterized, which shows high tolerance towards methanol, as it can grow under 50 g/L of methanol. Methylophilus sp. strain D22 was isolated from the lake sludge in Nanjing Tech University, China. The assembled draft genome contains one circular chromosome with 3,004,398 bp, 49.7% of GC content, and 2107 predicted encoding proteins. Sequence-based genomic analysis demonstrates that the assimilation pathway of ribulose monophosphate (RuMP) pathway and dissimilation pathway of tetrahydromethanopterin (H4MPT) pathway are co-existing and contribute to the high methanol utilization efficiency.

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Year:  2019        PMID: 31515628     DOI: 10.1007/s00284-019-01765-x

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  18 in total

1.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

2.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

3.  Proteomic analysis of the thermophilic methylotroph Bacillus methanolicus MGA3.

Authors:  Jonas E N Müller; Boris Litsanov; Miriam Bortfeld-Miller; Christian Trachsel; Jonas Grossmann; Trygve Brautaset; Julia A Vorholt
Journal:  Proteomics       Date:  2014-02-20       Impact factor: 3.984

4.  Methylophilus glucosoxydans sp. nov., a restricted facultative methylotroph from rice rhizosphere.

Authors:  Nina V Doronina; Anna A Gogleva; Yuri A Trotsenko
Journal:  Int J Syst Evol Microbiol       Date:  2011-03-04       Impact factor: 2.747

5.  Complete genome sequence of Methylophilus sp. TWE2 isolated from methane oxidation enrichment culture of tap-water.

Authors:  Fei Xia; Bin Zou; Cong Shen; Ting Zhu; Xin-Hua Gao; Zhe-Xue Quan
Journal:  J Biotechnol       Date:  2015-08-04       Impact factor: 3.307

6.  First draft genome sequencing of indole acetic acid producing and plant growth promoting fungus Preussia sp. BSL10.

Authors:  Abdul Latif Khan; Sajjad Asaf; Abdur Rahim Khan; Ahmed Al-Harrasi; Ahmed Al-Rawahi; In-Jung Lee
Journal:  J Biotechnol       Date:  2016-03-16       Impact factor: 3.307

7.  Improvement of L-lysine production by Methylophilus methylotrophus from methanol via the Entner-Doudoroff pathway, originating in Escherichia coli.

Authors:  Kohei Ishikawa; Yoshiya Gunji; Hisashi Yasueda; Kozo Asano
Journal:  Biosci Biotechnol Biochem       Date:  2008-10-07       Impact factor: 2.043

8.  Heterologous expression of the human polybromo-1 protein in the methylotrophic yeast Pichia pastoris.

Authors:  Sarah E Hopson; Martin J Thompson
Journal:  Protein Expr Purif       Date:  2018-07-18       Impact factor: 1.650

9.  Draft Genome Sequence of Methanol-Utilizing Methylophilus sp. Strain OH31, Isolated from Pond Sediment in Hokkaido, Japan.

Authors:  Takahiro Kugo; Wataru Kitagawa; Yoshinori Shimomura; Takuya Yamagishi; Michiko Tanaka; Teruo Sone; Kozo Asano; Yoichi Kamagata
Journal:  Genome Announc       Date:  2014-04-10

10.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

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