Literature DB >> 31512145

ZIKAVID-Zika virus infection database: a new platform to analyze the molecular impact of Zika virus infection.

Rafael L Rosa1,2, Lucélia Santi1,2, Markus Berger2, Emanuela F Tureta1, André Quincozes-Santos3, Diogo O Souza3, Jorge A Guimarães2, Walter O Beys-da-Silva4,5.   

Abstract

The recent outbreak of Zika virus (ZIKV) in Brazil and other countries globally demonstrated the relevance of ZIKV studies. During and after this outbreak, there was an intense increase in scientific production on ZIKV infections, especially toward alterations promoted by the infection and related to clinical outcomes. Considering this massive amount of new data, mainly thousands of genes and proteins whose expression is impacted by ZIKV infection, the ZIKA Virus Infection Database (ZIKAVID) was created. ZIKAVID is an online database that comprises all genes or proteins, and associated information, for which expression was experimentally measured and found to be altered after ZIKV infection. The database, available at https://zikavid.org, contains 16,984 entries of gene expression measurements from a total of 7348 genes. It allows users to easily perform searches for different experimental hosts (cell lines, tissues, and animal models), ZIKV strains (African, Asian, and Brazilian), and target molecules (messenger RNA [mRNA] and protein), among others, used in differential expression studies regarding ZIKV infection. In this way, the ZIKAVID will serve as an additional and important resource to improve the characterization of the molecular impact and pathogenesis associated with ZIKV infection.

Entities:  

Keywords:  Database; Host; Strains; Zika virus

Mesh:

Year:  2019        PMID: 31512145     DOI: 10.1007/s13365-019-00799-y

Source DB:  PubMed          Journal:  J Neurovirol        ISSN: 1355-0284            Impact factor:   3.739


  38 in total

1.  ZIKA Virus and Neuroscience: the Need for a Translational Collaboration.

Authors:  Lavínia Schuler-Faccini; Paulo Roehe; Eduardo R Zimmer; André Quincozes-Santos; Adriano M de Assis; Elizabeth Obino Cirne Lima; Jorge Almeida Guimarães; Cesar Victora; Vivaldo Moura Neto; Diogo O Souza
Journal:  Mol Neurobiol       Date:  2017-02-09       Impact factor: 5.590

Review 2.  Emerging avian influenza infections: Current understanding of innate immune response and molecular pathogenesis.

Authors:  Anamika Mishra; Periyasamy Vijayakumar; Ashwin Ashok Raut
Journal:  Int Rev Immunol       Date:  2017-03-08       Impact factor: 5.311

3.  Detection and sequencing of Zika virus from amniotic fluid of fetuses with microcephaly in Brazil: a case study.

Authors:  Guilherme Calvet; Renato S Aguiar; Adriana S O Melo; Simone A Sampaio; Ivano de Filippis; Allison Fabri; Eliane S M Araujo; Patricia C de Sequeira; Marcos C L de Mendonça; Louisi de Oliveira; Diogo A Tschoeke; Carlos G Schrago; Fabiano L Thompson; Patricia Brasil; Flavia B Dos Santos; Rita M R Nogueira; Amilcar Tanuri; Ana M B de Filippis
Journal:  Lancet Infect Dis       Date:  2016-02-18       Impact factor: 25.071

4.  Zika Virus Targets Different Primary Human Placental Cells, Suggesting Two Routes for Vertical Transmission.

Authors:  Takako Tabata; Matthew Petitt; Henry Puerta-Guardo; Daniela Michlmayr; Chunling Wang; June Fang-Hoover; Eva Harris; Lenore Pereira
Journal:  Cell Host Microbe       Date:  2016-07-18       Impact factor: 21.023

5.  Zika Virus Infection of Human Mesenchymal Stem Cells Promotes Differential Expression of Proteins Linked to Several Neurological Diseases.

Authors:  Walter O Beys-da-Silva; Rafael L Rosa; Lucélia Santi; Markus Berger; Sung Kyu Park; Alexandre R Campos; Paula Terraciano; Ana Paula M Varela; Thais F Teixeira; Paulo M Roehe; André Quincozes-Santos; John R Yates; Diogo O Souza; Elizabeth O Cirne-Lima; Jorge A Guimarães
Journal:  Mol Neurobiol       Date:  2018-10-30       Impact factor: 5.590

6.  Zika Virus Targets Human STAT2 to Inhibit Type I Interferon Signaling.

Authors:  Alesha Grant; Sanket S Ponia; Shashank Tripathi; Vinod Balasubramaniam; Lisa Miorin; Marion Sourisseau; Megan C Schwarz; Mari Paz Sánchez-Seco; Matthew J Evans; Sonja M Best; Adolfo García-Sastre
Journal:  Cell Host Microbe       Date:  2016-05-19       Impact factor: 21.023

7.  ViralZone: a knowledge resource to understand virus diversity.

Authors:  Chantal Hulo; Edouard de Castro; Patrick Masson; Lydie Bougueleret; Amos Bairoch; Ioannis Xenarios; Philippe Le Mercier
Journal:  Nucleic Acids Res       Date:  2010-10-14       Impact factor: 16.971

8.  ViPR: an open bioinformatics database and analysis resource for virology research.

Authors:  Brett E Pickett; Eva L Sadat; Yun Zhang; Jyothi M Noronha; R Burke Squires; Victoria Hunt; Mengya Liu; Sanjeev Kumar; Sam Zaremba; Zhiping Gu; Liwei Zhou; Christopher N Larson; Jonathan Dietrich; Edward B Klem; Richard H Scheuermann
Journal:  Nucleic Acids Res       Date:  2011-10-17       Impact factor: 16.971

9.  Differential Expression Profile of lncRNAs from Primary Human Hepatocytes Following DEET and Fipronil Exposure.

Authors:  Robert D Mitchell; Andrew D Wallace; Ernest Hodgson; R Michael Roe
Journal:  Int J Mol Sci       Date:  2017-10-07       Impact factor: 5.923

Review 10.  The Asian Lineage of Zika Virus: Transmission and Evolution in Asia and the Americas.

Authors:  Tao Hu; Juan Li; Michael J Carr; Sebastián Duchêne; Weifeng Shi
Journal:  Virol Sin       Date:  2019-01-25       Impact factor: 4.327

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  2 in total

1.  SARSCOVIDB-A New Platform for the Analysis of the Molecular Impact of SARS-CoV-2 Viral Infection.

Authors:  Rafael Lopes da Rosa; Tung Sheng Yang; Emanuela Fernanda Tureta; Laura Rascovetzki Saciloto de Oliveira; Amanda Naiara Silva Moraes; Juliana Miranda Tatara; Renata Pereira Costa; Júlia Spier Borges; Camila Innocente Alves; Markus Berger; Jorge Almeida Guimarães; Lucélia Santi; Walter Orlando Beys-da-Silva
Journal:  ACS Omega       Date:  2021-01-21

Review 2.  Neurodevelopment in Children Exposed to Zika in utero: Clinical and Molecular Aspects.

Authors:  Lavínia Schuler-Faccini; Miguel Del Campo; Alfredo García-Alix; Liana O Ventura; Juliano André Boquett; Vanessa van der Linden; André Pessoa; Hélio van der Linden Júnior; Camila V Ventura; Mariana Carvalho Leal; Thayne Woycinck Kowalski; Lais Rodrigues Gerzson; Carla Skilhan de Almeida; Lucélia Santi; Walter O Beys-da-Silva; André Quincozes-Santos; Jorge A Guimarães; Patricia P Garcez; Julia do Amaral Gomes; Fernanda Sales Luiz Vianna; André Anjos da Silva; Lucas Rosa Fraga; Maria Teresa Vieira Sanseverino; Alysson R Muotri; Rafael Lopes da Rosa; Alberto Mantovani Abeche; Clairton Marcolongo-Pereira; Diogo O Souza
Journal:  Front Genet       Date:  2022-03-08       Impact factor: 4.599

  2 in total

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