Literature DB >> 31511872

Post-transcriptional regulation of inflammation by RNA-binding proteins via cis-elements of mRNAs.

Yutaro Uchida1, Tomoki Chiba1, Ryota Kurimoto1, Hiroshi Asahara1.   

Abstract

In human genome, there are approximately 1,500 RNA-binding proteins (RBPs). They can regulate mRNA stability or translational efficiency via ribosomes and these processes are known as 'post-transcriptional regulation'. Accumulating evidences indicate that post-transcriptional regulation is the determinant of the accurate levels of cytokines mRNAs. While transcriptional regulation of cytokines mRNAs has been well studied and found to be important for the rapid induction of mRNA and regulation of the acute phase of inflammation, post-transcriptional regulation by RBPs is essential for resolving inflammation in the later phase, and their dysfunction may lead to severe autoimmune diseases such as rheumatoid arthritis or systemic lupus erythematosus. For post-transcriptional regulation, RBPs recognize and directly bind to cis-regulatory elements in 3' untranslated region of mRNAs such as AU-rich or constitutive decay elements and play various roles. In this review, we summarize the recent findings regarding the role of RBPs in the regulation of inflammation.
© The Author(s) 2019. Published by Oxford University Press on behalf of the Japanese Biochemical Society. All rights reserved.

Entities:  

Keywords:  RNA-binding protein; chronic inflammation; cis-regulatory element; post-transcriptional regulation; translation

Mesh:

Substances:

Year:  2019        PMID: 31511872      PMCID: PMC6804641          DOI: 10.1093/jb/mvz067

Source DB:  PubMed          Journal:  J Biochem        ISSN: 0021-924X            Impact factor:   3.387


  73 in total

1.  Overexpression of HuR, a nuclear-cytoplasmic shuttling protein, increases the in vivo stability of ARE-containing mRNAs.

Authors:  X C Fan; J A Steitz
Journal:  EMBO J       Date:  1998-06-15       Impact factor: 11.598

2.  RNA stabilization by the AU-rich element binding protein, HuR, an ELAV protein.

Authors:  S S Peng; C Y Chen; N Xu; A B Shyu
Journal:  EMBO J       Date:  1998-06-15       Impact factor: 11.598

3.  Structure and genomic organization of the human AUF1 gene: alternative pre-mRNA splicing generates four protein isoforms.

Authors:  B J Wagner; C T DeMaria; Y Sun; G M Wilson; G Brewer
Journal:  Genomics       Date:  1998-03-01       Impact factor: 5.736

4.  Stabilization of urokinase and urokinase receptor mRNAs by HuR is linked to its cytoplasmic accumulation induced by activated mitogen-activated protein kinase-activated protein kinase 2.

Authors:  Hoanh Tran; Fabienne Maurer; Yoshikuni Nagamine
Journal:  Mol Cell Biol       Date:  2003-10       Impact factor: 4.272

5.  HuR is required for IL-17-induced Act1-mediated CXCL1 and CXCL5 mRNA stabilization.

Authors:  Tomasz Herjan; Peng Yao; Wen Qian; Xiao Li; Caini Liu; Katarzyna Bulek; Dongxu Sun; Wen-Pin Yang; Jun Zhu; Aiqing He; Julie A Carman; Serpil C Erzurum; Howard D Lipshitz; Paul L Fox; Thomas A Hamilton; Xiaoxia Li
Journal:  J Immunol       Date:  2013-06-14       Impact factor: 5.422

6.  Posttranscriptional gene regulation of IL-17 by the RNA-binding protein HuR is required for initiation of experimental autoimmune encephalomyelitis.

Authors:  Jing Chen; Jason Cascio; Joseph D Magee; Patsharaporn Techasintana; Matthew M Gubin; Garrett M Dahm; Robert Calaluce; Shiguang Yu; Ulus Atasoy
Journal:  J Immunol       Date:  2013-10-28       Impact factor: 5.422

7.  Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability.

Authors:  Neelanjan Mukherjee; David L Corcoran; Jeffrey D Nusbaum; David W Reid; Stoyan Georgiev; Markus Hafner; Manuel Ascano; Thomas Tuschl; Uwe Ohler; Jack D Keene
Journal:  Mol Cell       Date:  2011-06-30       Impact factor: 17.970

8.  Arid5a cooperates with Sox9 to stimulate chondrocyte-specific transcription.

Authors:  Katsuhiko Amano; Kenji Hata; Shuji Muramatsu; Makoto Wakabayashi; Yoko Takigawa; Koichiro Ono; Masako Nakanishi; Rikako Takashima; Mikihiko Kogo; Akio Matsuda; Riko Nishimura; Toshiyuki Yoneda
Journal:  Mol Biol Cell       Date:  2011-02-23       Impact factor: 4.138

9.  TLR4-induced NF-κB and MAPK signaling regulate the IL-6 mRNA stabilizing protein Arid5a.

Authors:  Kishan K Nyati; Kazuya Masuda; Mohammad Mahabub-Uz Zaman; Praveen K Dubey; David Millrine; Jaya P Chalise; Mitsuru Higa; Songling Li; Daron M Standley; Kazunobu Saito; Hamza Hanieh; Tadamitsu Kishimoto
Journal:  Nucleic Acids Res       Date:  2017-03-17       Impact factor: 16.971

10.  HITS-CLIP yields genome-wide insights into brain alternative RNA processing.

Authors:  Donny D Licatalosi; Aldo Mele; John J Fak; Jernej Ule; Melis Kayikci; Sung Wook Chi; Tyson A Clark; Anthony C Schweitzer; John E Blume; Xuning Wang; Jennifer C Darnell; Robert B Darnell
Journal:  Nature       Date:  2008-11-02       Impact factor: 49.962

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  11 in total

1.  CEP63 upregulates YAP1 to promote colorectal cancer progression through stabilizing RNA binding protein FXR1.

Authors:  Han Ling; Chen-Hui Cao; Kai Han; Yong-Rui Lv; Xiao-Dan Ma; Jing-Hua Cao; Jie-Wei Chen; Si Li; Jin-Long Lin; Yu-Jing Fang; Zhi-Zhong Pan; Dan Xie; Feng-Wei Wang
Journal:  Oncogene       Date:  2022-08-22       Impact factor: 8.756

Review 2.  Functional RNA Dynamics Are Progressively Governed by RNA Destabilization during the Adaptation to Chronic Hypoxia.

Authors:  Rebekka Bauer; Sofie Patrizia Meyer; Karolina Anna Kloss; Vanesa Maria Guerrero Ruiz; Samira Reuscher; You Zhou; Dominik Christian Fuhrmann; Kathi Zarnack; Tobias Schmid; Bernhard Brüne
Journal:  Int J Mol Sci       Date:  2022-05-22       Impact factor: 6.208

3.  Desmoglein-4 Deficiency Exacerbates Psoriasiform Dermatitis in Rats While Psoriasis Patients Displayed a Decreased Gene Expression of DSG4.

Authors:  Tamara Moreno-Sosa; María Belén Sánchez; Elisa Olivia Pietrobon; Juan Manuel Fernandez-Muñoz; Felipe Carlos Martín Zoppino; Flavia Judith Neira; María José Germanó; Diego Esteban Cargnelutti; Alicia Carolina Innocenti; Graciela Alma Jahn; Susana Ruth Valdez; Juan Pablo Mackern-Oberti
Journal:  Front Immunol       Date:  2021-04-29       Impact factor: 7.561

4.  Analysis of the nucleocytoplasmic shuttling RNA-binding protein HNRNPU using optimized HITS-CLIP method.

Authors:  Masato Yugami; Hideyuki Okano; Atsushi Nakanishi; Masato Yano
Journal:  PLoS One       Date:  2020-04-17       Impact factor: 3.240

Review 5.  tRNA-derived fragments: Mechanisms underlying their regulation of gene expression and potential applications as therapeutic targets in cancers and virus infections.

Authors:  Xiuchong Yu; Yaoyao Xie; Shuangshuang Zhang; Xuemei Song; Bingxiu Xiao; Zhilong Yan
Journal:  Theranostics       Date:  2021-01-01       Impact factor: 11.556

6.  RNA-Binding Protein HuR Suppresses Inflammation and Promotes Extracellular Matrix Homeostasis via NKRF in Intervertebral Disc Degeneration.

Authors:  Zhenxuan Shao; Zhuolong Tu; Yifeng Shi; Sunlong Li; Aimin Wu; Yaosen Wu; Naifeng Tian; Liaojun Sun; Zongyou Pan; Linwei Chen; Weiyang Gao; Yifei Zhou; Xiangyang Wang; Xiaolei Zhang
Journal:  Front Cell Dev Biol       Date:  2020-11-25

7.  A Novel Prognostic Model for Oral Squamous Cell Carcinoma: The Functions and Prognostic Values of RNA-Binding Proteins.

Authors:  Yingjuan Lu; Yongcong Yan; Bowen Li; Mo Liu; Yancan Liang; Yushan Ye; Weiqi Cheng; Jinsong Li; Jiuyang Jiao; Shaohai Chang
Journal:  Front Oncol       Date:  2021-07-30       Impact factor: 6.244

8.  YB1 dephosphorylation attenuates atherosclerosis by promoting CCL2 mRNA decay.

Authors:  Yaqin Tang; Zhiwei Li; Hongqin Yang; Yang Yang; Chi Geng; Bin Liu; Tiantian Zhang; Siyang Liu; Yunfei Xue; Hongkai Zhang; Jing Wang; Hongmei Zhao
Journal:  Front Cardiovasc Med       Date:  2022-08-04

Review 9.  RNA binding proteins in osteoarthritis.

Authors:  Qian Yi; Zhenhan Deng; Jiaji Yue; Jinglong He; Jianyi Xiong; Wei Sun; Weichao Sun
Journal:  Front Cell Dev Biol       Date:  2022-08-08

10.  GUSBP11 Inhibited The Progression of Triple Negative Breast Cancer via Targeting The miR-579-3p/SPNS2 Axis.

Authors:  Guangbin Wu; Peilong Sun; Chunzhi Qin
Journal:  Cell J       Date:  2022-04-27       Impact factor: 3.128

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