Literature DB >> 31506041

Information processing by endoplasmic reticulum stress sensors.

Wylie Stroberg1, Justin Eilertsen1, Santiago Schnell1,2.   

Abstract

The unfolded protein response (UPR) is a collection of cellular feedback mechanisms that seek to maintain protein folding homeostasis in the endoplasmic reticulum (ER). When the ER is 'stressed', through either high protein folding demand or undersupply of chaperones and foldases, stress sensing proteins in the ER membrane initiate the UPR. Recently, experiments have indicated that these signalling molecules detect stress by being both sequestered by free chaperones and activated by free unfolded proteins. However, it remains unclear what advantage this bidirectional sensor control offers stressed cells. Here, we show that combining positive regulation of sensor activity by unfolded proteins with negative regulation by chaperones allows the sensor to make a more informative measurement of ER stress. The increase in the information capacity of the combined sensing mechanism stems from stretching of the active range of the sensor, at the cost of increased uncertainty due to the integration of multiple signals. These results provide a possible rationale for the evolution of the observed stress-sensing mechanism.

Keywords:  chemical sensing; endoplasmic reticulum stress; mutual information; signal integration; unfolded protein response

Mesh:

Year:  2019        PMID: 31506041      PMCID: PMC6769313          DOI: 10.1098/rsif.2019.0288

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  38 in total

1.  Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation.

Authors:  K J Travers; C K Patil; L Wodicka; D J Lockhart; J S Weissman; P Walter
Journal:  Cell       Date:  2000-04-28       Impact factor: 41.582

2.  Information flow and optimization in transcriptional regulation.

Authors:  Gasper Tkacik; Curtis G Callan; William Bialek
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-21       Impact factor: 11.205

Review 3.  ER stress and the unfolded protein response in neurodegeneration.

Authors:  Claudio Hetz; Smita Saxena
Journal:  Nat Rev Neurol       Date:  2017-07-21       Impact factor: 42.937

4.  Analysis in vivo of GRP78-BiP/substrate interactions and their role in induction of the GRP78-BiP gene.

Authors:  D T Ng; S S Watowich; R A Lamb
Journal:  Mol Biol Cell       Date:  1992-02       Impact factor: 4.138

5.  Unfolded proteins are Ire1-activating ligands that directly induce the unfolded protein response.

Authors:  Brooke M Gardner; Peter Walter
Journal:  Science       Date:  2011-08-18       Impact factor: 47.728

6.  BiP binding to the ER-stress sensor Ire1 tunes the homeostatic behavior of the unfolded protein response.

Authors:  David Pincus; Michael W Chevalier; Tomás Aragón; Eelco van Anken; Simon E Vidal; Hana El-Samad; Peter Walter
Journal:  PLoS Biol       Date:  2010-07-06       Impact factor: 8.029

7.  A model of the unfolded protein response: pancreatic beta-cell as a case study.

Authors:  Santiago Schnell
Journal:  Cell Physiol Biochem       Date:  2009-05-06

8.  Two regulatory steps of ER-stress sensor Ire1 involving its cluster formation and interaction with unfolded proteins.

Authors:  Yukio Kimata; Yuki Ishiwata-Kimata; Tatsuhiko Ito; Aiko Hirata; Tomohide Suzuki; Daisuke Oikawa; Masato Takeuchi; Kenji Kohno
Journal:  J Cell Biol       Date:  2007-10-08       Impact factor: 10.539

9.  How to design an optimal sensor network for the unfolded protein response.

Authors:  Wylie Stroberg; Hadar Aktin; Yonatan Savir; Santiago Schnell
Journal:  Mol Biol Cell       Date:  2018-09-26       Impact factor: 4.138

10.  The unfolded protein response signals through high-order assembly of Ire1.

Authors:  Alexei V Korennykh; Pascal F Egea; Andrei A Korostelev; Janet Finer-Moore; Chao Zhang; Kevan M Shokat; Robert M Stroud; Peter Walter
Journal:  Nature       Date:  2008-12-14       Impact factor: 49.962

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  1 in total

Review 1.  The endoplasmic reticulum unfolded protein response - homeostasis, cell death and evolution in virus infections.

Authors:  Vibhu Prasad; Urs F Greber
Journal:  FEMS Microbiol Rev       Date:  2021-09-08       Impact factor: 16.408

  1 in total

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