Literature DB >> 31495782

Cohesin Members Stag1 and Stag2 Display Distinct Roles in Chromatin Accessibility and Topological Control of HSC Self-Renewal and Differentiation.

Aaron D Viny1, Robert L Bowman2, Yu Liu3, Vincent-Philippe Lavallée4, Shira E Eisman2, Wenbin Xiao5, Benjamin H Durham5, Anastasia Navitski2, Jane Park6, Stephanie Braunstein2, Besmira Alija2, Abdul Karzai2, Isabelle S Csete2, Matthew Witkin6, Elham Azizi4, Timour Baslan7, Christopher J Ott8, Dana Pe'er4, Job Dekker9, Richard Koche6, Ross L Levine10.   

Abstract

Transcriptional regulators, including the cohesin complex member STAG2, are recurrently mutated in cancer. The role of STAG2 in gene regulation, hematopoiesis, and tumor suppression remains unresolved. We show that Stag2 deletion in hematopoietic stem and progenitor cells (HSPCs) results in altered hematopoietic function, increased self-renewal, and impaired differentiation. Chromatin immunoprecipitation (ChIP) sequencing revealed that, although Stag2 and Stag1 bind a shared set of genomic loci, a component of Stag2 binding sites is unoccupied by Stag1, even in Stag2-deficient HSPCs. Although concurrent loss of Stag2 and Stag1 abrogated hematopoiesis, Stag2 loss alone decreased chromatin accessibility and transcription of lineage-specification genes, including Ebf1 and Pax5, leading to increased self-renewal and reduced HSPC commitment to the B cell lineage. Our data illustrate a role for Stag2 in transformation and transcriptional dysregulation distinct from its shared role with Stag1 in chromosomal segregation.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Cohesin; Stag1; Stag2; chromatin; hematopoietic stem cells; mouse models; myelodysplasia; nuclear topology

Mesh:

Substances:

Year:  2019        PMID: 31495782      PMCID: PMC6842438          DOI: 10.1016/j.stem.2019.08.003

Source DB:  PubMed          Journal:  Cell Stem Cell        ISSN: 1875-9777            Impact factor:   24.633


  73 in total

1.  Cohesins functionally associate with CTCF on mammalian chromosome arms.

Authors:  Vania Parelho; Suzana Hadjur; Mikhail Spivakov; Marion Leleu; Stephan Sauer; Heather C Gregson; Adam Jarmuz; Claudia Canzonetta; Zoe Webster; Tatyana Nesterova; Bradley S Cobb; Kyoko Yokomori; Niall Dillon; Luis Aragon; Amanda G Fisher; Matthias Merkenschlager
Journal:  Cell       Date:  2008-01-31       Impact factor: 41.582

2.  Cohesin Loss Eliminates All Loop Domains.

Authors:  Suhas S P Rao; Su-Chen Huang; Brian Glenn St Hilaire; Jesse M Engreitz; Elizabeth M Perez; Kyong-Rim Kieffer-Kwon; Adrian L Sanborn; Sarah E Johnstone; Gavin D Bascom; Ivan D Bochkov; Xingfan Huang; Muhammad S Shamim; Jaeweon Shin; Douglass Turner; Ziyi Ye; Arina D Omer; James T Robinson; Tamar Schlick; Bradley E Bernstein; Rafael Casellas; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2017-10-05       Impact factor: 41.582

3.  FateID infers cell fate bias in multipotent progenitors from single-cell RNA-seq data.

Authors:  Josip S Herman; Dominic Grün
Journal:  Nat Methods       Date:  2018-04-09       Impact factor: 28.547

4.  Mutational inactivation of STAG2 causes aneuploidy in human cancer.

Authors:  David A Solomon; Taeyeon Kim; Laura A Diaz-Martinez; Joshlean Fair; Abdel G Elkahloun; Brent T Harris; Jeffrey A Toretsky; Steven A Rosenberg; Neerav Shukla; Marc Ladanyi; Yardena Samuels; C David James; Hongtao Yu; Jung-Sik Kim; Todd Waldman
Journal:  Science       Date:  2011-08-19       Impact factor: 47.728

5.  The monoclonal antibody TER-119 recognizes a molecule associated with glycophorin A and specifically marks the late stages of murine erythroid lineage.

Authors:  T Kina; K Ikuta; E Takayama; K Wada; A S Majumdar; I L Weissman; Y Katsura
Journal:  Br J Haematol       Date:  2000-05       Impact factor: 6.998

6.  miR-182 is largely dispensable for adaptive immunity: lack of correlation between expression and function.

Authors:  Joseph N Pucella; Wei-Feng Yen; Myoungjoo V Kim; Joris van der Veeken; Chong T Luo; Nicholas D Socci; Yukiko Naito; Ming O Li; Naoharu Iwai; Jayanta Chaudhuri
Journal:  J Immunol       Date:  2015-02-11       Impact factor: 5.422

7.  A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors:  Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2014-12-11       Impact factor: 41.582

8.  Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation.

Authors:  Houda Belaghzal; Job Dekker; Johan H Gibcus
Journal:  Methods       Date:  2017-04-18       Impact factor: 3.608

9.  Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Authors:  Erez Lieberman-Aiden; Nynke L van Berkum; Louise Williams; Maxim Imakaev; Tobias Ragoczy; Agnes Telling; Ido Amit; Bryan R Lajoie; Peter J Sabo; Michael O Dorschner; Richard Sandstrom; Bradley Bernstein; M A Bender; Mark Groudine; Andreas Gnirke; John Stamatoyannopoulos; Leonid A Mirny; Eric S Lander; Job Dekker
Journal:  Science       Date:  2009-10-09       Impact factor: 47.728

10.  Functional ramifications for the loss of P-selectin expression on hematopoietic and leukemic stem cells.

Authors:  Con Sullivan; Yaoyu Chen; Yi Shan; Yiguo Hu; Cong Peng; Haojian Zhang; Linghong Kong; Shaoguang Li
Journal:  PLoS One       Date:  2011-10-24       Impact factor: 3.240

View more
  39 in total

1.  Clonal hematopoiesis: mechanisms driving dominance of stem cell clones.

Authors:  Grant A Challen; Margaret A Goodell
Journal:  Blood       Date:  2020-10-01       Impact factor: 22.113

2.  Closing the loop on cohesin in hematopoiesis.

Authors:  Sridhar Rao
Journal:  Blood       Date:  2019-12-12       Impact factor: 22.113

Review 3.  Cohesin subunit RAD21: From biology to disease.

Authors:  Haizi Cheng; Nenggang Zhang; Debananda Pati
Journal:  Gene       Date:  2020-07-17       Impact factor: 3.688

4.  Combined Cohesin-RUNX1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes.

Authors:  Yotaro Ochi; Ayana Kon; Toyonori Sakata; Masahiro M Nakagawa; Naotaka Nakazawa; Masanori Kakuta; Keisuke Kataoka; Haruhiko Koseki; Manabu Nakayama; Daisuke Morishita; Tatsuaki Tsuruyama; Ryunosuke Saiki; Akinori Yoda; Rurika Okuda; Tetsuichi Yoshizato; Kenichi Yoshida; Yusuke Shiozawa; Yasuhito Nannya; Shinichi Kotani; Yasunori Kogure; Nobuyuki Kakiuchi; Tomomi Nishimura; Hideki Makishima; Luca Malcovati; Akihiko Yokoyama; Kengo Takeuchi; Eiji Sugihara; Taka-Aki Sato; Masashi Sanada; Akifumi Takaori-Kondo; Mario Cazzola; Mineko Kengaku; Satoru Miyano; Katsuhiko Shirahige; Hiroshi I Suzuki; Seishi Ogawa
Journal:  Cancer Discov       Date:  2020-04-05       Impact factor: 39.397

Review 5.  Emerging themes in cohesin cancer biology.

Authors:  Todd Waldman
Journal:  Nat Rev Cancer       Date:  2020-06-08       Impact factor: 60.716

Review 6.  CTCF-mediated genome organization and leukemogenesis.

Authors:  Yi Qiu; Suming Huang
Journal:  Leukemia       Date:  2020-06-09       Impact factor: 11.528

7.  Histone acetylation dynamics modulates chromatin conformation and allele-specific interactions at oncogenic loci.

Authors:  Stephanie Sungalee; Yuanlong Liu; Ruxandra A Lambuta; Natalya Katanayeva; Maria Donaldson Collier; Daniele Tavernari; Sandrine Roulland; Giovanni Ciriello; Elisa Oricchio
Journal:  Nat Genet       Date:  2021-05-10       Impact factor: 38.330

8.  A Robust Protocol for Investigating the Cohesin Complex by ChIP-Sequencing.

Authors:  Macarena Moronta Gines; Kerstin S Wendt
Journal:  Methods Mol Biol       Date:  2022

Review 9.  Determinants and role of chromatin organization in acute leukemia.

Authors:  Celestia Fang; Sridhar Rao; John D Crispino; Panagiotis Ntziachristos
Journal:  Leukemia       Date:  2020-07-20       Impact factor: 11.528

Review 10.  Deciphering the Complexity of 3D Chromatin Organization Driving Lymphopoiesis and Lymphoid Malignancies.

Authors:  Laurianne Scourzic; Eralda Salataj; Effie Apostolou
Journal:  Front Immunol       Date:  2021-05-14       Impact factor: 7.561

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.