| Literature DB >> 31488198 |
David Romero1, Jesús Olivero2, Raimundo Real2, José Carlos Guerrero3.
Abstract
BACKGROUND: Over the last decade, reports about dengue cases have increase worldwide, which is particularly worrisome in South America due to the historic record of dengue outbreaks from the seventeenth century until the first half of the twentieth century. Dengue is a viral disease that involves insect vectors, namely Aedes aegypti and Ae. albopictus, which implies that, to prevent and combat outbreaks, it is necessary to understand the set of ecological and biogeographical factors affecting both the vector species and the virus.Entities:
Keywords: Ae. albopictus; Aedes aegypti; Favorability function; Fuzzy operators; Vector-illness interaction
Mesh:
Year: 2019 PMID: 31488198 PMCID: PMC6727500 DOI: 10.1186/s13071-019-3691-5
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
Fig. 1Study area and distribution data: a the grid of 0.5° latitude × 0.5° longitude squares in which the study area was divided to represent the occurrence data; b occurrence data of vectors and dengue infection cases. The grid layer was created with the tool “Create grid” of the software QGIS (www.qgis.org). The country layer was obtained from https://www.naturalearthdata.com and licensed CC BY. The maps were developed using QGIS in the composer tool. The final composition was created using CorelDRAW X8
Explanatory variables used in Ae. aegypti, Ae. albopictus and dengue virus models in South America. Climate variables which do not have a pairwise correlation value above 0.80 according to Spearmanʼs test are shown in bolditalic
| Abbreviation | Variable | Abbreviation | Variable |
|---|---|---|---|
| SP | Spatial lineal combination ( | ||
| Topography | |||
| A | Mean altitude (m)b | S | Slope (◦) (calculated from altitude) |
| DA | Difference altitude (m) (calculated from altitude) | ON/S | Orientation N/S (calculated from slope) |
| Climatic variables | |||
| |
| BIO11 | Mean annual temperatures of the coldest quarter (°C)c |
| BIO2 | Mean diurnal range temperatures (°C)c |
|
|
| BIO3 | Isotermality (BIO2/BIO17)(*100) (°C)c | BIO13 | Precipitation of the wettest month (mm)c |
| BIO4 | Seasonal temperatures (°C)c | BIO14 | Precipitation of the driest month (mm)c |
| BIO5 | Maximum temperatures of the warmest month (°C)c |
|
|
| BIO6 | Minimum temperatures of the coldest month (°C)c | BIO16 | Precipitation of wettest quarter (mm)c |
| | BIO17 | Precipitation of dry quarterc | |
| BIO8 | Mean annual temperatures of the wetter quarterc |
|
|
| BIO9 | Mean annual temperatures of the dry quarterc |
|
|
| BIO10 | Mean annual temperatures of the warmest quarterc | ||
| Hydrology | |||
| DistRiver | Minimum distance to rivers (km)d | SumRiver | Sum of km of rivers per grid (km)d |
| Land use | |||
| Forests | Forests (%)e | Crops | Crops (%)e |
| NatField | Natural field (%)e | BareSoil | Bare soil (%)e |
| FlooVeg | Flooding vegetation (%)e | ||
| Human activities | |||
| PopDen | Population densityf | DistRoad | Minimum distance to paved roads (km)h |
| DistUrban | Minimum distance to urban centers (km)g | ||
aSpatial variables, latitude and longitude, were generated using QGIS (www.qgis.org) according to the vector geometry tools: (i) with “centroids of polygons” the centroid of each grid was calculated, and (ii) with “Export/Add columns of geometry” values of length and latitude expressed in the 1984 World Geodetic System were assigned to each centroid (WGS84). The spatial variable used in the multivariate modelling procedure is the linear polynomial combination (ysp) resulting from a spatial logistic regression
bUnited States Geological Survey. GTOPO30. Land Processes Distributed Active Archive Center. EROS Data Center, https://www.usgs.gov/centers/eros/science/usgs-eros-archive-digital-elevation-global-30-arc-second-elevation-gtopo30?qt-science_center_objects=0#qt-science_center_objects. 1996 (Accessed April 2016)
cWorldClim—Global Climate Data available. Described in: Fick, S. E. and R. J. Hijmans. Worldclim 2: New 1-km spatial resolution climate surfaces for global land areas. International Journal of Climatology. 2017. In: http://www.worldclim.org/ (Accessed May 2016)
dUnited States Geological Survey. HydroShed. Hydrological data and maps based on SHuttle Elevation Derivatives at multiple Scales. Available in: http://hydrosheds.cr.usgs.gov/index.php/ (Accessed May 2016)
eGlobCover 2009. Global land cover map. 2006. Avalaible at: http://due.esrin.esa.int/page_globcover.php (Accessed April 2016)
fGridded Population of the World (GPW), v4. Socioeconomic Data and Applications Center (SEDAC). A Data Center in NASA’s Earth Observing System Data and Information System (EOSDIS). Hosted by CIESIN at the Columbia University. 2010. (Accessed June 2016)
gNatural Earth Data. North American Cartographic Information Society (NACIS). Available at: http://www.naturalearthdata.com/ (Accessed April 2016)
hDiva-Gis 1.4, Plant Genetic Resources Newsletter. Available in: http://www.diva-gis.org/ (Accesed April 2016)
Predictor variables included in Ae. aegypti, Ae. albopictus and dengue cases favorability models. Signs in brackets show the positive or negative relationship between favorability and the variables in the models. The Wald parameter indicates the relative weight of every variable in each model. Variable abbreviations are given in Table 1
| Environmental factor |
| Wald |
| Wald | Dengue cases | Wald |
|---|---|---|---|---|---|---|
| Spatial situation | Sp | 1221.597 | Sp | 770.6308 | Sp | 252.8375 |
| Topography | A (−) | 15.03676 | A (+) | 30.7381 | ||
| O N/S (+) | 21.09944 | ON/S (+) | 65.61643 | ON/S (+) | 13.52308 | |
| S (+) | 11.75523 | S (+) | 8.108446 | |||
| Climatic | BIO1 (+) | 73.15295 | BIO1 (+) | 24.7797 | BIO1 (+) | 83.51969 |
| BIO7 (+) | 7.520641 | BIO7 (+) | 18.91607 | |||
| BIO12 (+) | 8.464809 | BIO12 (+) | 32.34416 | |||
| BIO15 (−) | 11.84533 | |||||
| BIO19 (−) | 17.86841 | BIO19 (−) | 25.6279 | |||
| Hydrology | SumRiver (−) | 10.33488 | ||||
| Land use | Crops (+) | 19.87312 | Crops (−) | 6.809295 | ||
| NatFields (−) | 6.809295 | |||||
| Human activities | PopDen (+) | 21.1916 | PopDen (+) | 7.74626 | PopDen (+) | 33.15417 |
| DistUrban (−) | 148.1178 | DistUrban (−) | 43.05502 | DistUrban (−) | 173.8293 | |
| DistRoad (−) | 7.287445 |
Fig. 2Favorability models of: a Aedes aegypti, b Ae. albopictus and c dengue cases. Favorable areas are shown in black (favorability values or F ≥ 0.8), grey (0.2 < F < 0.8) and white (F ≤ 0.2). The arrows show inclusion values between the different models, one into the other. The maps were developed using QGIS (www.qgis.org) in the composer tool. The final composition was created using CorelDRAW X8
Comparative assessment of models for Aedes aegypti, Ae. albopictus and dengue cases, as well as the fuzzy intersection between the vector species and dengue cases, according to their discrimination and classification capacity
| Evaluation indices | Favorability models | Vector-dengue favorability intersection | ||||
|---|---|---|---|---|---|---|
|
|
| Dengue cases | ||||
| Discrimination | ||||||
| AUC | 0.914 | 0.966 | 0.862 | 0.844 | 0.794 | |
| Classification | ||||||
| Sensitivity | 0.791 | 0.918 | 0.819 | 0.640 | 0.511 | |
| Specificity | 0.871 | 0.901 | 0.742 | 0.848 | 0.881 | |
| CCR | 0.850 | 0.903 | 0.751 | 0.824 | 0.839 | |
| Kappa | 0.630 | 0.682 | 0.312 | 0.358 | 0.329 | |
Abbreviations: AUC, area under the ROC (receiving operating characteristic) curve; CCR, correct classification rate
Fig. 3Plots and maps show the fuzzy intersection (simultaneous favorability) between the favorability for: a Ae. aegypti and dengue infection cases; and b favorability for Ae. albopictus and dengue infection cases. Fuzzy intersection values are shown on the horizontal axes (ranging from 0.1 to 1), grouped in 10 bins of values of equal favorability range. The average favorability values for both mosquito vectors in each bin are represented by solid lines and filled squares, and for dengue infection cases by dashed lines and blank circles, (on the left vertical axes ranging from 0 to 1). Columns represent the percentage of grid cells at each fuzzy intersection bin (on the right vertical axes). On maps, the arrows show inclusion values between both fuzzy intersection models (ranging from 0 to 1). The graphics were made using LibreOffice (https://es.libreoffice.org). The maps were developed using QGIS (www.qgis.org) in the composer tool. The final composition was created using CorelDRAW X8
Percentages of the country surface with intermediate and high risk (F > 0.2, and F ≥ 0.8, respectively) of both vectors (Aedes aegypti and Ae. albopictus), of dengue cases, and of vector-dengue favorability intersection (with respect to the total number of grid cells per country in the leftmost column). Countries were ordered from highest to lowest percentage of the country surface of dengue cases detected in Messina et al. [5]
| Country | Cells by country | % of risk for | % of risk for | % of risk for dengue cases | % of risk intersection F- | % of risk intersection F- | % of the country with dengue cases | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| F > 0.2 | F ≥ 0.8 | F > 0.2 | F ≥ 0.8 | F > 0.2 | F ≥ 0.8 | F > 0.2 | F ≥ 0.8 | F > 0.2 | F ≥ 0.8 | |||
| Brazil | 2860 | 84.056 | 42.343 | 58.776 | 33.741 | 69.720 | 16.049 | 67.552 | 15.839 | 53.497 | 14.196 | 16.958 |
| Colombia | 349 | 48.424 | 1.146 | 19.198 | 1.146 | 70.201 | 11.461 | 57.593 | 1.146 | 21.490 | 0.000 | 13.181 |
| Venezuela | 365 | 60.274 | 0.274 | 4.932 | 0.000 | 64.932 | 11.781 | 47.397 | 0.274 | 2.740 | 0.000 | 11.507 |
| Peru | 509 | 29.666 | 0.393 | 4.322 | 0.196 | 79.371 | 0.786 | 25.344 | 0.393 | 4.322 | 0.196 | 8.251 |
| Bolivia | 325 | 60.000 | 0.000 | 5.538 | 0.000 | 91.385 | 0.000 | 76.615 | 0.000 | 8.000 | 0.000 | 11.692 |
| Paraguay | 182 | 89.560 | 4.396 | 40.659 | 2.747 | 97.253 | 3.846 | 87.363 | 1.099 | 40.659 | 0.000 | 19.780 |
| Argentina | 1062 | 13.653 | 0.094 | 0.659 | 0.094 | 19.115 | 0.188 | 10.829 | 0.094 | 0.659 | 0.000 | 1.507 |
| Ecuador | 82 | 46.341 | 0.000 | 12.195 | 0.000 | 96.341 | 15.854 | 46.341 | 0.000 | 12.195 | 0.000 | 18.293 |
| French Guyana | 32 | 78.125 | 0.000 | 15.625 | 0.000 | 62.500 | 0.000 | 53.125 | 0.000 | 9.375 | 0.000 | 12.500 |
| Guyana | 72 | 58.333 | 0.000 | 4.167 | 0.000 | 58.333 | 1.389 | 61.111 | 0.000 | 5.556 | 0.000 | 5.556 |
| Surinam | 65 | 73.846 | 3.077 | 7.692 | 0.000 | 63.077 | 1.538 | 63.077 | 0.000 | 7.692 | 0.000 | 4.615 |
| Chile | 423 | 1.182 | 0.000 | 0.236 | 0.000 | 12.530 | 0.236 | 1.182 | 0.000 | 0.236 | 0.000 | 0.000 |
| Uruguay | 93 | 93.548 | 2.151 | 1.075 | 0.000 | 68.817 | 2.151 | 67.742 | 2.151 | 0.000 | 0.000 | 0.000 |
| Panamá | 11 | 100.000 | 0.000 | 27.273 | 0.000 | 100.000 | 18.182 | 54.545 | 0.000 | 9.091 | 0.000 | 0.000 |
Fig. 4Dengue risk map in South America in the current biogeographical context of vector-dengue interaction. The map shows the intersection favorability values between the union of the favorability for the two mosquito species with the favorability for dengue (F-Ae. aegypti ∪ F-Ae. albopictus) ∩ F-dengue. The maps were developed using QGIS (www.qgis.org) in the composer tool. The final composition was created using CorelDRAW X8