| Literature DB >> 31488060 |
Eugeni Belda1,2,3, Ferdinand Nanfack-Minkeu1,2,4, Karin Eiglmeier1,2, Guillaume Carissimo5, Inge Holm1,2, Mawlouth Diallo6, Diawo Diallo6, Amélie Vantaux7, Saorin Kim7, Igor V Sharakhov8, Kenneth D Vernick9,10.
Abstract
Following the publication of this article [1], the authors reported that the original shading in columns 3 and 4 of Table 3, which indicated the presence or absence of viruses in each library, had been removed during typesetting.Entities:
Year: 2019 PMID: 31488060 PMCID: PMC6727419 DOI: 10.1186/s12864-019-6067-5
Source DB: PubMed Journal: BMC Genomics ISSN: 1471-2164 Impact factor: 3.969
Similarity of Senegal and Cambodia virus assemblies by BLASTX to 24 reference viruses in GenBank. 10 targets are shared, 9 are Senegal-specific, and 5 are Cambodia-specific
| Reference virus | Viral taxonomy | Senegal libraries | Cambodia libraries |
|---|---|---|---|
| Culex tritaeniorhynchus rhabdovirus RNA, complete genome | Viruses; ssRNA viruses; ssRNA negative-strand viruses; Mononegavirales; Rhabdoviridae; unclassified Rhabdoviridae. | Present | Present |
| Phasi Charoen-like virus | Viruses; ssRNA viruses; ssRNA negative-strand viruses; Bunyavirales; unclassified Bunyavirales. | Present | Present |
| Uncultured virus isolate acc_1.3 | Viruses; environmental samples. | Present | Present |
| Wellfleet Bay virus isolate 10–280-G segment 4 | Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Quaranjavirus; unclassified Quaranjavirus. | Present | Present |
| Wuhan Mosquito Virus 1 strain WT3–15 | Viruses; ssRNA viruses; ssRNA negative-strand viruses; unclassified ssRNA negative-strand viruses. | Present | Present |
| Wuhan Mosquito Virus 9 strain JX1–13 | Viruses; ssRNA viruses; ssRNA negative-strand viruses; unclassified ssRNA negative-strand viruses. | Present | Present |
| Xincheng Mosquito Virus strain XC1–6 | Viruses; ssRNA viruses; ssRNA negative-strand viruses; unclassified ssRNA negative-strand viruses. | Present | Present |
| Xinzhou Mosquito Virus strain XC3–5 | Viruses; ssRNA viruses; ssRNA negative-strand viruses; unclassified ssRNA negative-strand viruses. | Present | Present |
| Beaumont virus strain 6 | Viruses; ssRNA viruses; ssRNA negative-strand viruses; Mononegavirales; Rhabdoviridae; unclassified Rhabdoviridae. | Present | Present |
| Jurona virus | Viruses; ssRNA viruses; ssRNA negative-strand viruses; Mononegavirales; Rhabdoviridae; Vesiculovirus. | Present | Present |
| Omono River virus | Viruses; dsRNA viruses | Present | Absent |
| American dog tick phlebovirus isolate FI3 | Viruses; ssRNA viruses; ssRNA negative-strand viruses; Bunyavirales; Phlebovirus; unclassified Phlebovirus. | Present | Absent |
| Daeseongdong virus 1 strain A12.2708/ROK/2012 | Viruses; unclassified viruses. | Present | Absent |
| DsRNA virus environmental sample clone mill.culi_contig84 | Viruses; dsRNA viruses; environmental samples. | Present | Absent |
| Homalodisca vitripennis reovirus segment S3 | Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Phytoreovirus; unclassified Phytoreovirus | Present | Absent |
| Ixodes scapularis associated virus 2 isolate A1, partial genome | Viruses; unclassified viruses. | Present | Absent |
| Sunn-hemp mosaic virus | Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae; Tobamovirus. | Present | Absent |
| Uncultured virus isolate acc_7.4 | Viruses; environmental samples. | Present | Absent |
| Wuhan Spider Virus strain SYZZ-2 | Viruses; ssRNA viruses; ssRNA negative-strand viruses; unclassified ssRNA negative-strand viruses. | Present | Absent |
| Nienokoue virus isolate B51/CI/2004 | Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae | Absent | Present |
| Oat golden stripe virus RNA1 | Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae; Furovirus | Absent | Present |
| Puerto Almendras virus isolate LO-39 | Viruses; ssRNA viruses; ssRNA negative-strand viruses; Mononegavirales; Rhabdoviridae; unclassified Rhabdoviridae. | Absent | Present |
| Tobacco streak virus isolate pumpkin segment RNA1 | Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae; Ilarvirus | Absent | Present |
| Bivens Arm virus isolate UF 10 | Viruses; ssRNA viruses; ssRNA negative-strand viruses; Mononegavirales; Rhabdoviridae; Tibrovirus | Absent | Present |