| Literature DB >> 31486300 |
Guo-Kang Sun1,2, Li-Juan Tang1,2, Jing-Dong Zhou1,2, Zi-Jun Xu1,2, Lan Yang1,2, Qian Yuan2,3, Ji-Chun Ma2,3, Xing-Hui Liu4, Jiang Lin2,3, Jun Qian2,3,5, Dong-Ming Yao1,2.
Abstract
BACKGROUND: Downstream of tyrosine kinase 6 (DOK6), which is specifically expressed in the nervous system, was previously recognized as an adapter only in neurite outgrowth. Recent studies also demonstrated the potential role of DOK6 in solid tumors such as gastric cancer and breast cancer. However, previous studies of DOK6 have not dealt with its roles in myeloid malignancies. Herein, we verified the promoter methylation status of DOK6 and further explored its clinical implication in de novo acute myeloid leukemia (AML).Entities:
Keywords: zzm321990DOK6zzm321990; AML; biomarker; methylation; prognosis
Mesh:
Substances:
Year: 2019 PMID: 31486300 PMCID: PMC6797566 DOI: 10.1002/cam4.2540
Source DB: PubMed Journal: Cancer Med ISSN: 2045-7634 Impact factor: 4.452
Primers used for qPCR, MSP and BSP
| Primers | Sequence(5′‐3′) | Product size (bp) | |
|---|---|---|---|
| qPCR |
| CAGGGCTACGTGAAAATCCG | 200 |
|
| TTCTTTGTCTCTCGGGGCAG | ||
| MSP |
| ATTAATTATTCGGGTCGGTC | 128 |
|
| AAAAAAACCAATCGTACGC | ||
|
| TAAATTAATTATTTGGGTTGGTT | 128 | |
|
| CACAAAAAAACCAATCATACAC | ||
| BSP |
| TTATGTGTTTTTATATTAAGGGGAGAA | 312 |
|
| CAAACCCTTCCTAATACACACA | ||
Abbreviations: BSP, bisulfite sequencing PCR; DOK6, downstream of tyrosine kinase 6; M, methylation; MSP, real‐time quantitative methylation‐specific PCR; qPCR, real‐time quantitative PCR; U, unmethylation.
Figure 1Downstream of tyrosine kinase 6 (DOK6) methylation primer position and methylation density of the DOK6 promoter in AML. A, The genomic coordinates (GC) of DOK6 promoter region CpG island and primer locations. The panel plots the GC content as a percentage of the total. Each vertical bar in the bottom panel represents the presence of a CpG dinucleotide. Black horizontal bars indicate regions amplified by MSP primer pairs and BSP primer pairs. This figure was created using Methyl Primer Express v1.0 software and CpGplot (http://emboss.bioinformatics.nl/cgi-bin/emboss/cpgplot). AML, acute myeloid leukemia; BSP, bisulfite sequencing PCR; MSP, methylation‐specific PCR; TSS, transcription start site. B, Relative promoter methylation level of DOK6 in AML patients and controls. DOK6 methylation level was examined by MSP DOK6 methylation level was up‐regulated in AML patients compare to controls. MSP: methylation‐specific PCR. C, Methylation density of DOK6 promoter in AML patients and controls. Methylation density was determined by BSP. White cycle: unmethylated CpG dinucleotide; Black cycle: methylated CpG dinucleotide. P1: methylated AML patient; P2: unmethylated AML patient; P3 and P4: controls
Figure 2Downstream of tyrosine kinase 6 (DOK6) expression levels in THP‐1 cell line and acute myeloid leukemia (AML). A, DOK6 relative expression in THP‐1 cell line with or without 5‐aza‐dC treatment; DOK6 expression level was examined by real‐time quantitative PCR (qPCR). B, DOK6 promoter methylation levels in THP‐1 cell line with or without 5‐aza‐dC treatment; DOK6 methylation level was examined by methylation‐specific PCR. C, Relative expression level of DOK6 in AML patients and controls. DOK6 expression level was examined by qPCR
Comparison of clinical characteristics between DOK6 unmethylated and DOK6 methylated group
| Patient's parameters | Methylated (n = 52) | Unmethylated (n = 48) |
|
|---|---|---|---|
| Sex, male/female | 31/21 | 28/20 | >.999 |
| Median age, y (range) | 49.00 (18‐80) | 56.5 (18‐85) | .320 |
| Median WBC, ×109/L (range) | 9.250 (0.3‐528.0) | 19.00 (0.4‐129.1) | .988 |
| Median platelets, ×109/L (range) | 37.50 (5‐264) | 40 (9‐191) | .753 |
| Median hemoglobin, g/L (range) | 72.5 (34‐123) | 82.5 (32‐135) | .417 |
| BM blasts, % (range) | 40.0 (1.0‐97.5) | 43.0 (6.5‐99.0) | .529 |
| FAB | .037 | ||
| M0 | 0 | 2 | |
| M1 | 5 | 0 | |
| M2 | 20 | 18 | |
| M3 | 16 | 8 | |
| M4 | 6 | 13 | |
| M5 | 3 | 5 | |
| M6 | 2 | 2 | |
| Karyotype classification | .162 | ||
| Favorable | 18 (35%) | 12 (25%) | |
| Intermediate | 24(46%) | 24 (50%) | |
| Poor | 10 (19%) | 8 (16%) | |
| No data | 0 (0%) | 4 (8%) | |
| Karyotype | .379 | ||
| 1Normal | 20 (38%) | 18(38%) | |
| 2t(8;21) | 4 (8%) | 4 (8%) | |
| 3t(15;17) | 14 (27%) | 8 (17%) | |
| 4t(9;22) | 1 (2%) | 1 (2%) | |
| +8 | 0 (0%) | 2 (4%) | |
| −7/7q− | 1 (2%) | 0(0%) | |
| 5complex | 4 (8%) | 4 (8%) | |
| 6others | 8 (15%) | 7 (15%) | |
| 7No data | 0 (0%) | 4 (8%) | |
| Gene mutation | |||
|
| 4/40 | 2/31 | .695 |
|
| 0/44 | 3/30 | .075 |
|
| 3/41 | 1/32 | .631 |
|
| 3/41 | 1/32 | .631 |
|
| 2/42 | 0/33 | .504 |
|
| 0/44 | 3/30 | .075 |
|
| 2/42 | 1/32 | >.999 |
|
| 2/42 | 0/33 | .504 |
| CR (−/+) | 23/25 | 26/16 | .208 |
Abbreviations: BM, bone marrow; CR, complete remission; DOK6, downstream of tyrosine kinase 6; FAB, French‐American‐British; WBC, white blood cells.
Figure 3Prognostic value of downstream of tyrosine kinase 6 (DOK6) methylation in acute myeloid leukemia (AML) patients. (A, B, D) For DOK6 methylation in AML patients and non‐APL AML patients as well as AML patients who are less than 60 years old. C, For DOK6 expression in de novo AML patients. DOK6 expression level was examined by real‐time quantitative PCR
Univariate and multivariate analysis of prognostic factors for overall survival in non‐APL patients
| Variables | Overall survival | |||
|---|---|---|---|---|
| Univariate analysis | Multivariate analysis | |||
| HR (95% CI) |
| HR (95% CI) |
| |
| WBC | 1.852 (1.098‐3.123) | .021 | 1.506 (0.883‐2.568) | .133 |
| Age | 2.139 (1.262‐3.625) | .005 | 2.081 (1.213‐3.570) | .008 |
|
| 0.580 (0.339‐0.993) | .047 | 0.577 (0.331‐1.005) | .052 |
| Karyotype risk | 1.834 (1.252‐2.686) | .002 | 1.618 (1.107‐2.365) | .013 |
|
| 0.830 (0.255‐2.701) | .757 | — | — |
|
| 0.660 (0.158‐2.751) | .568 | — | — |
|
| 0.746 (0.180‐3.094) | .686 | — | — |
|
| 0.309 (0.042‐2.246) | .246 | — | — |
|
| 0.421 (0.057‐3.100) | .396 | — | — |
|
| 0.960 (0.227‐4.052) | .956 | — | — |
|
| 1.183 (0.363‐3.856) | .780 | — | — |
Variables including age (≤60 vs >60 years), WBC (≥30 × 109 vs <30 × 109/L), DOK6 methylation (unmethylated vs methylated), karyotype risk (favorable vs intermediate vs poor), and gene mutations (mutant vs wild‐type).
Multivariate analysis includes variables with P < .200 in univariate analysis.
Abbreviations: CI, confidence interval; DOK6, downstream of tyrosine kinase 6; HR, hazard ratio.
Univariate and multivariate analysis of prognostic factors for overall survival in AML patients who are less than or equal 60 years old
| Variables | Overall survival | |||
|---|---|---|---|---|
| Univariate analysis | Multivariate analysis | |||
| HR (95% CI) |
| HR (95% CI) |
| |
| WBC | 2.185 (1.052‐4.540) | .036 | 1.302 (0.593‐2.859) | .511 |
|
| 0.473 (0.232‐0.961) | .038 | 0.477 (0.233‐0.976) | .043 |
| Karyotype risk | 2.840 (1.781‐4.527) | <.001 | 2.840 (1.769‐4.561) | <.001 |
|
| 1.236 (0.292‐5.237) | .774 | — | — |
|
| 1.172 (0.277‐4.968) | .829 | — | — |
|
| 0.710 (0.096‐5.257) | .738 | — | — |
|
| 0.835 (0.113‐6.173) | .860 | — | — |
|
| 0.996 (0.135‐7.381) | .997 | — | — |
|
| 1.101 (0.148‐8.166) | .925 | — | — |
Variables including WBC (≥30 × 109 vs <30 × 109/L), DOK6 methylation (unmethylated vs methylated), karyotype risk (favorable vs intermediate vs poor), and gene mutations (mutant vs wild‐type).
Multivariate analysis includes variables with P < .200 in univariate analysis.
Abbreviations: CI, confidence interval; DOK6, downstream of tyrosine kinase 6; HR, hazard ratio.