Literature DB >> 31485548

Time-dependent behavioral data from zebrafish reveals novel signatures of chemical toxicity using point of departure analysis.

Dennis G Thomas1, Harish Shankaran1, Lisa Truong2, Robert L Tanguay2, Katrina M Waters1.   

Abstract

High-content imaging of larval zebrafish behavior can be used as a screening approach to rapidly evaluate the relative potential for chemicals to cause toxicity. However, most statistical methods applied to these data transform movement values to incidence-based "hits" and calculate lowest effect levels (LELs), which loses individual fish resolution of behavior and defies hazard ranking due to reliance on applied dose levels. We developed a parallelizable workflow to calculate benchmark dose (BMD) values from dynamic, high-content zebrafish behavior data that scales for high-throughput chemical screening. To capture the zebrafish movement response from light to dark stimulus, we summarized time-dependent data using both area under the curve and the immediate change at the transition point into two novel metrics that characterized abnormal behavior as a function of chemical concentration. The BMD workflow was applied to calculate BMD10 values of 1,060 ToxCast chemicals for 24 zebrafish endpoints, including behavior, mortality and morphology. The BMD10 values provided better precision and separation than LELs for clustering chemicals since they were derived from models that best-fit their concentration-response curves. Analysis of BMD10 values revealed behavioral signatures as the most sensitive endpoints. High concordance in chemical activity was observed between ToxCast in vitro data and zebrafish in vivo behavioral data, however ToxPi analysis indicated that rankings based on in vitro data were not a reliable predictor of in vivo rankings for lower potency chemicals. This analysis method will enable the use of high-content zebrafish behavioral screening data for BMD analysis in toxicological hazard assessment.

Entities:  

Keywords:  Benchmark dose; biological modeling; high-content imaging; zebrafish

Year:  2018        PMID: 31485548      PMCID: PMC6726397          DOI: 10.1016/j.comtox.2018.11.001

Source DB:  PubMed          Journal:  Comput Toxicol        ISSN: 2468-1113


  23 in total

Review 1.  Introduction to benchmark dose methods and U.S. EPA's benchmark dose software (BMDS) version 2.1.1.

Authors:  J Allen Davis; Jeffrey S Gift; Q Jay Zhao
Journal:  Toxicol Appl Pharmacol       Date:  2010-10-27       Impact factor: 4.219

2.  The ToxCast program for prioritizing toxicity testing of environmental chemicals.

Authors:  David J Dix; Keith A Houck; Matthew T Martin; Ann M Richard; R Woodrow Setzer; Robert J Kavlock
Journal:  Toxicol Sci       Date:  2006-09-08       Impact factor: 4.849

3.  Evaluation of embryotoxicity using the zebrafish model.

Authors:  Lisa Truong; Stacey L Harper; Robert L Tanguay
Journal:  Methods Mol Biol       Date:  2011

4.  On the use of hierarchical probabilistic models for characterizing and managing uncertainty in risk/safety assessment.

Authors:  Ralph L Kodell; James J Chen
Journal:  Risk Anal       Date:  2007-04       Impact factor: 4.000

Review 5.  Zebrafish as a model vertebrate for investigating chemical toxicity.

Authors:  Adrian J Hill; Hiroki Teraoka; Warren Heideman; Richard E Peterson
Journal:  Toxicol Sci       Date:  2005-02-09       Impact factor: 4.849

Review 6.  A procedure for developing risk-based reference doses.

Authors:  David W Gaylor; Ralph L Kodell
Journal:  Regul Toxicol Pharmacol       Date:  2002-04       Impact factor: 3.271

7.  Endocrine profiling and prioritization of environmental chemicals using ToxCast data.

Authors:  David M Reif; Matthew T Martin; Shirlee W Tan; Keith A Houck; Richard S Judson; Ann M Richard; Thomas B Knudsen; David J Dix; Robert J Kavlock
Journal:  Environ Health Perspect       Date:  2010-09-08       Impact factor: 9.031

8.  A toxicology for the 21st century--mapping the road ahead.

Authors:  Thomas Hartung
Journal:  Toxicol Sci       Date:  2009-04-08       Impact factor: 4.849

Review 9.  The toxicity data landscape for environmental chemicals.

Authors:  Richard Judson; Ann Richard; David J Dix; Keith Houck; Matthew Martin; Robert Kavlock; Vicki Dellarco; Tala Henry; Todd Holderman; Philip Sayre; Shirlee Tan; Thomas Carpenter; Edwin Smith
Journal:  Environ Health Perspect       Date:  2008-12-22       Impact factor: 9.031

10.  BMDExpress: a software tool for the benchmark dose analyses of genomic data.

Authors:  Longlong Yang; Bruce C Allen; Russell S Thomas
Journal:  BMC Genomics       Date:  2007-10-25       Impact factor: 3.969

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  2 in total

1.  The multi-dimensional embryonic zebrafish platform predicts flame retardant bioactivity.

Authors:  Lisa Truong; Skylar Marvel; David M Reif; Dennis G Thomas; Paritosh Pande; Subham Dasgupta; Michael T Simonich; Katrina M Waters; Robyn L Tanguay
Journal:  Reprod Toxicol       Date:  2020-08-19       Impact factor: 3.143

2.  Grouping of chemicals into mode of action classes by automated effect pattern analysis using the zebrafish embryo toxicity test.

Authors:  E Teixidó; T R Kieβling; N Klüver; S Scholz
Journal:  Arch Toxicol       Date:  2022-03-07       Impact factor: 6.168

  2 in total

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