Literature DB >> 31484492

Correction to: small RNA discovery in the interaction between barley and the powdery mildew pathogen.

Matt Hunt1,2, Sagnik Banerjee2,3, Priyanka Surana2,3, Meiling Liu3,4, Greg Fuerst5, Sandra Mathioni6, Blake C Meyers6,7, Dan Nettleton3,4, Roger P Wise8,9,10,11.   

Abstract

Following the publication of the original article [1], the authors noted several typesetting errors which are noted in this Correction article.

Entities:  

Year:  2019        PMID: 31484492      PMCID: PMC6727339          DOI: 10.1186/s12864-019-6012-7

Source DB:  PubMed          Journal:  BMC Genomics        ISSN: 1471-2164            Impact factor:   3.969


Correction to: BMC Genomics https://doi.org/10.1186/s12864-019-5947-z Following the publication of the original article [1], the authors noted several typesetting errors which are noted in this Correction article. In the section “PhasiRNA analysis” there was an error in the first equation in the PDF version of the article. A fraction bar was erroneously introduced between (20 m and n-x), (m and x), and (21 m and n). The incorrect version was: The correct version is: Furthermore, due to the formatting of Table 3 there was an error in the formatting of the alignment bars. The correct Table 3 is provided in this Correction article.
Table 3

Differentially expressed predicted miRNAs and barley mapped reads with homology to miRBase miRNAs

Predicted miRNA or readSequencemiRBase matchNumber of predicted barley copiesDE time points (and log2 fold changes)miRBase blastn overlapMismatches
DE barley mapped readTCGGACCAGGCTTCATGCCCCmiR165NAbln1 16 HAI (-2.55), bln1 20 HAI (-2.39), mla6 20 HAI (-1.77), rar3 20 HAI (-2.14), bln1 24 HAI (-2.47), mla6 24 HAI (-2.02), bln1 48 HAI (-2.41), mla6 48 HAI (-1.78) 1
DE barley mapped readTTCGGACCAGGCTTCCTTCCCmiR166NAmla6 48 HAI (1.92) 2
DE barley mapped readTGGGACCAGGCTTCATTCCCCmiR166NAbln1 20 HAI (-2.24), rar3 20 HAI (-1.71) 1
DE barley mapped readTCGGACCAGGGTTCATTCCCCmiR166NAbln1 48 HAI (-2.31), mla6 48 HAI (-1.80) 1
DE barley mapped readTTCGGACCAGGCTTCAGTCCCmiR166NArar3 48 HAI (-2.10) 2
DE predicted miRNAACACAAACCGGGACTAAAGmiR21209mla6 20 HAI (1.59) 2
DE predicted miRNAGTGTTCTCAGGTCGCCCCCGCmiR3982mla6 32 HAI (2.03) 1
DE predicted miRNAAGAACAGAGAATGGCGATAGACTCmiR3981mla6 0 HAI (1.63), mla6 20 HAI (1.72), mla6 24 HAI (1.66), mla6 48 HAI (1.93) 4
DE barley mapped readTGTGTTCTCAGGTCGCCCCCGmiR398NAmla6 24 HAI (1.71), mla6 32 HAI (2.57) 0
DE predicted miRNATCCTGTGCCTGCCTCTTCCATmiR5281mla6 20 HAI (1.97), mla6 24 HAI (2.27), mla6 32 HAI (2.18) 1
DE barley mapped readTCCTGTGCCTGCCTCTTCCATmiR528NAmla6 24 HAI (2.07), mla6 32 HAI (2.19) 1
DE barley mapped readTGGAAGGGGCATGCAGAGGAmiR528NAmla6 32 HAI (1.86) 0
DE barley mapped readTGGAAGGGGCATGCAGAGGAGmiR528NAmla6 16 HAI (2.20), mla6 20 HAI (2.40), mla6 24 HAI (2.21), mla6 32 HAI (2.09) 0
DE barley mapped readCCTGTGCCTGCCTCTTCCATTmiR528NAmla6 0 HAI (1.99) 0
DE predicted miRNAATTTTGCTTCGTATGTAGACTnone17mla6 0 HAI (1.97)noneNA
DE predicted miRNATATTAGTTGACAGAGGGAGTAnone5mla6 48 HAI (-1.77), mla6- bln1 48 HAI (-2.44), bln1 48 HAI (-2.40)noneNA
DE predicted miRNAAACTAGTACTACTCTAATGTGCCTnone3mla6 0 HAI (-1.07)noneNA
DE predicted miRNAGCTTTCATAGCTCAGTTGGTTAGAGCACCCGnone1bln1 32 HAI (1.64)noneNA
DE predicted miRNAAATTTGAACTGTGAAACTnone1mla6 0 HAI (1.46), mla6 20 HAI (1.76), mla6 24 HAI (1.56)noneNA
Differentially expressed predicted miRNAs and barley mapped reads with homology to miRBase miRNAs The publisher would like to apologize to the authors and readers for any inconvenience caused. The original article has been corrected.
  1 in total

1.  Small RNA discovery in the interaction between barley and the powdery mildew pathogen.

Authors:  Matt Hunt; Sagnik Banerjee; Priyanka Surana; Meiling Liu; Greg Fuerst; Sandra Mathioni; Blake C Meyers; Dan Nettleton; Roger P Wise
Journal:  BMC Genomics       Date:  2019-07-25       Impact factor: 3.969

  1 in total
  1 in total

1.  Identification of novel genetic factors underlying the host-pathogen interaction between barley (Hordeum vulgare L.) and powdery mildew (Blumeria graminis f. sp. hordei).

Authors:  Maria Pogoda; Fang Liu; Dimitar Douchkov; Armin Djamei; Jochen C Reif; Patrick Schweizer; Albert W Schulthess
Journal:  PLoS One       Date:  2020-07-02       Impact factor: 3.240

  1 in total

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