Literature DB >> 3148335

Analysis of steric partition behavior of molecules in membranes using statistical physics. Application to gel chromatography and electrophoresis.

J E Schnitzer1.   

Abstract

The principles of statistical physics are used to formulate general expressions for the steric partition behavior of molecules in both random and ordered membrane structures that may be applied to any shape of the solute and/or the volume-excluding element of the membrane. These expressions fully define partitioning in terms of the volume excluded to point molecules and to finite-sized molecules. The mean effective exclusion volume for a molecule is calculated as a function of a global interaction energy, which varies with position, conformation, and orientation of the molecule. It allows consideration of electrostatic and other nonsteric factors. To test the model, specific partition functions are derived for several simple geometries describing the membrane and solute. Frequently, the derived expressions agree with past analyses; however, a new expression describing partitioning within an random network of fibers is derived. It agrees with past results only in the limit of low exclusion volumes. With greater volume exclusions, past results greatly overestimate the partition function. It is applied to gel electrophoresis and chromatography and survives testing with available experimental data. Unlike past analyses, it predicts nonlinear Ferguson plots for agarose gel electrophoresis. In addition, an analytical expression predicting the minimum radius of a sphere excluded from a random fiber matrix is derived, tested, and found to agree with experimental data.

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Year:  1988        PMID: 3148335      PMCID: PMC1330418          DOI: 10.1016/S0006-3495(88)83043-1

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  14 in total

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Authors:  A TISELIUS; J PORATH; P A ALBERTSSON
Journal:  Science       Date:  1963-07-05       Impact factor: 47.728

2.  Determination of the structure of agarose gels by gel chromatography.

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Journal:  Biochim Biophys Acta       Date:  1967-03-22

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Authors:  D Rodbard; A Chrambach
Journal:  Proc Natl Acad Sci U S A       Date:  1970-04       Impact factor: 11.205

4.  Estimation of molecular radius, free mobility, and valence using polyacylamide gel electrophoresis.

Authors:  D Rodbard; A Chrambach
Journal:  Anal Biochem       Date:  1971-03       Impact factor: 3.365

5.  Solute-excluded volumes near the Novikoff cell surface.

Authors:  T G Polefka; R A Garrick; W R Redwood; N I Swislocki; F P Chinard
Journal:  Am J Physiol       Date:  1984-11

6.  Computer graphics of large macromolecules.

Authors:  E J Milner-White; R R Poet
Journal:  Biochem Soc Trans       Date:  1985-08       Impact factor: 5.407

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Authors:  T C Laurent
Journal:  Biochem J       Date:  1964-10       Impact factor: 3.857

8.  A fiber matrix model of capillary permeability.

Authors:  F E Curry; C C Michel
Journal:  Microvasc Res       Date:  1980-07       Impact factor: 3.514

9.  Study of agarose gels by electron microscopy of freeze-fractured surfaces.

Authors:  S Waki; J D Harvey; A R Bellamy
Journal:  Biopolymers       Date:  1982-09       Impact factor: 2.505

10.  Exclusion of spheres by agarose gels during agarose gel electrophoresis: dependence on the sphere's radius and the gel's concentration.

Authors:  P Serwer; S J Hayes
Journal:  Anal Biochem       Date:  1986-10       Impact factor: 3.365

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  8 in total

1.  Detection of channel proximity by nanoparticle-assisted delaying of toxin binding; a combined patch-clamp and flow cytometric energy transfer study.

Authors:  Bálint Rubovszky; Péter Hajdú; Zoltán Krasznai; Rezsõ Gáspár; Thomas A Waldmann; Sándor Damjanovich; László Bene
Journal:  Eur Biophys J       Date:  2005-03       Impact factor: 1.733

2.  Permeability of acetic acid across gel and liquid-crystalline lipid bilayers conforms to free-surface-area theory.

Authors:  T X Xiang; B D Anderson
Journal:  Biophys J       Date:  1997-01       Impact factor: 4.033

3.  A major endothelial plasmalemmal sialoglycoprotein, gp60, is immunologically related to glycophorin.

Authors:  J E Schnitzer; J B Ulmer; G E Palade
Journal:  Proc Natl Acad Sci U S A       Date:  1990-09       Impact factor: 11.205

4.  A computer simulation of free-volume distributions and related structural properties in a model lipid bilayer.

Authors:  T X Xiang
Journal:  Biophys J       Date:  1993-09       Impact factor: 4.033

5.  Explaining glomerular pores with fiber matrices. A visualization study based on computer modeling.

Authors:  J W Booth; C J Lumsden
Journal:  Biophys J       Date:  1993-06       Impact factor: 4.033

6.  Molecular distributions in interphases: statistical mechanical theory combined with molecular dynamics simulation of a model lipid bilayer.

Authors:  T X Xiang; B D Anderson
Journal:  Biophys J       Date:  1994-03       Impact factor: 4.033

7.  Influence of chain ordering on the selectivity of dipalmitoylphosphatidylcholine bilayer membranes for permeant size and shape.

Authors:  T X Xiang; B D Anderson
Journal:  Biophys J       Date:  1998-12       Impact factor: 4.033

8.  Partition and permeation of dextran in polyacrylamide gel.

Authors:  J C Williams; L A Mark; S Eichholtz
Journal:  Biophys J       Date:  1998-07       Impact factor: 4.033

  8 in total

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