Literature DB >> 31477851

Towards the online computer-aided design of catalytic pockets.

Laura Falivene1, Zhen Cao1, Andrea Petta2, Luigi Serra2, Albert Poater1,3, Romina Oliva4, Vittorio Scarano2, Luigi Cavallo5.   

Abstract

The engineering of catalysts with desirable properties can be accelerated by computer-aided design. To achieve this aim, features of molecular catalysts can be condensed into numerical descriptors that can then be used to correlate reactivity and structure. Based on such descriptors, we have introduced topographic steric maps that provide a three-dimensional image of the catalytic pocket-the region of the catalyst where the substrate binds and reacts-enabling it to be visualized and also reshaped by changing various parameters. These topographic steric maps, especially when used in conjunction with density functional theory calculations, enable catalyst structural modifications to be explored quickly, making the online design of new catalysts accessible to the wide chemical community. In this Perspective, we discuss the application of topographic steric maps either to rationalize the behaviour of known catalysts-from synthetic molecular species to metalloenzymes-or to design improved catalysts.

Year:  2019        PMID: 31477851     DOI: 10.1038/s41557-019-0319-5

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  48 in total

1.  Automated iterative Csp3-C bond formation.

Authors:  Daniel J Blair; Sriyankari Chitti; Melanie Trobe; David M Kostyra; Hannah M S Haley; Richard L Hansen; Steve G Ballmer; Toby J Woods; Wesley Wang; Vikram Mubayi; Michael J Schmidt; Robert W Pipal; Greg F Morehouse; Andrea M E Palazzolo Ray; Danielle L Gray; Adrian L Gill; Martin D Burke
Journal:  Nature       Date:  2022-02-08       Impact factor: 49.962

2.  Effect of Pincer Methylation on the Selectivity and Activity in (PNP)Cobalt-Catalyzed C(sp2)-H Borylation.

Authors:  Boran Lee; Tyler P Pabst; Paul J Chirik
Journal:  Organometallics       Date:  2021-11-10       Impact factor: 3.876

3.  Cp2Ti(κ2-tBuNCNtBu): A Complex with an Unusual κ2 Coordination Mode of a Heterocumulene Featuring a Free Carbene.

Authors:  Evan P Beaumier; Christopher P Gordon; Robin P Harkins; Meghan E McGreal; Xuelan Wen; Christophe Copéret; Jason D Goodpaster; Ian A Tonks
Journal:  J Am Chem Soc       Date:  2020-04-15       Impact factor: 15.419

4.  Structurally Modelling the 2-His-1-Carboxylate Facial Triad with a Bulky N,N,O Phenolate Ligand.

Authors:  Emily C Monkcom; Daniël de Bruin; Annemiek J de Vries; Martin Lutz; Shengfa Ye; Robertus J M Klein Gebbink
Journal:  Chemistry       Date:  2021-02-24       Impact factor: 5.236

5.  Suzuki-Miyaura Cross-Coupling of Esters by Selective O-C(O) Cleavage Mediated by Air- and Moisture-Stable [Pd(NHC)(μ-Cl)Cl]2 Precatalysts: Catalyst Evaluation and Mechanism.

Authors:  Shiyi Yang; Tongliang Zhou; Albert Poater; Luigi Cavallo; Steven P Nolan; Michal Szostak
Journal:  Catal Sci Technol       Date:  2021-03-25       Impact factor: 6.119

6.  Catalyst design in C-H activation: a case study in the use of binding free energies to rationalise intramolecular directing group selectivity in iridium catalysis.

Authors:  William J Kerr; Gary J Knox; Marc Reid; Tell Tuttle
Journal:  Chem Sci       Date:  2021-04-20       Impact factor: 9.825

7.  Statistical analysis of C-H activation by oxo complexes supports diverse thermodynamic control over reactivity.

Authors:  Joseph E Schneider; McKenna K Goetz; John S Anderson
Journal:  Chem Sci       Date:  2021-01-29       Impact factor: 9.825

8.  Quantum-mechanical transition-state model combined with machine learning provides catalyst design features for selective Cr olefin oligomerization.

Authors:  Steven M Maley; Doo-Hyun Kwon; Nick Rollins; Johnathan C Stanley; Orson L Sydora; Steven M Bischof; Daniel H Ess
Journal:  Chem Sci       Date:  2020-08-21       Impact factor: 9.825

9.  The dioxasilepanyl group as a versatile organometallic unit: studies on stability, reactivity, and utility.

Authors:  Hayate Saito; Jun Shimokawa; Hideki Yorimitsu
Journal:  Chem Sci       Date:  2021-06-08       Impact factor: 9.825

10.  The Effect of Added Ligands on the Reactions of [Ni(COD)(dppf)] with Alkyl Halides: Halide Abstraction May Be Reversible.

Authors:  Megan E Greaves; Thomas O Ronson; Feliu Maseras; David J Nelson
Journal:  Organometallics       Date:  2021-06-16       Impact factor: 3.876

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