Literature DB >> 31477409

Hyb-Seq for Flowering Plant Systematics.

Steven Dodsworth1, Lisa Pokorny2, Matthew G Johnson3, Jan T Kim4, Olivier Maurin4, Norman J Wickett5, Felix Forest4, William J Baker4.   

Abstract

High-throughput DNA sequencing (HTS) presents great opportunities for plant systematics, yet genomic complexity needs to be reduced for HTS to be effectively applied. We highlight Hyb-Seq as a promising approach, especially in light of the recent development of probes enriching 353 low-copy nuclear genes from any flowering plant taxon.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Hyb-Seq; angiosperms; genomics; high-throughput sequencing; molecular systematics; phylogenetics; sequence capture; tree of life

Year:  2019        PMID: 31477409     DOI: 10.1016/j.tplants.2019.07.011

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  17 in total

1.  New Insights Into the Relationships Within Subtribe Scorzonerinae (Cichorieae, Asteraceae) Using Hybrid Capture Phylogenomics (Hyb-Seq).

Authors:  Elham Hatami; Katy E Jones; Norbert Kilian
Journal:  Front Plant Sci       Date:  2022-07-01       Impact factor: 6.627

2.  Enabling evolutionary studies at multiple scales in Apocynaceae through Hyb-Seq.

Authors:  Shannon C K Straub; Julien Boutte; Mark Fishbein; Tatyana Livshultz
Journal:  Appl Plant Sci       Date:  2020-11-28       Impact factor: 1.936

3.  A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life.

Authors:  William J Baker; Paul Bailey; Vanessa Barber; Abigail Barker; Sidonie Bellot; David Bishop; Laura R Botigué; Grace Brewer; Tom Carruthers; James J Clarkson; Jeffrey Cook; Robyn S Cowan; Steven Dodsworth; Niroshini Epitawalage; Elaine Françoso; Berta Gallego; Matthew G Johnson; Jan T Kim; Kevin Leempoel; Olivier Maurin; Catherine Mcginnie; Lisa Pokorny; Shyamali Roy; Malcolm Stone; Eduardo Toledo; Norman J Wickett; Alexandre R Zuntini; Wolf L Eiserhardt; Paul J Kersey; Ilia J Leitch; Félix Forest
Journal:  Syst Biol       Date:  2022-02-10       Impact factor: 15.683

4.  Aiming off the target: recycling target capture sequencing reads for investigating repetitive DNA.

Authors:  Lucas Costa; André Marques; Chris Buddenhagen; William Wayt Thomas; Bruno Huettel; Veit Schubert; Steven Dodsworth; Andreas Houben; Gustavo Souza; Andrea Pedrosa-Harand
Journal:  Ann Bot       Date:  2021-11-09       Impact factor: 5.040

Review 5.  Strategies for reducing per-sample costs in target capture sequencing for phylogenomics and population genomics in plants.

Authors:  Haley Hale; Elliot M Gardner; Juan Viruel; Lisa Pokorny; Matthew G Johnson
Journal:  Appl Plant Sci       Date:  2020-04-14       Impact factor: 1.936

6.  Reconstructing the Complex Evolutionary History of the Papuasian Schefflera Radiation Through Herbariomics.

Authors:  Zhi Qiang Shee; David G Frodin; Rodrigo Cámara-Leret; Lisa Pokorny
Journal:  Front Plant Sci       Date:  2020-03-20       Impact factor: 5.753

7.  High-throughput methods for efficiently building massive phylogenies from natural history collections.

Authors:  Ryan A Folk; Heather R Kates; Raphael LaFrance; Douglas E Soltis; Pamela S Soltis; Robert P Guralnick
Journal:  Appl Plant Sci       Date:  2021-02-27       Impact factor: 1.936

8.  A New Pipeline for Removing Paralogs in Target Enrichment Data.

Authors:  Wenbin Zhou; John Soghigian; Qiu-Yun Jenny Xiang
Journal:  Syst Biol       Date:  2022-02-10       Impact factor: 15.683

Review 9.  A Guide to Carrying Out a Phylogenomic Target Sequence Capture Project.

Authors:  Tobias Andermann; Maria Fernanda Torres Jiménez; Pável Matos-Maraví; Romina Batista; José L Blanco-Pastor; A Lovisa S Gustafsson; Logan Kistler; Isabel M Liberal; Bengt Oxelman; Christine D Bacon; Alexandre Antonelli
Journal:  Front Genet       Date:  2020-02-21       Impact factor: 4.599

10.  Exploring Angiosperms353: Developing and applying a universal toolkit for flowering plant phylogenomics.

Authors:  Angela J McDonnell; William J Baker; Steven Dodsworth; Félix Forest; Sean W Graham; Matthew G Johnson; Lisa Pokorny; Jennifer Tate; Susann Wicke; Norman J Wickett
Journal:  Appl Plant Sci       Date:  2021-07-26       Impact factor: 1.936

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