Literature DB >> 31476124

Modulation of Amyloid-β42 Conformation by Small Molecules Through Nonspecific Binding.

Chungwen Liang1, Sergey N Savinov1,2, Jasna Fejzo3, Stephen J Eyles4, Jianhan Chen2,5.   

Abstract

Aggregation of amyloid-β (Aβ) peptides is a crucial step in the progression of Alzheimer's disease (AD). Identifying aggregation inhibitors against AD has been a great challenge. We report an atomistic simulation study of the inhibition mechanism of two small molecules, homotaurine and scyllo-inositol, which are AD drug candidates currently under investigation. We show that both small molecules promote a conformational change of the Aβ42 monomer toward a more collapsed phase through a nonspecific binding mechanism. This finding provides atomistic-level insights into designing potential drug candidates for future AD treatments.

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Year:  2019        PMID: 31476124      PMCID: PMC6783347          DOI: 10.1021/acs.jctc.9b00599

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  71 in total

Review 1.  Alzheimer's disease: clinical trials and drug development.

Authors:  Francesca Mangialasche; Alina Solomon; Bengt Winblad; Patrizia Mecocci; Miia Kivipelto
Journal:  Lancet Neurol       Date:  2010-07       Impact factor: 44.182

2.  Structural characterization of a soluble amyloid beta-peptide oligomer.

Authors:  Liping Yu; Rohinton Edalji; John E Harlan; Thomas F Holzman; Ana Pereda Lopez; Boris Labkovsky; Heinz Hillen; Stefan Barghorn; Ulrich Ebert; Paul L Richardson; Laura Miesbauer; Larry Solomon; Diane Bartley; Karl Walter; Robert W Johnson; Philip J Hajduk; Edward T Olejniczak
Journal:  Biochemistry       Date:  2009-03-10       Impact factor: 3.162

3.  Hydrogen bonding in Alzheimer's amyloid-β fibrils probed by 15N{17O} REAPDOR solid-state NMR spectroscopy.

Authors:  Oleg N Antzutkin; Dinu Iuga; Andrei V Filippov; Robert T Kelly; Johanna Becker-Baldus; Steven P Brown; Ray Dupree
Journal:  Angew Chem Int Ed Engl       Date:  2012-09-13       Impact factor: 15.336

Review 4.  Protein aggregation diseases: pathogenicity and therapeutic perspectives.

Authors:  Adriano Aguzzi; Tracy O'Connor
Journal:  Nat Rev Drug Discov       Date:  2010-03       Impact factor: 84.694

Review 5.  The potential protective effect of tramiprosate (homotaurine) against Alzheimer's disease: a review.

Authors:  Carlo Caltagirone; Luigi Ferrannini; Niccolò Marchionni; Giuseppe Nappi; Giovanni Scapagnini; Marco Trabucchi
Journal:  Aging Clin Exp Res       Date:  2012-09-05       Impact factor: 3.636

6.  Amyloid β-peptides 1-40 and 1-42 form oligomers with mixed β-sheets.

Authors:  Maurizio Baldassarre; Cesare M Baronio; Ludmilla A Morozova-Roche; Andreas Barth
Journal:  Chem Sci       Date:  2017-10-12       Impact factor: 9.825

7.  Developing a molecular dynamics force field for both folded and disordered protein states.

Authors:  Paul Robustelli; Stefano Piana; David E Shaw
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-07       Impact factor: 11.205

Review 8.  How to Get Insight into Amyloid Structure and Formation from Infrared Spectroscopy.

Authors:  Sean D Moran; Martin T Zanni
Journal:  J Phys Chem Lett       Date:  2014-05-16       Impact factor: 6.475

9.  Targeting the γ-/β-secretase interaction reduces β-amyloid generation and ameliorates Alzheimer's disease-related pathogenesis.

Authors:  Jin Cui; Xiaoyin Wang; Xiaohang Li; Xin Wang; Chenlu Zhang; Wei Li; Yangming Zhang; Haifeng Gu; Xin Xie; Fajun Nan; Jian Zhao; Gang Pei
Journal:  Cell Discov       Date:  2015-08-18       Impact factor: 10.849

10.  Proliferation of amyloid-β42 aggregates occurs through a secondary nucleation mechanism.

Authors:  Samuel I A Cohen; Sara Linse; Leila M Luheshi; Erik Hellstrand; Duncan A White; Luke Rajah; Daniel E Otzen; Michele Vendruscolo; Christopher M Dobson; Tuomas P J Knowles
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-23       Impact factor: 11.205

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  12 in total

1.  The Effect of (-)-Epigallocatechin-3-Gallate on the Amyloid-β Secondary Structure.

Authors:  Atanu Acharya; Julia Stockmann; Léon Beyer; Till Rudack; Andreas Nabers; James C Gumbart; Klaus Gerwert; Victor S Batista
Journal:  Biophys J       Date:  2020-06-10       Impact factor: 4.033

2.  Dynamics of Amyloid Formation from Simplified Representation to Atomistic Simulations.

Authors:  Phuong Hoang Nguyen; Pierre Tufféry; Philippe Derreumaux
Journal:  Methods Mol Biol       Date:  2022

3.  APOE ε4/ε4 homozygotes with early Alzheimer's disease show accelerated hippocampal atrophy and cortical thinning that correlates with cognitive decline.

Authors:  Susan Abushakra; Anton P Porsteinsson; Marwan Sabbagh; Luc Bracoud; Joel Schaerer; Aidan Power; John A Hey; David Scott; Joyce Suhy; Martin Tolar
Journal:  Alzheimers Dement (N Y)       Date:  2020-12-04

4.  Cancer-Associated Mutations Perturb the Disordered Ensemble and Interactions of the Intrinsically Disordered p53 Transactivation Domain.

Authors:  Lynn G Schrag; Xiaorong Liu; Indhujah Thevarajan; Om Prakash; Michal Zolkiewski; Jianhan Chen
Journal:  J Mol Biol       Date:  2021-05-11       Impact factor: 6.151

Review 5.  Targeting Intrinsically Disordered Proteins through Dynamic Interactions.

Authors:  Jianlin Chen; Xiaorong Liu; Jianhan Chen
Journal:  Biomolecules       Date:  2020-05-11

6.  EGCG binds intrinsically disordered N-terminal domain of p53 and disrupts p53-MDM2 interaction.

Authors:  Jing Zhao; Alan Blayney; Xiaorong Liu; Lauren Gandy; Weihua Jin; Lufeng Yan; Jeung-Hoi Ha; Ashley J Canning; Michael Connelly; Chao Yang; Xinyue Liu; Yuanyuan Xiao; Michael S Cosgrove; Sozanne R Solmaz; Yingkai Zhang; David Ban; Jianhan Chen; Stewart N Loh; Chunyu Wang
Journal:  Nat Commun       Date:  2021-02-12       Impact factor: 14.919

Review 7.  Oligomerization and Conformational Change Turn Monomeric β-Amyloid and Tau Proteins Toxic: Their Role in Alzheimer's Pathogenesis.

Authors:  Botond Penke; Mária Szűcs; Ferenc Bogár
Journal:  Molecules       Date:  2020-04-03       Impact factor: 4.411

8.  The Impact of Natural Compounds on S-Shaped Aβ42 Fibril: From Molecular Docking to Biophysical Characterization.

Authors:  Stefano Muscat; Lorenzo Pallante; Filip Stojceski; Andrea Danani; Gianvito Grasso; Marco Agostino Deriu
Journal:  Int J Mol Sci       Date:  2020-03-16       Impact factor: 5.923

9.  Modulation of p53 Transactivation Domain Conformations by Ligand Binding and Cancer-Associated Mutations.

Authors:  Xiaorong Liu; Jianhan Chen
Journal:  Pac Symp Biocomput       Date:  2020

Review 10.  Aducanumab, gantenerumab, BAN2401, and ALZ-801-the first wave of amyloid-targeting drugs for Alzheimer's disease with potential for near term approval.

Authors:  Martin Tolar; Susan Abushakra; John A Hey; Anton Porsteinsson; Marwan Sabbagh
Journal:  Alzheimers Res Ther       Date:  2020-08-12       Impact factor: 8.823

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