Literature DB >> 31474649

Identification of 15 New Bypassable Essential Genes of Fission Yeast.

Aoi Takeda1, Shigeaki Saitoh2, Hiroyuki Ohkura3, Kenneth E Sawin3, Gohta Goshima1.   

Abstract

Every organism has a different set of genes essential for its viability. This indicates that an organism can become tolerant to the loss of an essential gene under certain circumstances during evolution, via the manifestation of 'masked' alternative mechanisms. In our quest to systematically uncover masked mechanisms in eukaryotic cells, we developed an extragenic suppressor screening method using haploid spores deleted of an essential gene in the fission yeast Schizosaccharomyces pombe. We screened for the 'bypass' suppressors of lethality of 92 randomly selected genes that are essential for viability in standard laboratory culture conditions. Remarkably, extragenic mutations bypassed the essentiality of as many as 20 genes (22%), 15 of which have not been previously reported. Half of the bypass-suppressible genes were involved in mitochondria function; we also identified multiple genes regulating RNA processing. 18 suppressible genes were conserved in the budding yeast Saccharomyces cerevisiae, but 13 of them were non-essential in that species. These trends suggest that essentiality bypass is not a rare event and that each organism may be endowed with secondary or backup mechanisms that can substitute for primary mechanisms in various biological processes. Furthermore, the robustness of our simple spore-based methodology paves the way for genome-scale screening.Key words: Schizosaccharomyces pombe, extragenic suppressor screening, bypass of essentiality (BOE), cut7 (kinesin-5), hul5 (E3 ubiquitin ligase).

Entities:  

Keywords:  Schizosaccharomyces pombe; bypass of essentiality (BOE); cut7 (kinesin-5); extragenic suppressor screening; hul5 (E3 ubiquitin ligase)

Mesh:

Year:  2019        PMID: 31474649      PMCID: PMC6877344          DOI: 10.1247/csf.19025

Source DB:  PubMed          Journal:  Cell Struct Funct        ISSN: 0386-7196            Impact factor:   2.212


  19 in total

1.  Mts4, a non-ATPase subunit of the 26 S protease in fission yeast is essential for mitosis and interacts directly with the ATPase subunit Mts2.

Authors:  C R Wilkinson; M Wallace; M Seeger; W Dubiel; C Gordon
Journal:  J Biol Chem       Date:  1997-10-10       Impact factor: 5.157

2.  High-efficiency gene targeting in Schizosaccharomyces pombe using a modular, PCR-based approach with long tracts of flanking homology.

Authors:  M D Krawchuk; W P Wahls
Journal:  Yeast       Date:  1999-09-30       Impact factor: 3.239

3.  The critical glucose concentration for respiration-independent proliferation of fission yeast, Schizosaccharomyces pombe.

Authors:  Kojiro Takeda; Caroline Starzynski; Ayaka Mori; Mitsuhiro Yanagida
Journal:  Mitochondrion       Date:  2015-04-17       Impact factor: 4.160

4.  Topoisomerase III is essential for accurate nuclear division in Schizosaccharomyces pombe.

Authors:  A Goodwin; S W Wang; T Toda; C Norbury; I D Hickson
Journal:  Nucleic Acids Res       Date:  1999-10-15       Impact factor: 16.971

5.  Molecular genetic analysis of fission yeast Schizosaccharomyces pombe.

Authors:  S Moreno; A Klar; P Nurse
Journal:  Methods Enzymol       Date:  1991       Impact factor: 1.600

6.  Enhancer of Rudimentary Cooperates with Conserved RNA-Processing Factors to Promote Meiotic mRNA Decay and Facultative Heterochromatin Assembly.

Authors:  Tomoyasu Sugiyama; Gobi Thillainadesan; Venkata R Chalamcharla; Zhaojing Meng; Vanivilasini Balachandran; Jothy Dhakshnamoorthy; Ming Zhou; Shiv I S Grewal
Journal:  Mol Cell       Date:  2016-03-03       Impact factor: 17.970

7.  Alpha subunit of mitochondrial F1-ATPase from the fission yeast. Deduced sequence of the wild type and identification of a mutation that alters apparent negative cooperativity.

Authors:  P Falson; L Maffey; K Conrath; M Boutry
Journal:  J Biol Chem       Date:  1991-01-05       Impact factor: 5.157

8.  The Msd1-Wdr8-Pkl1 complex anchors microtubule minus ends to fission yeast spindle pole bodies.

Authors:  Masashi Yukawa; Chiho Ikebe; Takashi Toda
Journal:  J Cell Biol       Date:  2015-05-18       Impact factor: 10.539

9.  Kinesin-14 and kinesin-5 antagonistically regulate microtubule nucleation by γ-TuRC in yeast and human cells.

Authors:  Zachary T Olmsted; Andrew G Colliver; Timothy D Riehlman; Janet L Paluh
Journal:  Nat Commun       Date:  2014-10-28       Impact factor: 14.919

10.  Hul5 HECT ubiquitin ligase plays a major role in the ubiquitylation and turnover of cytosolic misfolded proteins.

Authors:  Nancy N Fang; Alex H M Ng; Vivien Measday; Thibault Mayor
Journal:  Nat Cell Biol       Date:  2011-10-09       Impact factor: 28.824

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  3 in total

1.  Suppressor mutations that make the essential transcription factor Spn1/Iws1 dispensable in Saccharomyces cerevisiae.

Authors:  Francheska López-Rivera; James Chuang; Dan Spatt; Rajaraman Gopalakrishnan; Fred Winston
Journal:  Genetics       Date:  2022-09-30       Impact factor: 4.402

2.  Mitotic spindle formation in the absence of Polo kinase.

Authors:  Juyoung Kim; Gohta Goshima
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-14       Impact factor: 11.205

Review 3.  How Essential Kinesin-5 Becomes Non-Essential in Fission Yeast: Force Balance and Microtubule Dynamics Matter.

Authors:  Masashi Yukawa; Yasuhiro Teratani; Takashi Toda
Journal:  Cells       Date:  2020-05-07       Impact factor: 6.600

  3 in total

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