Literature DB >> 31474181

New means to an end: mRNA export activity impacts alternative polyadenylation.

Jihae Shin1, Hong Cheng2, Bin Tian1.   

Abstract

Gene expression involves multiple co- and post-transcriptional processes that have been increasingly found intertwined. A recent work by our groups (Chen et al. Mol Cell, 2019) indicates that expression of alternative polyadenylation isoforms in mammalian cells can be controlled by nuclear export activities. This regulation has distinct impacts on genes having different sizes and nucleotide contents, and involves RNA polymerase II distribution toward the 3' end of genes. This work raises a number of intriguing questions concerning how 3' end processing and nuclear export are integrated and how their regulation feeds back to transcription.

Entities:  

Keywords:  3’ end processing; Nuclear export; alternative polyadenylation; transcription

Mesh:

Substances:

Year:  2019        PMID: 31474181      PMCID: PMC6948955          DOI: 10.1080/21541264.2019.1658557

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  37 in total

1.  TREX is a conserved complex coupling transcription with messenger RNA export.

Authors:  Katja Strässer; Seiji Masuda; Paul Mason; Jens Pfannstiel; Marisa Oppizzi; Susana Rodriguez-Navarro; Ana G Rondón; Andres Aguilera; Kevin Struhl; Robin Reed; Ed Hurt
Journal:  Nature       Date:  2002-04-28       Impact factor: 49.962

2.  In vivo evidence that defects in the transcriptional elongation factors RPB2, TFIIS, and SPT5 enhance upstream poly(A) site utilization.

Authors:  Yajun Cui; Clyde L Denis
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

3.  A U2-snRNP-independent role of SF3b in promoting mRNA export.

Authors:  Ke Wang; Changping Yin; Xian Du; Suli Chen; Jianshu Wang; Li Zhang; Lantian Wang; Yong Yu; Binkai Chi; Min Shi; Changshou Wang; Robin Reed; Yu Zhou; Jing Huang; Hong Cheng
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-28       Impact factor: 11.205

4.  Genome-wide analysis of pre-mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length.

Authors:  Georges Martin; Andreas R Gruber; Walter Keller; Mihaela Zavolan
Journal:  Cell Rep       Date:  2012-06-07       Impact factor: 9.423

5.  Structure and function of mRNA export adaptors.

Authors:  Matthew J Walsh; Guillaume M Hautbergue; Stuart A Wilson
Journal:  Biochem Soc Trans       Date:  2010-02       Impact factor: 5.407

6.  Biased alternative polyadenylation in human tissues.

Authors:  Haibo Zhang; Ju Youn Lee; Bin Tian
Journal:  Genome Biol       Date:  2005-11-28       Impact factor: 13.583

7.  Mammalian NET-Seq Reveals Genome-wide Nascent Transcription Coupled to RNA Processing.

Authors:  Takayuki Nojima; Tomás Gomes; Ana Rita Fialho Grosso; Hiroshi Kimura; Michael J Dye; Somdutta Dhir; Maria Carmo-Fonseca; Nicholas J Proudfoot
Journal:  Cell       Date:  2015-04-23       Impact factor: 41.582

8.  Co-transcriptional Loading of RNA Export Factors Shapes the Human Transcriptome.

Authors:  Nicolas Viphakone; Ian Sudbery; Llywelyn Griffith; Catherine G Heath; David Sims; Stuart A Wilson
Journal:  Mol Cell       Date:  2019-05-16       Impact factor: 17.970

9.  Analysis of alternative cleavage and polyadenylation by 3' region extraction and deep sequencing.

Authors:  Mainul Hoque; Zhe Ji; Dinghai Zheng; Wenting Luo; Wencheng Li; Bei You; Ji Yeon Park; Ghassan Yehia; Bin Tian
Journal:  Nat Methods       Date:  2012-12-16       Impact factor: 28.547

10.  A compendium of conserved cleavage and polyadenylation events in mammalian genes.

Authors:  Ruijia Wang; Dinghai Zheng; Ghassan Yehia; Bin Tian
Journal:  Genome Res       Date:  2018-08-24       Impact factor: 9.043

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